Wall clock time and date at job start Thu Mar 4 2021 13:26:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86301 * 1 3 3 C 1.86298 * 109.47546 * 2 1 4 4 C 1.86302 * 109.46852 * 240.00038 * 2 1 3 5 5 C 1.86794 * 109.47328 * 120.00314 * 2 1 3 6 6 C 1.38237 * 120.00012 * 89.99604 * 5 2 1 7 7 C 1.38239 * 119.99913 * 180.02562 * 6 5 2 8 8 C 1.38233 * 120.00153 * 0.02562 * 7 6 5 9 9 C 1.50699 * 120.00260 * 179.97438 * 8 7 6 10 10 C 1.53001 * 109.47146 * 89.99775 * 9 8 7 11 11 N 1.46493 * 109.47318 * 180.02562 * 10 9 8 12 12 C 1.34783 * 120.00427 * 179.97438 * 11 10 9 13 13 O 1.21591 * 119.99468 * 359.97438 * 12 11 10 14 14 C 1.47576 * 120.00318 * 180.02562 * 12 11 10 15 15 C 1.36495 * 120.00824 * 180.02562 * 14 12 11 16 16 N 1.35940 * 120.50290 * 179.97438 * 15 14 12 17 17 C 1.36999 * 132.41397 * 179.97438 * 16 15 14 18 18 C 1.50701 * 126.42589 * 0.02562 * 17 16 15 19 19 O 1.42896 * 109.47417 * 330.00365 * 18 17 16 20 20 Si 1.86301 * 109.47149 * 210.00349 * 18 17 16 21 21 H 1.48506 * 109.47302 * 59.99966 * 20 18 17 22 22 H 1.48503 * 109.47334 * 300.00099 * 20 18 17 23 23 H 1.48500 * 109.47376 * 180.02562 * 20 18 17 24 24 C 1.35004 * 107.14687 * 180.28179 * 17 16 15 25 25 N 1.33587 * 108.65456 * 359.57066 * 24 17 16 26 26 C 1.32419 * 109.22142 * 0.43301 * 25 24 17 27 27 C 1.41251 * 132.12097 * 179.70545 * 26 25 24 28 28 Br 1.89102 * 120.24963 * 0.05937 * 27 26 25 29 29 C 1.35702 * 119.49226 * 180.02562 * 27 26 25 30 30 C 1.38239 * 120.00040 * 0.24530 * 8 7 6 31 31 C 1.38232 * 120.00234 * 270.01930 * 5 2 1 32 32 H 1.09003 * 109.46593 * 299.99938 * 1 2 3 33 33 H 1.09002 * 109.46956 * 59.99845 * 1 2 3 34 34 H 1.08997 * 109.47267 * 180.02562 * 1 2 3 35 35 H 1.08994 * 109.47468 * 180.02562 * 3 2 1 36 36 H 1.09005 * 109.47017 * 300.00568 * 3 2 1 37 37 H 1.09003 * 109.46567 * 59.99865 * 3 2 1 38 38 H 1.09003 * 109.47602 * 300.00385 * 4 2 1 39 39 H 1.09002 * 109.47245 * 60.00294 * 4 2 1 40 40 H 1.09003 * 109.47193 * 180.02562 * 4 2 1 41 41 H 1.07994 * 120.00285 * 0.02562 * 6 5 2 42 42 H 1.08000 * 120.00080 * 179.97438 * 7 6 5 43 43 H 1.08997 * 109.47080 * 330.00260 * 9 8 7 44 44 H 1.08996 * 109.47179 * 209.99328 * 9 8 7 45 45 H 1.09001 * 109.47176 * 59.99680 * 10 9 8 46 46 H 1.09008 * 109.47022 * 300.00180 * 10 9 8 47 47 H 0.96997 * 120.00024 * 0.02562 * 11 10 9 48 48 H 1.07994 * 119.74676 * 359.97438 * 15 14 12 49 49 H 1.09002 * 109.46793 * 90.00818 * 18 17 16 50 50 H 0.96708 * 114.00095 * 299.99924 * 19 18 17 51 51 H 1.07995 * 125.67809 * 179.69754 * 24 17 16 52 52 H 1.07996 * 120.23292 * 179.97438 * 29 27 26 53 53 H 1.07997 * 120.00386 * 179.72597 * 30 8 7 54 54 H 1.08003 * 120.00023 * 0.02562 * 31 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4841 1.7564 0.0000 4 6 2.4839 -0.8782 -1.5212 5 6 2.4857 -0.8806 1.5251 6 6 2.7161 -2.2432 1.4908 7 6 3.1764 -2.8950 2.6196 8 6 3.4059 -2.1843 3.7829 9 6 3.9072 -2.8949 5.0136 10 6 5.4372 -2.8951 5.0149 11 7 5.9245 -3.5864 6.2110 12 6 7.2494 -3.7102 6.4250 13 8 8.0402 -3.2485 5.6251 14 6 7.7404 -4.4072 7.6297 15 6 9.0821 -4.5322 7.8469 16 7 9.5454 -5.1717 8.9534 17 6 10.8112 -5.4340 9.4070 18 6 12.1018 -5.0443 8.7336 19 8 11.9074 -5.0039 7.3185 20 14 13.4190 -6.2963 9.1439 21 1 12.9952 -7.6362 8.6640 22 1 13.6211 -6.3384 10.6145 23 1 14.6910 -5.9120 8.4808 24 6 10.6855 -6.1121 10.5677 25 7 9.3855 -6.2610 10.8369 26 6 8.6733 -5.7020 9.8705 27 6 7.2806 -5.5847 9.6667 28 35 6.0692 -6.3111 10.9240 29 6 6.8185 -4.9462 8.5620 30 6 3.1702 -0.8227 3.8188 31 6 2.7158 -0.1699 2.6882 32 1 -0.3632 0.5139 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 -0.3633 -1.0276 0.0005 35 1 3.5741 1.7564 -0.0005 36 1 2.1207 2.2703 -0.8900 37 1 2.1208 2.2702 0.8900 38 1 2.1206 -1.9059 -1.5213 39 1 2.1206 -0.3644 -2.4112 40 1 3.5740 -0.8787 -1.5210 41 1 2.5364 -2.7986 0.5822 42 1 3.3560 -3.9597 2.5930 43 1 3.5438 -3.9226 5.0132 44 1 3.5432 -2.3812 5.9034 45 1 5.8006 -1.8674 5.0152 46 1 5.8012 -3.4088 4.1250 47 1 5.2937 -3.9557 6.8485 48 1 9.7810 -4.1199 7.1342 49 1 12.4129 -4.0609 9.0860 50 1 11.6290 -5.8470 6.9354 51 1 11.5002 -6.4723 11.1781 52 1 5.7560 -4.8499 8.3940 53 1 3.3453 -0.2681 4.7289 54 1 2.5351 0.8946 2.7152 RHF calculation, no. of doubly occupied orbitals= 74 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_12221182_12335884.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 13:26:54 Heat of formation + Delta-G solvation = 9.507304 kcal Electronic energy + Delta-G solvation = -35071.615585 eV Core-core repulsion = 30372.290554 eV Total energy + Delta-G solvation = -4699.325031 eV No. of doubly occupied orbitals = 74 Molecular weight (most abundant/longest-lived isotopes) = 475.084 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -44.29655 -41.22398 -40.03876 -38.54290 -38.02323 -36.68509 -35.32459 -33.79924 -32.52859 -31.83541 -31.77090 -30.29574 -29.65140 -29.05420 -28.29597 -28.27320 -26.90324 -25.88829 -24.12175 -24.06265 -23.38493 -22.59715 -22.06337 -21.56207 -19.54912 -18.80685 -18.28126 -17.82032 -17.57939 -17.40069 -16.86452 -16.80918 -16.36002 -16.04696 -15.93939 -15.82464 -15.77463 -15.48859 -15.09857 -14.77422 -14.68130 -14.46493 -14.22664 -14.17694 -14.02208 -13.97762 -13.72474 -13.69430 -13.44150 -13.37645 -13.17931 -13.12209 -13.06324 -12.97308 -12.77673 -12.70842 -12.61571 -12.47029 -12.11757 -12.07142 -11.75393 -11.59365 -11.41409 -11.36605 -11.29194 -10.88923 -10.88076 -10.75785 -10.69973 -10.34960 -10.04517 -9.71460 -9.48413 -9.10933 -0.92462 -0.40128 0.17194 0.36871 0.60835 0.87595 1.09724 1.34498 1.50597 1.56696 1.75022 1.87597 1.90688 1.98129 2.02927 2.12857 2.20856 2.68661 2.78250 2.98529 3.05792 3.16758 3.34919 3.45425 3.47443 3.80871 3.92903 3.96794 3.98690 4.14281 4.24011 4.25037 4.26528 4.37535 4.43792 4.49511 4.57667 4.63382 4.67908 4.83435 4.84028 4.86547 4.88131 4.88991 4.90198 4.92783 4.96649 4.97420 5.16650 5.22502 5.23993 5.27213 5.53281 5.54399 5.59774 5.63584 5.67006 5.73124 5.74548 6.23247 6.28606 6.36222 6.46447 6.94522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.461 4.461 2 Si 1.120 2.880 3 C -0.462 4.462 4 C -0.462 4.462 5 C -0.385 4.385 6 C -0.103 4.103 7 C -0.139 4.139 8 C -0.085 4.085 9 C -0.084 4.084 10 C 0.130 3.870 11 N -0.706 5.706 12 C 0.577 3.423 13 O -0.566 6.566 14 C -0.169 4.169 15 C 0.161 3.839 16 N -0.357 5.357 17 C -0.083 4.083 18 C -0.052 4.052 19 O -0.551 6.551 20 Si 1.012 2.988 21 H -0.261 1.261 22 H -0.237 1.237 23 H -0.260 1.260 24 C 0.030 3.970 25 N -0.494 5.494 26 C 0.225 3.775 27 C -0.081 4.081 28 Br 0.006 6.994 29 C -0.023 4.023 30 C -0.139 4.139 31 C -0.103 4.103 32 H 0.067 0.933 33 H 0.073 0.927 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.073 0.927 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.073 0.927 40 H 0.066 0.934 41 H 0.132 0.868 42 H 0.129 0.871 43 H 0.096 0.904 44 H 0.095 0.905 45 H 0.062 0.938 46 H 0.063 0.937 47 H 0.417 0.583 48 H 0.195 0.805 49 H 0.138 0.862 50 H 0.389 0.611 51 H 0.211 0.789 52 H 0.187 0.813 53 H 0.129 0.871 54 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.639 0.307 -1.853 3.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.568 4.568 2 Si 1.307 2.693 3 C -0.569 4.569 4 C -0.569 4.569 5 C -0.425 4.425 6 C -0.121 4.121 7 C -0.157 4.157 8 C -0.085 4.085 9 C -0.122 4.122 10 C 0.007 3.993 11 N -0.358 5.358 12 C 0.364 3.636 13 O -0.446 6.446 14 C -0.176 4.176 15 C 0.035 3.965 16 N -0.030 5.030 17 C -0.194 4.194 18 C -0.161 4.161 19 O -0.358 6.358 20 Si 0.831 3.169 21 H -0.185 1.185 22 H -0.160 1.160 23 H -0.184 1.184 24 C -0.120 4.120 25 N -0.213 5.213 26 C -0.020 4.020 27 C -0.163 4.163 28 Br 0.091 6.909 29 C -0.048 4.048 30 C -0.157 4.157 31 C -0.121 4.121 32 H 0.086 0.914 33 H 0.092 0.908 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.092 0.908 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.092 0.908 40 H 0.086 0.914 41 H 0.150 0.850 42 H 0.147 0.853 43 H 0.114 0.886 44 H 0.114 0.886 45 H 0.080 0.920 46 H 0.081 0.919 47 H 0.256 0.744 48 H 0.212 0.788 49 H 0.156 0.844 50 H 0.239 0.761 51 H 0.228 0.772 52 H 0.204 0.796 53 H 0.147 0.853 54 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -1.960 -0.060 -0.894 2.155 hybrid contribution -0.138 0.143 -0.590 0.623 sum -2.098 0.083 -1.484 2.571 Atomic orbital electron populations 1.26271 1.21573 1.04419 1.04492 0.77238 0.65295 0.64660 0.62081 1.26284 1.06306 1.19556 1.04773 1.26282 1.06307 1.08474 1.15834 1.27818 1.03917 0.99730 1.11059 1.21362 0.97230 0.95105 0.98359 1.21399 1.00532 1.00479 0.93300 1.19823 0.99327 0.94073 0.95321 1.20758 0.92600 1.02396 0.96418 1.21335 0.94107 0.97093 0.86785 1.45701 1.05955 1.58001 1.26145 1.17560 0.83083 0.78853 0.84137 1.90858 1.56224 1.50100 1.47428 1.19232 0.92155 1.07504 0.98732 1.22278 0.96699 0.90181 0.87359 1.42712 1.07743 1.36187 1.16358 1.22465 0.85509 1.10546 1.00913 1.25074 0.95871 1.12595 0.82606 1.86501 1.90949 1.39558 1.18754 0.84842 0.75363 0.75326 0.81391 1.18528 1.16007 1.18440 1.22932 0.94459 0.99262 0.95317 1.70818 1.04053 1.22582 1.23847 1.20733 0.91827 1.00640 0.88824 1.20561 0.89168 1.07369 0.99207 1.96841 1.54368 1.83590 1.56116 1.21371 1.01998 0.92006 0.89474 1.21400 1.00573 0.94408 0.99366 1.21360 0.97267 1.00451 0.92996 0.91415 0.90791 0.91399 0.91455 0.90771 0.90965 0.90948 0.90770 0.91450 0.85003 0.85283 0.88552 0.88615 0.91968 0.91870 0.74427 0.78781 0.84425 0.76135 0.77234 0.79590 0.85338 0.85036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 1.53 8.65 113.37 0.98 2.51 16 2 Si 1.12 -5.82 12.32 68.60 0.85 -4.98 16 3 C -0.46 1.65 8.53 113.37 0.97 2.62 16 4 C -0.46 1.68 8.53 113.37 0.97 2.64 16 5 C -0.39 0.31 4.59 22.27 0.10 0.41 16 6 C -0.10 0.01 9.29 22.27 0.21 0.22 16 7 C -0.14 0.03 9.70 22.27 0.22 0.25 16 8 C -0.08 0.09 5.13 -19.87 -0.10 -0.01 16 9 C -0.08 0.53 5.46 29.85 0.16 0.69 16 10 C 0.13 -0.36 5.66 86.38 0.49 0.13 16 11 N -0.71 3.16 5.51 -466.22 -2.57 0.60 16 12 C 0.58 0.97 7.76 86.71 0.67 1.64 16 13 O -0.57 -5.56 16.27 -4.00 -0.07 -5.62 16 14 C -0.17 0.02 5.84 -20.35 -0.12 -0.10 16 15 C 0.16 0.30 9.91 83.65 0.83 1.13 16 16 N -0.36 -1.28 2.93 -337.71 -0.99 -2.27 16 17 C -0.08 -0.11 6.25 41.01 0.26 0.14 16 18 C -0.05 0.17 3.06 71.24 0.22 0.39 16 19 O -0.55 1.07 10.90 -148.98 -1.62 -0.56 16 20 Si 1.01 -4.71 26.59 68.60 1.82 -2.89 16 21 H -0.26 0.64 7.11 99.48 0.71 1.34 16 22 H -0.24 1.32 6.84 99.48 0.68 2.00 16 23 H -0.26 0.49 7.11 99.48 0.71 1.19 16 24 C 0.03 0.09 10.44 83.68 0.87 0.96 16 25 N -0.49 -4.20 11.30 -194.10 -2.19 -6.39 16 26 C 0.23 1.44 7.59 134.18 1.02 2.46 16 27 C -0.08 -0.20 6.24 22.42 0.14 -0.06 16 28 Br 0.01 0.01 33.72 -20.37 -0.69 -0.67 16 29 C -0.02 0.06 9.26 22.55 0.21 0.27 16 30 C -0.14 0.02 9.70 22.27 0.22 0.23 16 31 C -0.10 0.00 9.29 22.27 0.21 0.21 16 32 H 0.07 -0.19 7.96 -2.39 -0.02 -0.20 16 33 H 0.07 -0.28 7.96 -2.39 -0.02 -0.30 16 34 H 0.07 -0.19 7.96 -2.39 -0.02 -0.21 16 35 H 0.07 -0.17 7.96 -2.39 -0.02 -0.19 16 36 H 0.07 -0.29 7.96 -2.38 -0.02 -0.31 16 37 H 0.07 -0.29 7.69 -2.39 -0.02 -0.31 16 38 H 0.07 -0.30 7.69 -2.39 -0.02 -0.32 16 39 H 0.07 -0.29 7.96 -2.39 -0.02 -0.31 16 40 H 0.07 -0.18 7.96 -2.39 -0.02 -0.20 16 41 H 0.13 -0.47 7.43 -2.91 -0.02 -0.49 16 42 H 0.13 -0.42 8.06 -2.91 -0.02 -0.45 16 43 H 0.10 -0.86 8.09 -2.39 -0.02 -0.88 16 44 H 0.10 -0.84 8.08 -2.39 -0.02 -0.86 16 45 H 0.06 0.02 8.14 -2.39 -0.02 0.01 16 46 H 0.06 0.01 8.14 -2.38 -0.02 -0.01 16 47 H 0.42 -4.58 6.51 -92.71 -0.60 -5.18 16 48 H 0.20 0.37 6.19 -2.91 -0.02 0.36 16 49 H 0.14 -0.76 7.96 -2.39 -0.02 -0.78 16 50 H 0.39 -2.74 8.70 -74.05 -0.64 -3.38 16 51 H 0.21 -0.60 6.71 -2.91 -0.02 -0.62 16 52 H 0.19 -1.95 6.44 -2.91 -0.02 -1.97 16 53 H 0.13 -0.39 8.06 -2.91 -0.02 -0.42 16 54 H 0.13 -0.45 7.43 -2.91 -0.02 -0.47 16 Total: 0.00 -22.49 468.54 3.49 -19.00 By element: Atomic # 1 Polarization: -13.39 SS G_CDS: 0.43 Total: -12.95 kcal Atomic # 6 Polarization: 8.23 SS G_CDS: 8.51 Total: 16.74 kcal Atomic # 7 Polarization: -2.32 SS G_CDS: -5.75 Total: -8.07 kcal Atomic # 8 Polarization: -4.49 SS G_CDS: -1.69 Total: -6.18 kcal Atomic # 14 Polarization: -10.54 SS G_CDS: 2.67 Total: -7.87 kcal Atomic # 35 Polarization: 0.01 SS G_CDS: -0.69 Total: -0.67 kcal Total: -22.49 3.49 -19.00 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_12221182_12335884.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.511 kcal (2) G-P(sol) polarization free energy of solvation -22.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.003 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds