Wall clock time and date at job start Thu Mar 4 2021 13:21:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.34784 * 1 3 3 O 1.21280 * 119.99532 * 2 1 4 4 C 1.50694 * 119.99926 * 180.02562 * 2 1 3 5 5 H 1.09000 * 112.85132 * 48.80542 * 4 2 1 6 6 C 1.53781 * 113.61167 * 180.02562 * 4 2 1 7 7 C 1.53779 * 87.08504 * 89.19955 * 6 4 2 8 8 H 1.09006 * 113.61312 * 270.80488 * 7 6 4 9 9 N 1.46491 * 113.61737 * 139.98184 * 7 6 4 10 10 C 1.34779 * 120.00452 * 155.00306 * 9 7 6 11 11 O 1.21289 * 119.99591 * 359.97438 * 10 9 7 12 12 C 1.50697 * 120.00282 * 180.02562 * 10 9 7 13 13 O 1.42903 * 109.47103 * 179.97438 * 12 10 9 14 14 C 1.35899 * 117.00351 * 180.02562 * 13 12 10 15 15 C 1.38711 * 120.05047 * 359.97438 * 14 13 12 16 16 C 1.38165 * 119.94450 * 180.02562 * 15 14 13 17 17 C 1.38244 * 120.05319 * 359.97438 * 16 15 14 18 18 C 1.50700 * 119.94709 * 179.97438 * 17 16 15 19 19 O 1.42896 * 109.47736 * 119.99811 * 18 17 16 20 20 Si 1.86301 * 109.46869 * 359.97438 * 18 17 16 21 21 C 1.38288 * 120.11305 * 0.02562 * 17 16 15 22 22 C 1.38123 * 120.05386 * 359.97438 * 21 17 16 23 23 N 1.48007 * 120.02730 * 180.02562 * 22 21 17 24 24 O 1.21803 * 119.99877 * 359.97438 * 23 22 21 25 25 O 1.21799 * 120.00116 * 179.97438 * 23 22 21 26 26 C 1.53785 * 113.68906 * 277.53490 * 4 2 1 27 27 H 0.97005 * 119.99499 * 179.97438 * 1 2 3 28 28 H 0.97002 * 119.99967 * 0.02562 * 1 2 3 29 29 H 1.08996 * 113.61388 * 334.65023 * 6 4 2 30 30 H 1.09000 * 113.68989 * 203.75743 * 6 4 2 31 31 H 0.97006 * 120.00040 * 334.99869 * 9 7 6 32 32 H 1.08993 * 109.47316 * 60.00068 * 12 10 9 33 33 H 1.08995 * 109.46897 * 299.99667 * 12 10 9 34 34 H 1.08000 * 120.03164 * 0.02562 * 15 14 13 35 35 H 1.08002 * 119.97562 * 179.72226 * 16 15 14 36 36 H 1.09004 * 109.47095 * 240.00763 * 18 17 16 37 37 H 0.96700 * 114.00167 * 300.00630 * 19 18 17 38 38 H 1.48503 * 109.99995 * 58.68612 * 20 18 17 39 39 H 1.48508 * 110.00274 * 180.02562 * 20 18 17 40 40 H 1.08001 * 119.97583 * 180.02562 * 21 17 16 41 41 H 1.09001 * 113.61448 * 156.32960 * 26 4 2 42 42 H 1.08996 * 113.61650 * 25.42675 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3478 0.0000 0.0000 3 8 1.9542 1.0504 0.0000 4 6 2.1013 -1.3051 -0.0006 5 1 1.7400 -2.0021 -0.7567 6 6 3.6296 -1.1340 0.0001 7 6 3.5489 -1.1224 1.5357 8 1 3.4009 -0.1283 1.9577 9 7 4.6342 -1.8607 2.1861 10 6 5.0030 -1.5478 3.4441 11 8 4.4365 -0.6545 4.0376 12 6 6.1199 -2.3069 4.1128 13 8 6.3224 -1.7934 5.4309 14 6 7.3014 -2.3721 6.1749 15 6 8.0512 -3.4131 5.6474 16 6 9.0456 -4.0002 6.4059 17 6 9.2939 -3.5506 7.6894 18 6 10.3787 -4.1932 8.5149 19 8 11.3549 -3.2106 8.8667 20 14 11.1895 -5.5491 7.5275 21 6 8.5478 -2.5130 8.2176 22 6 7.5526 -1.9227 7.4633 23 7 6.7548 -0.8118 8.0290 24 8 6.9755 -0.4181 9.1603 25 8 5.8776 -0.2914 7.3633 26 6 2.2503 -1.9331 1.3952 27 1 -0.4850 -0.8401 -0.0004 28 1 -0.4850 0.8401 -0.0004 29 1 3.9632 -0.1882 -0.4267 30 1 4.1666 -1.9929 -0.4024 31 1 5.0875 -2.5749 1.7113 32 1 7.0358 -2.1911 3.5335 33 1 5.8575 -3.3633 4.1704 34 1 7.8578 -3.7644 4.6446 35 1 9.6267 -4.8138 5.9974 36 1 9.9441 -4.6145 9.4214 37 1 11.7837 -2.7928 8.1074 38 1 11.7582 -4.9935 6.2732 39 1 12.2610 -6.1912 8.3307 40 1 8.7440 -2.1632 9.2204 41 1 2.4089 -3.0113 1.3742 42 1 1.4704 -1.6326 2.0948 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_12220716_4549638.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 13:21:13 Heat of formation + Delta-G solvation = -86.979207 kcal Electronic energy + Delta-G solvation = -30509.380089 eV Core-core repulsion = 25846.920705 eV Total energy + Delta-G solvation = -4662.459384 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 352.124 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -43.29683 -41.90664 -41.55311 -40.50652 -39.45991 -38.30338 -37.62515 -37.45663 -34.83389 -34.46387 -33.46845 -32.25552 -30.08108 -27.82684 -27.01186 -26.72036 -26.36011 -24.14734 -23.00666 -22.68522 -21.80247 -20.54788 -20.33840 -19.78032 -19.20274 -18.64149 -18.52443 -18.22791 -18.07597 -18.01783 -17.57844 -17.21908 -16.99942 -16.36294 -16.20239 -15.93723 -15.82224 -15.56570 -15.51326 -15.13534 -14.76708 -14.34950 -14.04645 -13.91756 -13.68052 -13.49621 -13.29506 -13.22721 -13.01970 -12.71686 -12.38384 -12.36573 -12.28418 -12.21461 -11.84768 -11.80875 -11.66166 -11.04933 -10.95480 -10.83435 -10.74970 -10.69576 -10.14272 -9.79446 -4.91132 -1.31975 -0.23795 0.15359 0.35394 1.22275 1.27749 1.43992 1.55329 1.61794 2.02869 2.05692 2.35023 2.55810 3.11688 3.25331 3.35240 3.39720 3.44684 3.45719 3.63077 3.71976 3.74934 3.77143 3.90616 3.93578 4.04035 4.28701 4.30318 4.40187 4.55867 4.56708 4.64431 4.71796 4.81869 4.84470 4.87869 5.02126 5.07861 5.09894 5.19293 5.48288 5.77067 5.84370 6.40346 6.43996 6.45088 6.47792 7.18606 7.31657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.838 5.838 2 C 0.519 3.481 3 O -0.597 6.597 4 C -0.132 4.132 5 H 0.150 0.850 6 C -0.117 4.117 7 C 0.110 3.890 8 H 0.068 0.932 9 N -0.693 5.693 10 C 0.504 3.496 11 O -0.572 6.572 12 C 0.026 3.974 13 O -0.294 6.294 14 C 0.193 3.807 15 C -0.188 4.188 16 C -0.003 4.003 17 C -0.148 4.148 18 C -0.092 4.092 19 O -0.551 6.551 20 Si 0.792 3.208 21 C -0.004 4.004 22 C -0.106 4.106 23 N 0.034 4.966 24 O -0.201 6.201 25 O -0.179 6.179 26 C -0.121 4.121 27 H 0.420 0.580 28 H 0.404 0.596 29 H 0.062 0.938 30 H 0.138 0.862 31 H 0.427 0.573 32 H 0.144 0.856 33 H 0.152 0.848 34 H 0.209 0.791 35 H 0.190 0.810 36 H 0.127 0.873 37 H 0.389 0.611 38 H -0.261 1.261 39 H -0.310 1.310 40 H 0.150 0.850 41 H 0.135 0.865 42 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.349 -17.188 -10.894 20.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.401 5.401 2 C 0.304 3.696 3 O -0.477 6.477 4 C -0.153 4.153 5 H 0.168 0.832 6 C -0.155 4.155 7 C 0.004 3.996 8 H 0.086 0.914 9 N -0.348 5.348 10 C 0.290 3.710 11 O -0.450 6.450 12 C -0.051 4.051 13 O -0.204 6.204 14 C 0.144 3.856 15 C -0.206 4.206 16 C -0.021 4.021 17 C -0.149 4.149 18 C -0.199 4.199 19 O -0.360 6.360 20 Si 0.694 3.306 21 C -0.023 4.023 22 C -0.191 4.191 23 N 0.544 4.456 24 O -0.409 6.409 25 O -0.391 6.391 26 C -0.160 4.160 27 H 0.251 0.749 28 H 0.235 0.765 29 H 0.081 0.919 30 H 0.156 0.844 31 H 0.266 0.734 32 H 0.161 0.839 33 H 0.169 0.831 34 H 0.225 0.775 35 H 0.207 0.793 36 H 0.145 0.855 37 H 0.238 0.762 38 H -0.186 1.186 39 H -0.238 1.238 40 H 0.167 0.833 41 H 0.153 0.847 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.231 -16.767 -10.429 19.872 hybrid contribution -0.296 2.137 0.544 2.225 sum 1.934 -14.631 -9.885 17.763 Atomic orbital electron populations 1.43779 1.06441 1.13808 1.76058 1.20814 0.83515 0.91221 0.74011 1.90766 1.69473 1.35678 1.51822 1.22237 0.96779 0.94527 1.01784 0.83206 1.23282 0.94318 1.04606 0.93273 1.22540 0.87647 0.95803 0.93565 0.91357 1.45564 1.37167 1.38532 1.13494 1.20699 0.84184 0.83492 0.82633 1.90862 1.56257 1.32802 1.65035 1.23149 0.99976 1.00678 0.81261 1.86480 1.49346 1.57118 1.27498 1.18991 0.87708 0.91323 0.87619 1.21829 0.97880 0.96298 1.04584 1.21730 0.93328 0.96140 0.90861 1.20387 0.99997 0.97821 0.96709 1.25543 0.89700 0.98105 1.06523 1.86632 1.55575 1.56106 1.37673 0.94176 0.82461 0.78119 0.75804 1.20845 0.88811 0.92717 0.99901 1.20886 1.04116 0.98092 0.96005 1.43934 1.00160 1.01354 1.00156 1.94498 1.74069 1.67378 1.04998 1.94689 1.25672 1.59213 1.59553 1.23422 0.96562 1.02269 0.93732 0.74893 0.76495 0.91924 0.84359 0.73359 0.83878 0.83085 0.77454 0.79310 0.85533 0.76157 1.18633 1.23843 0.83269 0.84687 0.91930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 3.92 8.87 -173.53 -1.54 2.38 16 2 C 0.52 1.17 7.36 87.65 0.65 1.81 16 3 O -0.60 -8.33 16.59 -3.03 -0.05 -8.38 16 4 C -0.13 0.86 4.34 -11.01 -0.05 0.82 16 5 H 0.15 -2.08 8.14 -2.39 -0.02 -2.10 16 6 C -0.12 0.65 7.20 31.12 0.22 0.87 16 7 C 0.11 -0.09 3.89 45.50 0.18 0.09 16 8 H 0.07 0.75 7.40 -2.38 -0.02 0.74 16 9 N -0.69 4.38 5.35 -440.13 -2.36 2.02 16 10 C 0.50 0.94 7.91 87.66 0.69 1.63 16 11 O -0.57 -9.91 16.10 15.98 0.26 -9.65 16 12 C 0.03 -0.20 5.22 71.24 0.37 0.17 16 13 O -0.29 -1.42 7.68 -63.39 -0.49 -1.90 16 14 C 0.19 0.09 6.67 22.50 0.15 0.24 16 15 C -0.19 2.16 9.04 22.37 0.20 2.36 16 16 C 0.00 0.04 8.66 22.25 0.19 0.23 16 17 C -0.15 0.89 5.39 -19.85 -0.11 0.79 16 18 C -0.09 0.60 2.82 71.24 0.20 0.80 16 19 O -0.55 0.77 12.77 -148.98 -1.90 -1.14 16 20 Si 0.79 -8.34 29.78 68.60 2.04 -6.30 16 21 C 0.00 -0.01 9.12 22.25 0.20 0.20 16 22 C -0.11 -0.77 6.87 36.47 0.25 -0.52 16 23 N 0.03 0.61 4.45 -46.25 -0.21 0.40 16 24 O -0.20 -3.92 18.45 18.88 0.35 -3.57 16 25 O -0.18 -4.11 17.24 25.61 0.44 -3.66 16 26 C -0.12 0.82 7.46 31.10 0.23 1.05 16 27 H 0.42 -5.01 8.83 -92.70 -0.82 -5.83 16 28 H 0.40 -1.72 8.93 -92.71 -0.83 -2.55 16 29 H 0.06 0.09 7.43 -2.39 -0.02 0.08 16 30 H 0.14 -1.96 8.12 -2.39 -0.02 -1.98 16 31 H 0.43 -7.20 8.73 -92.70 -0.81 -8.00 16 32 H 0.14 -2.34 7.66 -2.39 -0.02 -2.35 16 33 H 0.15 -2.68 7.66 -2.39 -0.02 -2.70 16 34 H 0.21 -4.58 6.30 -2.91 -0.02 -4.60 16 35 H 0.19 -3.82 4.87 -2.91 -0.01 -3.83 16 36 H 0.13 -0.90 7.96 -2.38 -0.02 -0.92 16 37 H 0.39 -2.99 8.70 -74.06 -0.64 -3.63 16 38 H -0.26 2.44 7.11 99.48 0.71 3.15 16 39 H -0.31 0.10 7.11 99.48 0.71 0.81 16 40 H 0.15 0.60 7.61 -2.91 -0.02 0.58 16 41 H 0.14 -1.84 8.14 -2.39 -0.02 -1.86 16 42 H 0.06 -0.17 8.10 -2.39 -0.02 -0.19 16 Total: 0.00 -52.46 368.04 -1.97 -54.44 By element: Atomic # 1 Polarization: -33.29 SS G_CDS: -1.91 Total: -35.20 kcal Atomic # 6 Polarization: 7.17 SS G_CDS: 3.39 Total: 10.56 kcal Atomic # 7 Polarization: 8.91 SS G_CDS: -4.10 Total: 4.80 kcal Atomic # 8 Polarization: -26.91 SS G_CDS: -1.39 Total: -28.30 kcal Atomic # 14 Polarization: -8.34 SS G_CDS: 2.04 Total: -6.30 kcal Total: -52.46 -1.97 -54.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_12220716_4549638.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.542 kcal (2) G-P(sol) polarization free energy of solvation -52.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds