Wall clock time and date at job start Thu Mar 4 2021 13:27:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.28470 * 124.88555 * 2 1 4 4 C 1.31804 * 110.07491 * 180.02562 * 3 2 1 5 5 C 1.47710 * 126.51667 * 179.97438 * 4 3 2 6 6 O 1.21567 * 119.99967 * 180.02562 * 5 4 3 7 7 N 1.34774 * 120.00094 * 0.02562 * 5 4 3 8 8 C 1.46505 * 119.99922 * 179.97438 * 7 5 4 9 9 C 1.53000 * 109.46751 * 179.97438 * 8 7 5 10 10 C 1.50709 * 109.46636 * 180.02562 * 9 8 7 11 11 C 1.38235 * 119.99861 * 269.72415 * 10 9 8 12 12 C 1.38238 * 119.99685 * 179.76519 * 11 10 9 13 13 C 1.38229 * 120.00157 * 0.51278 * 12 11 10 14 14 Si 1.86796 * 120.00240 * 179.72084 * 13 12 11 15 15 C 1.86303 * 109.47148 * 270.02448 * 14 13 12 16 16 C 1.86302 * 109.46875 * 30.02251 * 14 13 12 17 17 C 1.86296 * 109.47091 * 150.02249 * 14 13 12 18 18 C 1.38236 * 119.99747 * 359.74412 * 13 12 11 19 19 C 1.38231 * 119.99728 * 90.00315 * 10 9 8 20 20 C 1.41501 * 106.96289 * 359.76989 * 4 3 2 21 21 C 1.35031 * 124.88376 * 180.02562 * 2 1 3 22 22 C 1.50697 * 126.38808 * 359.93362 * 21 2 1 23 23 O 1.42906 * 109.46831 * 30.00837 * 22 21 2 24 24 Si 1.86300 * 109.47007 * 150.00226 * 22 21 2 25 25 H 1.48503 * 109.46942 * 60.00611 * 24 22 21 26 26 H 1.48503 * 109.47276 * 180.02562 * 24 22 21 27 27 H 1.48494 * 109.47372 * 300.00074 * 24 22 21 28 28 H 1.09001 * 109.47150 * 269.95759 * 1 2 3 29 29 H 1.09005 * 109.47367 * 29.95675 * 1 2 3 30 30 H 1.08999 * 109.47199 * 149.95869 * 1 2 3 31 31 H 0.97005 * 120.00000 * 0.02562 * 7 5 4 32 32 H 1.08999 * 109.47067 * 300.00398 * 8 7 5 33 33 H 1.09000 * 109.46741 * 60.00415 * 8 7 5 34 34 H 1.08999 * 109.47685 * 300.00050 * 9 8 7 35 35 H 1.09000 * 109.47134 * 60.00686 * 9 8 7 36 36 H 1.07999 * 120.00217 * 0.02562 * 11 10 9 37 37 H 1.07999 * 119.99521 * 180.23516 * 12 11 10 38 38 H 1.08994 * 109.47273 * 59.99913 * 15 14 13 39 39 H 1.09005 * 109.46835 * 180.02562 * 15 14 13 40 40 H 1.08996 * 109.46747 * 299.99659 * 15 14 13 41 41 H 1.08998 * 109.46966 * 60.00156 * 16 14 13 42 42 H 1.09004 * 109.46795 * 180.02562 * 16 14 13 43 43 H 1.09003 * 109.47052 * 299.99706 * 16 14 13 44 44 H 1.09001 * 109.47635 * 60.00402 * 17 14 13 45 45 H 1.09004 * 109.47026 * 179.97438 * 17 14 13 46 46 H 1.08998 * 109.47236 * 299.99663 * 17 14 13 47 47 H 1.07999 * 120.00222 * 179.97438 * 18 13 12 48 48 H 1.07995 * 120.00729 * 359.97438 * 19 10 9 49 49 H 1.08002 * 127.24849 * 180.24674 * 20 4 3 50 50 H 1.09000 * 109.47374 * 270.00410 * 22 21 2 51 51 H 0.96704 * 113.99354 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1998 1.0538 0.0000 4 6 3.4740 0.7169 -0.0006 5 6 4.6272 1.6399 -0.0013 6 8 5.7596 1.1978 -0.0022 7 7 4.4240 2.9722 -0.0009 8 6 5.5679 3.8877 -0.0010 9 6 5.0646 5.3325 -0.0012 10 6 6.2413 6.2742 -0.0020 11 6 6.7779 6.7109 1.1948 12 6 7.8602 7.5708 1.1941 13 6 8.3993 8.0024 -0.0033 14 14 9.8569 9.1705 -0.0043 15 6 9.2431 10.9295 -0.0044 16 6 10.8914 8.8738 1.5164 17 6 10.8899 8.8732 -1.5259 18 6 7.8593 7.5699 -1.2001 19 6 6.7803 6.7058 -1.1995 20 6 3.5272 -0.6971 0.0045 21 6 2.2373 -1.1077 -0.0005 22 6 1.7534 -2.5349 0.0003 23 8 0.4949 -2.6114 -0.6724 24 14 2.9938 -3.6115 -0.8788 25 1 4.3017 -3.5320 -0.1799 26 1 2.5168 -5.0179 -0.8787 27 1 3.1515 -3.1431 -2.2791 28 1 -0.3633 -0.0008 1.0277 29 1 -0.3634 0.8904 -0.5132 30 1 -0.3633 -0.8896 -0.5145 31 1 3.5204 3.3251 0.0002 32 1 6.1729 3.7133 0.8887 33 1 6.1722 3.7137 -0.8913 34 1 4.4598 5.5066 -0.8911 35 1 4.4600 5.5068 0.8889 36 1 6.3541 6.3769 2.1304 37 1 8.2818 7.9089 2.1292 38 1 8.6387 11.1035 0.8858 39 1 10.0938 11.6112 -0.0054 40 1 8.6379 11.1030 -0.8941 41 1 11.2506 7.8447 1.5164 42 1 11.7418 9.5558 1.5160 43 1 10.2870 9.0479 2.4066 44 1 10.2847 9.0468 -2.4157 45 1 11.7403 9.5552 -1.5267 46 1 11.2491 7.8441 -1.5258 47 1 8.2801 7.9074 -2.1357 48 1 6.3585 6.3679 -2.1345 49 1 4.4108 -1.3180 0.0092 50 1 1.6376 -2.8787 1.0281 51 1 0.1225 -3.5032 -0.7096 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_12221182_13259642.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 13:27:11 Heat of formation + Delta-G solvation = -11.871087 kcal Electronic energy + Delta-G solvation = -28457.303535 eV Core-core repulsion = 24481.547892 eV Total energy + Delta-G solvation = -3975.755643 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 361.173 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -43.86006 -40.71332 -39.97863 -37.95299 -36.59971 -34.49797 -33.64482 -32.71822 -31.80123 -29.85075 -29.27667 -28.29888 -28.28143 -28.23998 -26.72169 -25.08049 -23.51831 -23.41090 -22.26201 -21.84268 -20.76615 -18.65179 -18.47432 -17.75114 -17.44794 -17.29415 -16.91730 -16.74546 -16.18390 -15.84107 -15.81327 -15.44553 -15.32414 -14.82840 -14.66354 -14.25332 -14.24200 -14.15880 -14.02308 -13.98305 -13.73039 -13.69087 -13.56510 -13.42002 -13.18441 -13.12168 -12.97546 -12.96120 -12.79848 -12.64389 -12.52300 -12.38340 -12.02685 -11.79257 -11.78733 -11.47216 -10.88810 -10.86900 -10.76075 -10.71962 -10.40906 -10.07954 -9.87631 -9.74386 -9.51198 0.34180 0.37819 0.57905 0.71936 1.16309 1.43938 1.54277 1.59103 1.86990 1.98743 2.02488 2.02797 2.13853 2.21902 2.68055 2.96360 3.01615 3.22312 3.53640 3.87563 3.88881 3.95364 4.10877 4.19776 4.22158 4.32126 4.35384 4.41640 4.49178 4.52049 4.59196 4.60093 4.63884 4.83015 4.83943 4.85853 4.88157 4.88932 4.90081 4.90152 4.92454 4.93095 5.13383 5.16757 5.24243 5.25457 5.50792 5.58927 5.62136 5.66895 5.66948 5.70614 5.72584 6.20851 6.30002 6.71644 6.79290 7.02613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.258 5.258 3 N -0.264 5.264 4 C -0.039 4.039 5 C 0.603 3.397 6 O -0.571 6.571 7 N -0.706 5.706 8 C 0.130 3.870 9 C -0.081 4.081 10 C -0.085 4.085 11 C -0.140 4.140 12 C -0.101 4.101 13 C -0.385 4.385 14 Si 1.122 2.878 15 C -0.460 4.460 16 C -0.462 4.462 17 C -0.462 4.462 18 C -0.101 4.101 19 C -0.140 4.140 20 C -0.209 4.209 21 C 0.030 3.970 22 C -0.044 4.044 23 O -0.557 6.557 24 Si 0.991 3.009 25 H -0.265 1.265 26 H -0.231 1.231 27 H -0.284 1.284 28 H 0.098 0.902 29 H 0.099 0.901 30 H 0.135 0.865 31 H 0.417 0.583 32 H 0.062 0.938 33 H 0.060 0.940 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.128 0.872 37 H 0.135 0.865 38 H 0.067 0.933 39 H 0.074 0.926 40 H 0.067 0.933 41 H 0.066 0.934 42 H 0.074 0.926 43 H 0.071 0.929 44 H 0.071 0.929 45 H 0.074 0.926 46 H 0.066 0.934 47 H 0.134 0.866 48 H 0.127 0.873 49 H 0.164 0.836 50 H 0.119 0.881 51 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.101 -1.268 1.063 6.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.047 5.047 3 N -0.102 5.102 4 C -0.197 4.197 5 C 0.388 3.612 6 O -0.448 6.448 7 N -0.358 5.358 8 C 0.007 3.993 9 C -0.119 4.119 10 C -0.086 4.086 11 C -0.158 4.158 12 C -0.119 4.119 13 C -0.425 4.425 14 Si 1.309 2.691 15 C -0.567 4.567 16 C -0.569 4.569 17 C -0.569 4.569 18 C -0.119 4.119 19 C -0.158 4.158 20 C -0.237 4.237 21 C -0.096 4.096 22 C -0.155 4.155 23 O -0.368 6.368 24 Si 0.814 3.186 25 H -0.189 1.189 26 H -0.154 1.154 27 H -0.210 1.210 28 H 0.116 0.884 29 H 0.118 0.882 30 H 0.153 0.847 31 H 0.254 0.746 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.110 0.890 35 H 0.110 0.890 36 H 0.145 0.855 37 H 0.152 0.848 38 H 0.086 0.914 39 H 0.093 0.907 40 H 0.086 0.914 41 H 0.085 0.915 42 H 0.094 0.906 43 H 0.091 0.909 44 H 0.090 0.910 45 H 0.094 0.906 46 H 0.085 0.915 47 H 0.152 0.848 48 H 0.145 0.855 49 H 0.182 0.818 50 H 0.137 0.863 51 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -5.532 -0.582 0.578 5.593 hybrid contribution -0.257 -0.805 0.227 0.875 sum -5.789 -1.387 0.806 6.007 Atomic orbital electron populations 1.22889 0.70268 1.07748 1.06016 1.45738 1.09255 1.01656 1.48018 1.73439 1.02438 1.14892 1.19400 1.21695 0.91039 0.94094 1.12864 1.17044 0.86325 0.82160 0.75653 1.90784 1.24064 1.77893 1.52103 1.45763 1.11425 1.04686 1.73876 1.21338 0.87914 0.88030 1.02056 1.20718 0.95813 0.90404 1.04961 1.19796 0.97194 0.97899 0.93700 1.21391 0.97657 0.98939 0.97803 1.21369 0.95290 0.96233 0.98991 1.27912 1.12170 1.08508 0.93916 0.77219 0.62226 0.63600 0.66023 1.26258 1.06427 1.19610 1.04388 1.26277 1.09888 1.04917 1.15802 1.26281 1.09884 1.04915 1.15836 1.21367 0.95320 0.96216 0.99003 1.21387 0.97703 0.98953 0.97803 1.21606 0.97260 0.93962 1.10857 1.21207 0.90245 0.90978 1.07151 1.24263 0.94489 0.93049 1.03707 1.86234 1.34057 1.37316 1.79225 0.85120 0.77164 0.78100 0.78247 1.18916 1.15377 1.20953 0.88374 0.88242 0.84677 0.74583 0.92011 0.92117 0.89047 0.88963 0.85455 0.84759 0.91389 0.90671 0.91416 0.91485 0.90649 0.90939 0.90971 0.90650 0.91494 0.84805 0.85534 0.81829 0.86350 0.73580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 -0.32 11.00 127.77 1.41 1.09 16 2 N -0.26 -0.92 3.70 -355.92 -1.32 -2.24 16 3 N -0.26 -1.97 11.67 -48.18 -0.56 -2.54 16 4 C -0.04 -0.42 7.13 42.46 0.30 -0.11 16 5 C 0.60 7.57 7.82 86.75 0.68 8.25 16 6 O -0.57 -11.14 16.93 -3.93 -0.07 -11.21 16 7 N -0.71 -4.11 5.55 -466.10 -2.59 -6.70 16 8 C 0.13 0.60 5.66 86.38 0.49 1.09 16 9 C -0.08 0.00 5.46 29.85 0.16 0.17 16 10 C -0.09 -0.28 5.13 -19.86 -0.10 -0.38 16 11 C -0.14 -0.47 9.70 22.27 0.22 -0.25 16 12 C -0.10 -0.24 9.29 22.27 0.21 -0.03 16 13 C -0.39 -0.51 4.59 22.27 0.10 -0.41 16 14 Si 1.12 -4.32 12.32 68.60 0.85 -3.47 16 15 C -0.46 1.03 8.65 113.37 0.98 2.01 16 16 C -0.46 1.12 8.53 113.37 0.97 2.08 16 17 C -0.46 1.08 8.53 113.37 0.97 2.05 16 18 C -0.10 -0.25 9.29 22.27 0.21 -0.04 16 19 C -0.14 -0.49 9.70 22.27 0.22 -0.27 16 20 C -0.21 -1.77 9.35 22.41 0.21 -1.56 16 21 C 0.03 0.10 6.21 41.40 0.26 0.36 16 22 C -0.04 0.22 2.98 71.23 0.21 0.43 16 23 O -0.56 4.58 9.76 -148.98 -1.45 3.13 16 24 Si 0.99 -2.60 26.64 68.60 1.83 -0.78 16 25 H -0.26 -0.23 6.87 99.48 0.68 0.45 16 26 H -0.23 1.28 7.11 99.48 0.71 1.98 16 27 H -0.28 -1.09 7.11 99.48 0.71 -0.38 16 28 H 0.10 -0.75 8.14 -2.39 -0.02 -0.77 16 29 H 0.10 -0.59 8.14 -2.38 -0.02 -0.61 16 30 H 0.14 -0.91 5.19 -2.39 -0.01 -0.92 16 31 H 0.42 0.67 8.20 -92.70 -0.76 -0.09 16 32 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 33 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 34 H 0.09 -0.19 8.08 -2.39 -0.02 -0.21 16 35 H 0.09 -0.21 8.08 -2.39 -0.02 -0.23 16 36 H 0.13 0.07 8.06 -2.91 -0.02 0.05 16 37 H 0.13 -0.21 7.43 -2.91 -0.02 -0.23 16 38 H 0.07 -0.12 7.96 -2.39 -0.02 -0.13 16 39 H 0.07 -0.22 7.96 -2.38 -0.02 -0.24 16 40 H 0.07 -0.11 7.96 -2.39 -0.02 -0.13 16 41 H 0.07 -0.09 7.96 -2.39 -0.02 -0.11 16 42 H 0.07 -0.23 7.96 -2.39 -0.02 -0.25 16 43 H 0.07 -0.21 7.69 -2.39 -0.02 -0.23 16 44 H 0.07 -0.20 7.69 -2.39 -0.02 -0.22 16 45 H 0.07 -0.22 7.96 -2.39 -0.02 -0.24 16 46 H 0.07 -0.08 7.96 -2.39 -0.02 -0.10 16 47 H 0.13 -0.18 7.43 -2.91 -0.02 -0.21 16 48 H 0.13 0.11 8.06 -2.91 -0.02 0.08 16 49 H 0.16 1.27 6.87 -2.91 -0.02 1.25 16 50 H 0.12 -1.22 7.96 -2.39 -0.02 -1.24 16 51 H 0.41 -7.23 8.74 -74.05 -0.65 -7.87 16 Total: 0.00 -23.50 424.49 4.43 -19.08 By element: Atomic # 1 Polarization: -10.00 SS G_CDS: 0.26 Total: -9.74 kcal Atomic # 6 Polarization: 6.99 SS G_CDS: 7.48 Total: 14.47 kcal Atomic # 7 Polarization: -7.01 SS G_CDS: -4.47 Total: -11.48 kcal Atomic # 8 Polarization: -6.56 SS G_CDS: -1.52 Total: -8.08 kcal Atomic # 14 Polarization: -6.92 SS G_CDS: 2.67 Total: -4.25 kcal Total: -23.50 4.43 -19.08 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_12221182_13259642.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.205 kcal (2) G-P(sol) polarization free energy of solvation -23.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds