Wall clock time and date at job start Thu Mar 4 2021 13:21:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35966 * 116.99988 * 2 1 4 4 C 1.39453 * 120.11766 * 180.02562 * 3 2 1 5 5 O 1.34769 * 133.24544 * 0.02562 * 4 3 2 6 6 C 1.34936 * 110.84107 * 179.30066 * 5 4 3 7 7 C 1.46991 * 125.13765 * 180.10027 * 6 5 4 8 8 O 1.21656 * 119.99971 * 180.53668 * 7 6 5 9 9 N 1.34774 * 120.00183 * 0.54290 * 7 6 5 10 10 C 1.46505 * 120.00059 * 179.97438 * 9 7 6 11 11 H 1.09002 * 112.84783 * 334.66242 * 10 9 7 12 12 C 1.53776 * 113.61814 * 105.86101 * 10 9 7 13 13 C 1.54045 * 86.98602 * 89.15968 * 12 10 9 14 14 H 1.08999 * 113.61555 * 270.88425 * 13 12 10 15 15 C 1.50699 * 113.61823 * 139.97694 * 13 12 10 16 16 N 1.34784 * 119.99817 * 82.50842 * 15 13 12 17 17 O 1.21276 * 120.00411 * 262.50434 * 15 13 12 18 18 C 1.53780 * 113.61194 * 203.47091 * 10 9 7 19 19 C 1.35805 * 109.71780 * 0.57666 * 6 5 4 20 20 C 1.40617 * 119.13318 * 179.70942 * 4 3 2 21 21 C 1.39780 * 120.11690 * 0.50653 * 20 4 3 22 22 C 1.50696 * 120.09011 * 179.79244 * 21 20 4 23 23 O 1.42903 * 109.47131 * 284.71774 * 22 21 20 24 24 Si 1.86305 * 109.47185 * 164.72315 * 22 21 20 25 25 C 1.36629 * 119.81493 * 359.51673 * 21 20 4 26 26 C 1.38260 * 120.12281 * 0.02562 * 3 2 1 27 27 H 1.09000 * 109.47570 * 299.99403 * 1 2 3 28 28 H 1.09002 * 109.47129 * 59.99638 * 1 2 3 29 29 H 1.08998 * 109.47454 * 179.97438 * 1 2 3 30 30 H 0.97001 * 120.00351 * 359.97438 * 9 7 6 31 31 H 1.09003 * 113.61336 * 203.66799 * 12 10 9 32 32 H 1.09003 * 113.61222 * 334.56415 * 12 10 9 33 33 H 0.96995 * 119.99499 * 359.97438 * 16 15 13 34 34 H 0.97000 * 119.99851 * 180.02562 * 16 15 13 35 35 H 1.08995 * 113.61684 * 25.42604 * 18 10 9 36 36 H 1.09004 * 113.61385 * 156.25285 * 18 10 9 37 37 H 1.08006 * 126.95673 * 179.56044 * 19 6 5 38 38 H 1.08999 * 109.47358 * 44.72134 * 22 21 20 39 39 H 0.96700 * 114.00311 * 300.00591 * 23 22 21 40 40 H 1.48499 * 109.99670 * 58.67633 * 24 22 21 41 41 H 1.48497 * 110.00233 * 179.97438 * 24 22 21 42 42 H 1.07994 * 119.75354 * 180.25683 * 25 21 20 43 43 H 1.07999 * 119.65683 * 0.02562 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0462 1.2115 0.0000 4 6 3.4387 1.2873 -0.0005 5 8 4.4140 0.3573 -0.0016 6 6 5.6316 0.9386 -0.0171 7 6 6.9130 0.2183 -0.0246 8 8 7.9595 0.8387 -0.0289 9 7 6.9285 -1.1293 -0.0269 10 6 8.2056 -1.8472 -0.0350 11 1 9.0170 -1.2624 -0.4683 12 6 8.5613 -2.4870 1.3173 13 6 7.7961 -3.7344 0.8363 14 1 6.7340 -3.7163 1.0806 15 6 8.4622 -5.0332 1.2113 16 7 8.2776 -5.5550 2.4402 17 8 9.1643 -5.6089 0.4073 18 6 8.1062 -3.2747 -0.5981 19 6 5.4944 2.2897 -0.0141 20 6 4.0554 2.5510 -0.0068 21 6 3.2765 3.7116 -0.0016 22 6 3.9381 5.0656 -0.0036 23 8 4.4614 5.3419 1.2972 24 14 2.6861 6.3680 -0.4587 25 6 1.9136 3.6151 -0.0005 26 6 1.2957 2.3726 0.0005 27 1 -0.3634 0.5137 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 6.0941 -1.6240 -0.0232 31 1 9.6296 -2.6554 1.4531 32 1 8.0982 -1.9908 2.1703 33 1 7.7163 -5.0944 3.0833 34 1 8.7066 -6.3908 2.6817 35 1 7.2759 -3.4143 -1.2903 36 1 9.0500 -3.6577 -0.9862 37 1 6.2874 3.0230 -0.0172 38 1 4.7500 5.0722 -0.7308 39 1 3.7931 5.3518 1.9961 40 1 1.5583 6.3476 0.5071 41 1 3.3260 7.7080 -0.4636 42 1 1.3128 4.5125 -0.0008 43 1 0.2174 2.3120 0.0014 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_12220716_6672420.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 13:21:46 Heat of formation + Delta-G solvation = -78.780219 kcal Electronic energy + Delta-G solvation = -29950.333719 eV Core-core repulsion = 25544.111832 eV Total energy + Delta-G solvation = -4406.221887 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 347.129 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.77080 -41.75838 -40.78740 -40.29914 -39.12568 -38.60533 -37.11277 -34.75957 -34.40981 -33.66697 -31.92966 -31.02014 -28.64636 -27.54449 -26.81971 -26.29694 -25.07074 -24.01403 -22.36463 -22.08793 -21.78994 -20.37021 -19.92405 -19.09619 -18.61441 -18.38366 -17.88447 -17.79926 -17.75831 -17.11861 -16.99406 -16.60347 -16.30421 -16.20873 -15.96335 -15.83060 -15.65069 -15.37941 -14.84080 -14.58762 -14.57922 -14.49530 -14.20718 -13.70960 -13.50659 -13.42865 -13.40635 -13.25456 -12.98299 -12.47294 -12.25866 -12.12265 -11.86802 -11.72307 -11.65916 -11.62548 -11.03169 -10.97249 -10.68969 -10.60518 -10.36675 -9.84142 -9.01456 -4.88310 -0.68862 0.09314 0.59669 1.14306 1.30852 1.55240 1.59850 1.81466 1.84834 1.98821 2.13505 2.38839 2.59860 3.14565 3.30148 3.37131 3.39049 3.54667 3.65563 3.65741 3.80903 3.86108 3.87663 3.97398 4.16749 4.22450 4.33435 4.42902 4.44329 4.48232 4.51079 4.66202 4.69870 4.76221 4.77749 4.83160 4.86331 4.87411 4.98020 5.04510 5.21170 5.29333 5.38903 5.57365 5.85771 6.15981 6.27758 6.43163 6.50756 6.78104 7.31076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.332 6.332 3 C 0.138 3.862 4 C 0.023 3.977 5 O -0.179 6.179 6 C -0.032 4.032 7 C 0.607 3.393 8 O -0.542 6.542 9 N -0.684 5.684 10 C 0.116 3.884 11 H 0.099 0.901 12 C -0.125 4.125 13 C -0.132 4.132 14 H 0.142 0.858 15 C 0.522 3.478 16 N -0.839 5.839 17 O -0.593 6.593 18 C -0.119 4.119 19 C -0.111 4.111 20 C -0.096 4.096 21 C -0.100 4.100 22 C -0.089 4.089 23 O -0.548 6.548 24 Si 0.781 3.219 25 C -0.089 4.089 26 C -0.166 4.166 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.115 0.885 30 H 0.419 0.581 31 H 0.096 0.904 32 H 0.092 0.908 33 H 0.417 0.583 34 H 0.405 0.595 35 H 0.092 0.908 36 H 0.098 0.902 37 H 0.171 0.829 38 H 0.115 0.885 39 H 0.386 0.614 40 H -0.262 1.262 41 H -0.306 1.306 42 H 0.165 0.835 43 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.658 0.026 1.799 10.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.246 6.246 3 C 0.092 3.908 4 C -0.025 4.025 5 O -0.081 6.081 6 C -0.082 4.082 7 C 0.393 3.607 8 O -0.421 6.421 9 N -0.335 5.335 10 C 0.011 3.989 11 H 0.117 0.883 12 C -0.164 4.164 13 C -0.153 4.153 14 H 0.160 0.840 15 C 0.308 3.692 16 N -0.401 5.401 17 O -0.474 6.474 18 C -0.157 4.157 19 C -0.132 4.132 20 C -0.097 4.097 21 C -0.100 4.100 22 C -0.197 4.197 23 O -0.356 6.356 24 Si 0.684 3.316 25 C -0.106 4.106 26 C -0.184 4.184 27 H 0.092 0.908 28 H 0.095 0.905 29 H 0.134 0.866 30 H 0.257 0.743 31 H 0.114 0.886 32 H 0.110 0.890 33 H 0.249 0.751 34 H 0.236 0.764 35 H 0.110 0.890 36 H 0.117 0.883 37 H 0.189 0.811 38 H 0.133 0.867 39 H 0.236 0.764 40 H -0.188 1.188 41 H -0.234 1.234 42 H 0.182 0.818 43 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -9.343 0.435 1.108 9.418 hybrid contribution -0.026 -0.609 1.659 1.767 sum -9.369 -0.174 2.766 9.770 Atomic orbital electron populations 1.23482 0.75344 1.06017 1.03141 1.86141 1.24270 1.25786 1.88426 1.17970 0.86108 0.86821 0.99899 1.19180 0.88197 0.87078 1.08037 1.84007 1.12623 1.34951 1.76492 1.21852 0.83945 0.92628 1.09783 1.16628 0.85014 0.82617 0.76441 1.90909 1.31426 1.68215 1.51543 1.45466 1.10353 1.04758 1.72897 1.21910 0.86029 0.92933 0.98012 0.88260 1.23351 1.01496 0.93595 0.97929 1.22950 1.02412 0.91066 0.98874 0.84049 1.20815 0.79922 0.86571 0.81889 1.43825 1.53232 1.28209 1.14884 1.90747 1.41412 1.63501 1.51692 1.23167 1.04589 0.92377 0.95571 1.22858 0.95389 0.94471 1.00478 1.19570 0.92324 0.92809 1.05029 1.19541 0.93460 0.93874 1.03169 1.25368 1.07681 0.98640 0.87975 1.86609 1.38946 1.92763 1.17260 0.93889 0.75459 0.73489 0.88745 1.20878 0.92933 0.98831 0.98002 1.21369 1.01806 0.89612 1.05624 0.90824 0.90541 0.86632 0.74318 0.88580 0.88979 0.75143 0.76421 0.88979 0.88348 0.81110 0.86717 0.76436 1.18777 1.23443 0.81835 0.80357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.11 9.81 113.37 1.11 1.00 16 2 O -0.33 -0.30 10.50 -93.16 -0.98 -1.27 16 3 C 0.14 0.21 6.70 22.57 0.15 0.36 16 4 C 0.02 0.13 7.35 23.14 0.17 0.30 16 5 O -0.18 -1.10 10.28 -13.42 -0.14 -1.24 16 6 C -0.03 -0.21 7.07 24.00 0.17 -0.04 16 7 C 0.61 3.97 7.80 86.54 0.67 4.64 16 8 O -0.54 -7.09 16.44 -4.21 -0.07 -7.16 16 9 N -0.68 -0.04 5.26 -443.71 -2.33 -2.37 16 10 C 0.12 -0.03 4.29 45.51 0.20 0.17 16 11 H 0.10 0.33 7.50 -2.39 -0.02 0.31 16 12 C -0.12 0.37 7.45 31.21 0.23 0.60 16 13 C -0.13 0.49 4.04 -10.92 -0.04 0.45 16 14 H 0.14 -1.29 8.14 -2.39 -0.02 -1.31 16 15 C 0.52 0.91 7.63 87.66 0.67 1.58 16 16 N -0.84 4.33 8.87 -173.53 -1.54 2.79 16 17 O -0.59 -7.18 16.74 -3.02 -0.05 -7.23 16 18 C -0.12 0.14 7.14 31.12 0.22 0.36 16 19 C -0.11 -0.75 10.68 23.79 0.25 -0.50 16 20 C -0.10 -0.47 6.16 -20.24 -0.12 -0.60 16 21 C -0.10 -0.02 5.26 -19.87 -0.10 -0.13 16 22 C -0.09 0.05 2.71 71.23 0.19 0.24 16 23 O -0.55 -1.55 12.88 -148.98 -1.92 -3.47 16 24 Si 0.78 -3.40 30.25 68.60 2.08 -1.33 16 25 C -0.09 0.37 8.62 22.02 0.19 0.56 16 26 C -0.17 0.71 9.03 22.40 0.20 0.91 16 27 H 0.07 -0.80 7.66 -2.39 -0.02 -0.82 16 28 H 0.08 -0.85 7.66 -2.39 -0.02 -0.87 16 29 H 0.12 -1.21 8.14 -2.39 -0.02 -1.23 16 30 H 0.42 -1.68 8.42 -92.71 -0.78 -2.46 16 31 H 0.10 -0.16 8.10 -2.39 -0.02 -0.18 16 32 H 0.09 -0.40 8.14 -2.39 -0.02 -0.42 16 33 H 0.42 -4.75 8.83 -92.71 -0.82 -5.56 16 34 H 0.40 -2.20 8.93 -92.71 -0.83 -3.03 16 35 H 0.09 -0.28 8.14 -2.39 -0.02 -0.30 16 36 H 0.10 0.26 7.44 -2.39 -0.02 0.25 16 37 H 0.17 1.09 8.06 -2.91 -0.02 1.07 16 38 H 0.11 -0.04 7.96 -2.39 -0.02 -0.06 16 39 H 0.39 -1.41 8.70 -74.06 -0.64 -2.06 16 40 H -0.26 0.95 6.69 99.48 0.67 1.61 16 41 H -0.31 -1.32 7.11 99.48 0.71 -0.61 16 42 H 0.16 -1.51 4.81 -2.91 -0.01 -1.52 16 43 H 0.18 -1.98 6.26 -2.91 -0.02 -2.00 16 Total: 0.00 -27.84 369.65 -2.73 -30.57 By element: Atomic # 1 Polarization: -17.26 SS G_CDS: -1.94 Total: -19.20 kcal Atomic # 6 Polarization: 5.74 SS G_CDS: 4.16 Total: 9.91 kcal Atomic # 7 Polarization: 4.29 SS G_CDS: -3.87 Total: 0.42 kcal Atomic # 8 Polarization: -17.21 SS G_CDS: -3.16 Total: -20.37 kcal Atomic # 14 Polarization: -3.40 SS G_CDS: 2.08 Total: -1.33 kcal Total: -27.84 -2.73 -30.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_12220716_6672420.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.208 kcal (2) G-P(sol) polarization free energy of solvation -27.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds