Wall clock time and date at job start Thu Mar 4 2021 15:47:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42897 * 114.00121 * 2 1 4 4 H 1.08996 * 112.85135 * 18.79759 * 3 2 1 5 5 C 1.53786 * 113.61606 * 149.99701 * 3 2 1 6 6 C 1.53785 * 87.07934 * 140.06016 * 5 3 2 7 7 H 1.09005 * 113.61059 * 89.19994 * 6 5 3 8 8 C 1.52996 * 113.61467 * 220.01586 * 6 5 3 9 9 N 1.46496 * 109.47038 * 183.47362 * 8 6 5 10 10 C 1.34778 * 119.99865 * 180.02562 * 9 8 6 11 11 O 1.21571 * 119.99901 * 359.97438 * 10 9 8 12 12 C 1.47710 * 119.99944 * 180.02562 * 10 9 8 13 13 N 1.31811 * 126.52146 * 359.97151 * 12 10 9 14 14 N 1.28465 * 110.07556 * 180.02562 * 13 12 10 15 15 C 1.46499 * 124.88399 * 179.97438 * 14 13 12 16 16 C 1.35034 * 110.22852 * 0.22725 * 14 13 12 17 17 C 1.50703 * 126.38041 * 179.75781 * 16 14 13 18 18 O 1.42899 * 109.47543 * 329.99882 * 17 16 14 19 19 Si 1.86303 * 109.46896 * 209.99944 * 17 16 14 20 20 C 1.35368 * 107.23277 * 359.63286 * 16 14 13 21 21 C 1.53785 * 87.17460 * 334.61263 * 6 5 3 22 22 H 1.09005 * 109.46691 * 60.00110 * 1 2 3 23 23 H 1.08996 * 109.47673 * 180.02562 * 1 2 3 24 24 H 1.08995 * 109.47391 * 300.00754 * 1 2 3 25 25 H 1.08999 * 113.60742 * 25.51440 * 5 3 2 26 26 H 1.08998 * 113.68690 * 254.62236 * 5 3 2 27 27 H 1.09000 * 109.47011 * 63.47544 * 8 6 5 28 28 H 1.08997 * 109.47240 * 303.47664 * 8 6 5 29 29 H 0.96997 * 120.00665 * 0.02562 * 9 8 6 30 30 H 1.09002 * 109.47391 * 90.01884 * 15 14 13 31 31 H 1.09001 * 109.46813 * 330.01941 * 15 14 13 32 32 H 1.09004 * 109.47041 * 210.02068 * 15 14 13 33 33 H 1.09001 * 109.47189 * 90.00465 * 17 16 14 34 34 H 0.96693 * 114.00220 * 180.02562 * 18 17 16 35 35 H 1.48498 * 109.99895 * 59.99758 * 19 17 16 36 36 H 1.48495 * 109.99998 * 181.32004 * 19 17 16 37 37 H 1.07991 * 127.24749 * 180.16245 * 20 16 14 38 38 H 1.08999 * 113.61244 * 139.93833 * 21 6 5 39 39 H 1.08995 * 113.60720 * 270.84130 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3138 2.0789 0.3236 5 6 3.3756 1.3719 0.7046 6 6 3.8221 2.3198 -0.4211 7 1 3.6222 3.3707 -0.2118 8 6 5.2538 2.0712 -0.8998 9 7 5.6120 3.0715 -1.9084 10 6 6.8343 3.0483 -2.4760 11 8 7.6395 2.1976 -2.1506 12 6 7.1957 4.0572 -3.4925 13 7 6.4279 5.0314 -3.9384 14 7 7.0587 5.7221 -4.8189 15 6 6.5090 6.8818 -5.5255 16 6 8.2994 5.2221 -5.0035 17 6 9.3431 5.7488 -5.9546 18 8 8.7013 6.3464 -7.0828 19 14 10.4260 4.3452 -6.5275 20 6 8.4319 4.1613 -4.1731 21 6 2.7530 1.6531 -1.3029 22 1 -0.3633 0.5139 -0.8901 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 3.9094 0.4216 0.7126 26 1 3.3395 1.8455 1.6857 27 1 5.3232 1.0746 -1.3358 28 1 5.9378 2.1463 -0.0545 29 1 4.9697 3.7504 -2.1677 30 1 6.7278 7.7884 -4.9612 31 1 5.4297 6.7679 -5.6258 32 1 6.9606 6.9519 -6.5151 33 1 9.9541 6.4950 -5.4466 34 1 9.3138 6.7074 -7.7382 35 1 9.6049 3.3210 -7.2216 36 1 11.4791 4.8565 -7.4411 37 1 9.2976 3.5262 -4.0570 38 1 2.2138 2.3539 -1.9403 39 1 3.1165 0.7800 -1.8446 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_12345242_13259642.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 15:47:08 Heat of formation + Delta-G solvation = -2.043264 kcal Electronic energy + Delta-G solvation = -21813.157396 eV Core-core repulsion = 18339.568489 eV Total energy + Delta-G solvation = -3473.588907 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.82102 -40.92558 -40.06227 -38.10216 -37.45478 -35.32984 -34.38348 -32.78400 -29.75392 -28.25399 -27.40210 -26.73464 -26.53912 -24.36482 -22.99741 -22.17849 -21.15912 -20.28833 -18.75103 -18.54639 -17.75377 -17.48521 -17.39677 -16.83510 -16.63267 -16.35835 -16.08920 -15.89333 -15.47310 -15.18543 -14.81287 -14.64785 -14.25428 -14.02500 -13.60754 -13.54857 -13.42453 -13.36888 -12.91528 -12.84197 -12.45368 -12.41802 -11.99368 -11.85796 -11.73241 -11.43287 -11.27538 -10.99708 -10.42694 -10.32647 -10.01247 -9.87624 -4.88489 0.43194 0.80122 1.26630 1.54024 1.65368 1.98063 2.09693 2.29711 2.87901 2.93833 3.26122 3.49919 3.52199 3.60143 3.82011 3.82919 4.04945 4.13834 4.29569 4.31352 4.37013 4.37360 4.46935 4.49542 4.54076 4.65249 4.67759 4.74092 4.81892 4.83163 4.83949 4.86444 5.01476 5.14202 5.24344 5.28071 5.42669 5.68253 6.31146 6.36273 6.50054 6.82003 7.10119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.404 6.404 3 C 0.055 3.945 4 H 0.105 0.895 5 C -0.126 4.126 6 C -0.110 4.110 7 H 0.118 0.882 8 C 0.133 3.867 9 N -0.705 5.705 10 C 0.602 3.398 11 O -0.566 6.566 12 C -0.039 4.039 13 N -0.269 5.269 14 N -0.265 5.265 15 C 0.070 3.930 16 C 0.025 3.975 17 C -0.046 4.046 18 O -0.553 6.553 19 Si 0.775 3.225 20 C -0.192 4.192 21 C -0.152 4.152 22 H 0.048 0.952 23 H 0.089 0.911 24 H 0.052 0.948 25 H 0.084 0.916 26 H 0.090 0.910 27 H 0.060 0.940 28 H 0.070 0.930 29 H 0.415 0.585 30 H 0.098 0.902 31 H 0.098 0.902 32 H 0.128 0.872 33 H 0.118 0.882 34 H 0.406 0.594 35 H -0.312 1.312 36 H -0.264 1.264 37 H 0.184 0.816 38 H 0.080 0.920 39 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.680 6.742 -1.136 6.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.323 6.323 3 C -0.002 4.002 4 H 0.123 0.877 5 C -0.164 4.164 6 C -0.128 4.128 7 H 0.136 0.864 8 C 0.010 3.990 9 N -0.357 5.357 10 C 0.387 3.613 11 O -0.444 6.444 12 C -0.197 4.197 13 N -0.107 5.107 14 N -0.054 5.054 15 C -0.068 4.068 16 C -0.101 4.101 17 C -0.155 4.155 18 O -0.365 6.365 19 Si 0.678 3.322 20 C -0.220 4.220 21 C -0.189 4.189 22 H 0.066 0.934 23 H 0.107 0.893 24 H 0.071 0.929 25 H 0.103 0.897 26 H 0.108 0.892 27 H 0.079 0.921 28 H 0.089 0.911 29 H 0.251 0.749 30 H 0.116 0.884 31 H 0.116 0.884 32 H 0.146 0.854 33 H 0.135 0.865 34 H 0.260 0.740 35 H -0.240 1.240 36 H -0.190 1.190 37 H 0.201 0.799 38 H 0.099 0.901 39 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -1.366 5.921 -1.192 6.192 hybrid contribution -0.106 0.805 -1.088 1.357 sum -1.471 6.725 -2.280 7.252 Atomic orbital electron populations 1.22933 0.79985 1.03525 1.00760 1.87923 1.21120 1.28581 1.94709 1.23900 0.94316 0.85192 0.96822 0.87730 1.23201 0.94968 0.99875 0.98391 1.22499 0.92057 1.00966 0.97295 0.86360 1.21389 0.95775 0.91244 0.90606 1.45769 1.14557 1.33723 1.41629 1.17032 0.82126 0.82426 0.79697 1.90785 1.51114 1.38672 1.63826 1.21791 0.94853 0.99100 1.03971 1.73434 1.24718 1.06197 1.06315 1.45689 1.09569 1.23087 1.27007 1.22796 1.01780 0.83475 0.98732 1.21184 0.88915 0.97891 1.02077 1.24437 0.96327 1.07293 0.87490 1.86334 1.38105 1.78165 1.33919 0.93345 0.77420 0.75457 0.85987 1.21651 0.99873 1.00201 1.00256 1.23616 0.97411 1.00691 0.97214 0.93368 0.89261 0.92913 0.89737 0.89185 0.92140 0.91134 0.74867 0.88391 0.88355 0.85439 0.86480 0.74040 1.23959 1.18951 0.79914 0.90125 0.90492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.01 10.85 113.37 1.23 1.22 16 2 O -0.40 -2.03 10.72 -148.98 -1.60 -3.63 16 3 C 0.06 0.00 4.31 31.18 0.13 0.14 16 4 H 0.10 -0.37 7.87 -2.39 -0.02 -0.39 16 5 C -0.13 0.12 7.48 31.12 0.23 0.35 16 6 C -0.11 0.23 3.75 -10.27 -0.04 0.19 16 7 H 0.12 -0.63 8.14 -2.38 -0.02 -0.65 16 8 C 0.13 0.37 5.50 86.38 0.47 0.84 16 9 N -0.71 -3.21 5.55 -466.12 -2.59 -5.80 16 10 C 0.60 6.47 7.82 86.75 0.68 7.15 16 11 O -0.57 -9.59 16.93 -3.94 -0.07 -9.66 16 12 C -0.04 -0.36 7.13 42.46 0.30 -0.05 16 13 N -0.27 -1.91 11.67 -48.17 -0.56 -2.47 16 14 N -0.26 -1.00 3.70 -355.91 -1.32 -2.32 16 15 C 0.07 -0.24 11.01 127.77 1.41 1.16 16 16 C 0.02 0.07 6.21 41.40 0.26 0.33 16 17 C -0.05 0.20 2.98 71.24 0.21 0.41 16 18 O -0.55 3.03 9.76 -148.98 -1.45 1.57 16 19 Si 0.77 -2.56 31.24 68.60 2.14 -0.41 16 20 C -0.19 -1.12 9.35 22.41 0.21 -0.91 16 21 C -0.15 0.05 7.48 31.18 0.23 0.28 16 22 H 0.05 -0.10 8.14 -2.38 -0.02 -0.11 16 23 H 0.09 -0.14 8.14 -2.39 -0.02 -0.16 16 24 H 0.05 -0.14 8.14 -2.39 -0.02 -0.16 16 25 H 0.08 0.14 8.10 -2.39 -0.02 0.12 16 26 H 0.09 -0.30 8.14 -2.39 -0.02 -0.32 16 27 H 0.06 0.35 7.87 -2.39 -0.02 0.33 16 28 H 0.07 0.27 8.14 -2.39 -0.02 0.25 16 29 H 0.41 0.43 8.20 -92.71 -0.76 -0.33 16 30 H 0.10 -0.65 8.14 -2.39 -0.02 -0.67 16 31 H 0.10 -0.47 8.14 -2.39 -0.02 -0.49 16 32 H 0.13 -0.60 5.18 -2.38 -0.01 -0.61 16 33 H 0.12 -1.12 7.96 -2.39 -0.02 -1.14 16 34 H 0.41 -5.57 8.74 -74.06 -0.65 -6.22 16 35 H -0.31 -2.19 7.11 99.48 0.71 -1.49 16 36 H -0.26 0.41 7.11 99.48 0.71 1.11 16 37 H 0.18 0.37 7.03 -2.92 -0.02 0.35 16 38 H 0.08 -0.18 8.14 -2.39 -0.02 -0.20 16 39 H 0.08 0.25 7.92 -2.39 -0.02 0.24 16 Total: 0.00 -21.78 329.79 -0.40 -22.18 By element: Atomic # 1 Polarization: -10.26 SS G_CDS: -0.30 Total: -10.55 kcal Atomic # 6 Polarization: 5.76 SS G_CDS: 5.33 Total: 11.10 kcal Atomic # 7 Polarization: -6.12 SS G_CDS: -4.47 Total: -10.59 kcal Atomic # 8 Polarization: -8.60 SS G_CDS: -3.12 Total: -11.72 kcal Atomic # 14 Polarization: -2.56 SS G_CDS: 2.14 Total: -0.41 kcal Total: -21.78 -0.40 -22.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_12345242_13259642.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.137 kcal (2) G-P(sol) polarization free energy of solvation -21.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds