Wall clock time and date at job start Thu Mar 4 2021 14:04:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46500 * 119.99772 * 2 1 4 4 C 1.53000 * 109.47042 * 270.00119 * 3 2 1 5 5 H 1.08997 * 112.91050 * 316.24946 * 4 3 2 6 6 C 1.53780 * 113.61575 * 87.50850 * 4 3 2 7 7 C 1.54049 * 87.08248 * 139.97188 * 6 4 3 8 8 H 1.09001 * 113.60855 * 89.06855 * 7 6 4 9 9 O 1.42888 * 113.69985 * 220.05235 * 7 6 4 10 10 C 1.53783 * 113.61232 * 185.00171 * 4 3 2 11 11 C 1.34775 * 120.00047 * 180.02562 * 2 1 3 12 12 O 1.21568 * 120.00088 * 175.94305 * 11 2 1 13 13 C 1.47713 * 120.00133 * 355.94165 * 11 2 1 14 14 N 1.31809 * 126.51422 * 5.55460 * 13 11 2 15 15 N 1.28471 * 110.06764 * 179.85735 * 14 13 11 16 16 C 1.46509 * 124.87983 * 180.19817 * 15 14 13 17 17 C 1.35033 * 110.23297 * 0.41568 * 15 14 13 18 18 C 1.50693 * 126.38322 * 179.76780 * 17 15 14 19 19 O 1.42901 * 109.47476 * 30.00255 * 18 17 15 20 20 Si 1.86302 * 109.46941 * 150.00231 * 18 17 15 21 21 C 1.35363 * 107.22629 * 359.75037 * 17 15 14 22 22 H 1.08999 * 109.46824 * 95.67578 * 1 2 3 23 23 H 1.08995 * 109.46819 * 215.67374 * 1 2 3 24 24 H 1.08998 * 109.47104 * 335.67665 * 1 2 3 25 25 H 1.09000 * 109.46872 * 150.00214 * 3 2 1 26 26 H 1.08991 * 109.47270 * 30.00474 * 3 2 1 27 27 H 1.08998 * 113.60997 * 254.52959 * 6 4 3 28 28 H 1.09004 * 113.61272 * 25.42761 * 6 4 3 29 29 H 0.96704 * 113.99740 * 277.42745 * 9 7 6 30 30 H 1.09001 * 113.61549 * 334.56817 * 10 4 3 31 31 H 1.09004 * 113.61804 * 105.38833 * 10 4 3 32 32 H 1.08992 * 109.47333 * 270.24442 * 16 15 14 33 33 H 1.08993 * 109.46873 * 30.25329 * 16 15 14 34 34 H 1.09003 * 109.46274 * 150.24225 * 16 15 14 35 35 H 1.09001 * 109.47365 * 270.00025 * 18 17 15 36 36 H 0.96701 * 113.99812 * 59.99552 * 19 18 17 37 37 H 1.48504 * 110.00275 * 179.97438 * 20 18 17 38 38 H 1.48500 * 109.99997 * 301.31933 * 20 18 17 39 39 H 1.08003 * 127.24602 * 179.97438 * 21 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7104 -1.4425 5 1 2.7826 0.8936 -2.0843 6 6 1.3071 2.5421 -2.0437 7 6 2.3921 3.4210 -2.6944 8 1 2.7057 3.0708 -3.6778 9 8 2.0902 4.8174 -2.6713 10 6 3.3232 2.9730 -1.5554 11 6 2.1389 -1.1672 -0.0005 12 8 3.3523 -1.1685 -0.0750 13 6 1.4032 -2.4449 0.0894 14 7 0.0943 -2.5990 0.0725 15 7 -0.2041 -3.8451 0.1667 16 6 -1.5673 -4.3818 0.1754 17 6 0.9192 -4.5884 0.2615 18 6 0.9904 -6.0879 0.3926 19 8 -0.1337 -6.6775 -0.2638 20 14 2.5627 -6.7059 -0.3929 21 6 1.9693 -3.7354 0.2163 22 1 -0.3633 -0.1016 -1.0226 23 1 -0.3633 -0.8348 0.5993 24 1 -0.3633 0.9364 0.4233 25 1 3.1499 1.1384 0.5138 26 1 1.6085 2.0283 0.5139 27 1 0.7001 1.9930 -2.7635 28 1 0.7100 3.0664 -1.2976 29 1 1.5049 5.1051 -3.3853 30 1 3.2772 3.6152 -0.6758 31 1 4.3442 2.7718 -1.8796 32 1 -1.9335 -4.4271 1.2010 33 1 -2.2164 -3.7344 -0.4141 34 1 -1.5660 -5.3835 -0.2546 35 1 0.9796 -6.3613 1.4477 36 1 -0.1881 -6.4758 -1.2079 37 1 2.6453 -8.1836 -0.2697 38 1 2.6043 -6.3120 -1.8241 39 1 3.0184 -3.9869 0.2670 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_12312124_13259642.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 14:04:04 Heat of formation + Delta-G solvation = 10.961948 kcal Electronic energy + Delta-G solvation = -22629.016498 eV Core-core repulsion = 19155.991540 eV Total energy + Delta-G solvation = -3473.024958 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.86865 -41.06360 -39.88343 -38.25454 -36.90024 -35.68342 -34.36278 -32.68899 -29.97511 -28.50416 -27.33951 -26.69865 -26.63958 -24.44806 -22.91667 -22.01613 -20.60873 -20.29348 -18.79323 -18.50041 -17.83768 -17.54423 -17.14976 -17.03974 -16.57937 -16.15791 -15.93181 -15.71607 -15.20621 -14.96735 -14.85283 -14.49888 -14.13918 -14.02920 -13.72879 -13.49292 -13.40930 -13.39742 -13.05544 -12.75875 -12.57775 -12.39620 -12.15653 -11.85565 -11.74974 -11.28146 -11.26960 -10.92216 -10.76662 -10.20407 -9.97319 -9.67371 -4.89606 0.43467 0.81276 1.21268 1.53791 1.66682 1.90747 2.00890 2.26433 3.02438 3.22995 3.30787 3.34788 3.53542 3.59790 3.81642 3.88346 3.95209 4.21468 4.32437 4.34538 4.34981 4.39070 4.43695 4.49434 4.62048 4.66100 4.67609 4.74105 4.77878 4.80614 4.82304 4.97339 4.99414 5.11848 5.26710 5.37590 5.55290 5.72989 6.22703 6.24467 6.76339 6.87355 7.06611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.599 5.599 3 C 0.128 3.872 4 C -0.118 4.118 5 H 0.078 0.922 6 C -0.151 4.151 7 C 0.073 3.927 8 H 0.088 0.912 9 O -0.579 6.579 10 C -0.125 4.125 11 C 0.595 3.405 12 O -0.566 6.566 13 C -0.040 4.040 14 N -0.257 5.257 15 N -0.267 5.267 16 C 0.064 3.936 17 C -0.012 4.012 18 C -0.043 4.043 19 O -0.535 6.535 20 Si 0.781 3.219 21 C -0.187 4.187 22 H 0.056 0.944 23 H 0.091 0.909 24 H 0.087 0.913 25 H 0.073 0.927 26 H 0.102 0.898 27 H 0.071 0.929 28 H 0.094 0.906 29 H 0.394 0.606 30 H 0.091 0.909 31 H 0.073 0.927 32 H 0.093 0.907 33 H 0.103 0.897 34 H 0.129 0.871 35 H 0.146 0.854 36 H 0.390 0.610 37 H -0.282 1.282 38 H -0.295 1.295 39 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.091 -1.852 0.040 5.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.330 5.330 3 C 0.006 3.994 4 C -0.138 4.138 5 H 0.096 0.904 6 C -0.189 4.189 7 C 0.014 3.986 8 H 0.106 0.894 9 O -0.387 6.387 10 C -0.163 4.163 11 C 0.382 3.618 12 O -0.444 6.444 13 C -0.197 4.197 14 N -0.095 5.095 15 N -0.056 5.056 16 C -0.074 4.074 17 C -0.137 4.137 18 C -0.153 4.153 19 O -0.343 6.343 20 Si 0.684 3.316 21 C -0.215 4.215 22 H 0.075 0.925 23 H 0.109 0.891 24 H 0.105 0.895 25 H 0.092 0.908 26 H 0.120 0.880 27 H 0.090 0.910 28 H 0.113 0.887 29 H 0.244 0.756 30 H 0.110 0.890 31 H 0.091 0.909 32 H 0.112 0.888 33 H 0.122 0.878 34 H 0.147 0.853 35 H 0.163 0.837 36 H 0.240 0.760 37 H -0.209 1.209 38 H -0.221 1.221 39 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -5.001 -2.035 0.432 5.417 hybrid contribution -0.573 -0.264 -1.261 1.410 sum -5.574 -2.300 -0.829 6.086 Atomic orbital electron populations 1.22231 0.77082 1.04451 1.02818 1.47766 1.08529 1.05133 1.71566 1.21598 0.97621 0.84054 0.96142 1.22572 0.97970 0.96252 0.97000 0.90397 1.23722 0.96707 0.97596 1.00836 1.23415 0.96306 0.80615 0.98226 0.89422 1.86485 1.71598 1.24221 1.56387 1.23075 0.98354 0.95711 0.99129 1.17237 0.85853 0.82604 0.76111 1.90773 1.14268 1.87216 1.52154 1.21790 0.90309 0.95185 1.12415 1.73678 1.15608 1.00657 1.19557 1.45893 1.08779 1.02612 1.48331 1.22877 0.76107 1.02510 1.05954 1.22110 0.86530 0.96640 1.08450 1.24830 1.00456 0.85019 1.04981 1.86557 1.45061 1.74882 1.27833 0.93179 0.80619 0.78081 0.79745 1.21681 1.00901 0.90184 1.08750 0.92513 0.89070 0.89454 0.90847 0.87970 0.91026 0.88719 0.75600 0.89012 0.90875 0.88816 0.87833 0.85325 0.83693 0.75978 1.20883 1.22127 0.80303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 -0.02 9.72 127.77 1.24 1.22 16 2 N -0.60 -2.74 2.87 -850.36 -2.44 -5.18 16 3 C 0.13 0.32 5.25 86.38 0.45 0.78 16 4 C -0.12 -0.25 3.97 -10.27 -0.04 -0.29 16 5 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 6 C -0.15 0.13 7.48 31.21 0.23 0.36 16 7 C 0.07 0.06 5.23 31.21 0.16 0.22 16 8 H 0.09 -0.08 8.14 -2.39 -0.02 -0.10 16 9 O -0.58 -1.32 13.67 -148.98 -2.04 -3.36 16 10 C -0.12 -0.27 7.46 31.12 0.23 -0.04 16 11 C 0.59 5.97 7.67 86.75 0.67 6.64 16 12 O -0.57 -9.07 16.55 -3.93 -0.07 -9.13 16 13 C -0.04 -0.29 6.83 42.46 0.29 0.00 16 14 N -0.26 -1.03 8.47 -48.18 -0.41 -1.44 16 15 N -0.27 -0.03 3.70 -355.93 -1.32 -1.35 16 16 C 0.06 -0.45 11.00 127.77 1.41 0.96 16 17 C -0.01 0.00 6.18 41.40 0.26 0.26 16 18 C -0.04 0.20 2.99 71.23 0.21 0.42 16 19 O -0.54 2.79 10.02 -148.98 -1.49 1.30 16 20 Si 0.78 -2.81 31.23 68.60 2.14 -0.67 16 21 C -0.19 -0.70 9.35 22.41 0.21 -0.49 16 22 H 0.06 -0.02 8.14 -2.39 -0.02 -0.04 16 23 H 0.09 0.12 5.27 -2.39 -0.01 0.10 16 24 H 0.09 -0.38 7.83 -2.39 -0.02 -0.40 16 25 H 0.07 0.43 7.48 -2.39 -0.02 0.41 16 26 H 0.10 -0.18 7.56 -2.39 -0.02 -0.20 16 27 H 0.07 -0.11 8.14 -2.39 -0.02 -0.12 16 28 H 0.09 -0.15 7.90 -2.39 -0.02 -0.17 16 29 H 0.39 -2.35 9.12 -74.05 -0.68 -3.02 16 30 H 0.09 0.21 8.10 -2.39 -0.02 0.19 16 31 H 0.07 0.19 8.14 -2.38 -0.02 0.17 16 32 H 0.09 -0.77 8.14 -2.39 -0.02 -0.79 16 33 H 0.10 -0.92 8.14 -2.39 -0.02 -0.94 16 34 H 0.13 -1.22 5.00 -2.39 -0.01 -1.23 16 35 H 0.15 -1.08 7.96 -2.39 -0.02 -1.10 16 36 H 0.39 -3.85 8.39 -74.06 -0.62 -4.47 16 37 H -0.28 -0.57 7.11 99.48 0.71 0.13 16 38 H -0.29 -0.88 7.11 99.48 0.71 -0.18 16 39 H 0.18 0.12 7.03 -2.91 -0.02 0.10 16 Total: 0.00 -20.52 322.49 -0.47 -20.99 By element: Atomic # 1 Polarization: -11.02 SS G_CDS: -0.18 Total: -11.19 kcal Atomic # 6 Polarization: 4.71 SS G_CDS: 5.32 Total: 10.03 kcal Atomic # 7 Polarization: -3.80 SS G_CDS: -4.17 Total: -7.97 kcal Atomic # 8 Polarization: -7.60 SS G_CDS: -3.60 Total: -11.19 kcal Atomic # 14 Polarization: -2.81 SS G_CDS: 2.14 Total: -0.67 kcal Total: -20.52 -0.47 -20.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_12312124_13259642.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.950 kcal (2) G-P(sol) polarization free energy of solvation -20.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.988 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds