Wall clock time and date at job start Thu Mar 4 2021 14:34:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.81404 * 102.99763 * 2 1 4 4 H 1.08999 * 112.85147 * 43.80541 * 3 2 1 5 5 C 1.53785 * 113.61208 * 174.99814 * 3 2 1 6 6 C 1.53785 * 87.08003 * 140.06284 * 5 3 2 7 7 H 1.08994 * 113.61511 * 219.93494 * 6 5 3 8 8 N 1.46500 * 113.61309 * 89.11558 * 6 5 3 9 9 C 1.34776 * 120.00092 * 155.00080 * 8 6 5 10 10 O 1.21594 * 119.99859 * 0.02562 * 9 8 6 11 11 C 1.47578 * 120.00066 * 180.02562 * 9 8 6 12 12 C 1.36494 * 120.00830 * 179.97438 * 11 9 8 13 13 N 1.35950 * 120.50289 * 179.74783 * 12 11 9 14 14 C 1.37004 * 132.41270 * 179.61285 * 13 12 11 15 15 C 1.50705 * 126.42374 * 0.72069 * 14 13 12 16 16 O 1.42894 * 109.47171 * 329.71205 * 15 14 13 17 17 Si 1.86298 * 109.46780 * 209.70646 * 15 14 13 18 18 C 1.35005 * 107.14348 * 180.45645 * 14 13 12 19 19 N 1.33578 * 108.65294 * 0.24545 * 18 14 13 20 20 C 1.32412 * 109.23132 * 359.97438 * 19 18 14 21 21 C 1.41245 * 132.12343 * 180.02562 * 20 19 18 22 22 Br 1.89105 * 120.24982 * 359.97093 * 21 20 19 23 23 C 1.35695 * 119.49267 * 179.97438 * 21 20 19 24 24 C 1.53780 * 87.08094 * 334.56908 * 6 5 3 25 25 H 1.08996 * 109.47189 * 300.00090 * 1 2 3 26 26 H 1.09005 * 109.47074 * 60.00033 * 1 2 3 27 27 H 1.08997 * 109.47418 * 180.02562 * 1 2 3 28 28 H 1.09001 * 113.61390 * 25.52064 * 5 3 2 29 29 H 1.09000 * 113.61621 * 254.60954 * 5 3 2 30 30 H 0.97009 * 119.99827 * 335.00176 * 8 6 5 31 31 H 1.07996 * 119.74953 * 0.04972 * 12 11 9 32 32 H 1.09004 * 109.46779 * 89.71528 * 15 14 13 33 33 H 0.96709 * 113.99337 * 180.02562 * 16 15 14 34 34 H 1.48506 * 109.99834 * 60.00830 * 17 15 14 35 35 H 1.48502 * 110.00011 * 181.32094 * 17 15 14 36 36 H 1.08002 * 125.67178 * 180.20997 * 18 14 13 37 37 H 1.08001 * 120.23516 * 179.97438 * 23 21 20 38 38 H 1.08998 * 113.61593 * 139.98136 * 24 6 5 39 39 H 1.09004 * 113.61587 * 270.88104 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7676 0.0000 4 1 1.6108 2.3430 0.6953 5 6 3.7283 2.0520 0.1229 6 6 3.5201 3.1753 -0.9067 7 1 4.3237 3.2506 -1.6392 8 7 3.1757 4.4660 -0.3054 9 6 3.4486 5.6102 -0.9633 10 8 3.9804 5.5711 -2.0561 11 6 3.1022 6.9105 -0.3573 12 6 3.3790 8.0694 -1.0232 13 7 3.0595 9.2725 -0.4767 14 6 3.2266 10.5599 -0.9145 15 6 3.8432 10.9877 -2.2214 16 8 4.8244 10.0291 -2.6215 17 14 4.6513 12.6530 -2.0110 18 6 2.7301 11.3731 0.0420 19 7 2.2726 10.6212 1.0468 20 6 2.4636 9.3433 0.7573 21 6 2.1672 8.1571 1.4645 22 35 1.3402 8.2421 3.1631 23 6 2.4803 6.9562 0.9158 24 6 2.3003 2.3836 -1.4068 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 4.3572 1.2388 -0.2394 29 1 4.0258 2.4121 1.1077 30 1 2.7511 4.4971 0.5663 31 1 3.8510 8.0301 -1.9938 32 1 3.0676 11.0540 -2.9845 33 1 5.2636 10.2410 -3.4567 34 1 5.7108 12.5759 -0.9732 35 1 5.2355 13.1006 -3.3008 36 1 2.7070 12.4521 0.0016 37 1 2.2594 6.0417 1.4463 38 1 1.4450 3.0113 -1.6569 39 1 2.5388 1.6610 -2.1873 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_12525166_12335884.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 14:34:24 Heat of formation + Delta-G solvation = 69.515392 kcal Electronic energy + Delta-G solvation = -26098.702524 eV Core-core repulsion = 22183.328507 eV Total energy + Delta-G solvation = -3915.374017 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 398.009 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -44.25856 -41.55917 -39.61944 -38.40982 -38.00958 -35.48709 -34.52629 -32.48817 -31.88173 -30.28655 -29.82901 -27.05346 -26.81725 -26.77238 -25.11601 -24.08803 -22.59339 -22.06703 -20.78782 -19.36752 -18.78830 -18.63692 -17.93068 -17.79393 -17.45903 -16.96881 -16.43441 -16.31336 -16.04252 -15.86240 -15.57068 -15.44083 -15.18638 -14.84176 -14.61518 -14.48546 -14.13143 -14.04489 -13.77211 -13.56446 -13.41880 -13.35769 -13.03688 -12.88037 -12.54515 -12.16730 -11.84924 -11.62248 -11.60530 -11.50813 -11.38037 -11.32521 -10.91586 -10.84733 -10.34734 -10.01917 -9.06493 -8.69361 -4.94975 -0.91995 -0.40152 0.17221 0.76660 0.93421 1.15184 1.37435 1.61342 1.63805 1.76885 1.86716 1.98970 2.18486 2.76523 2.94043 3.12895 3.31074 3.33317 3.37114 3.39910 3.51639 3.68117 3.91841 3.92769 4.11558 4.28533 4.29433 4.30809 4.32095 4.42155 4.47412 4.47892 4.68848 4.70671 4.74781 4.86747 4.90090 4.93953 4.97800 5.30023 5.38778 5.55319 6.22232 6.41149 6.46649 6.89486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 S -0.302 6.302 3 C -0.073 4.073 4 H 0.121 0.879 5 C -0.108 4.108 6 C 0.124 3.876 7 H 0.101 0.899 8 N -0.689 5.689 9 C 0.585 3.415 10 O -0.563 6.563 11 C -0.174 4.174 12 C 0.167 3.833 13 N -0.360 5.360 14 C -0.051 4.051 15 C -0.055 4.055 16 O -0.565 6.565 17 Si 0.808 3.192 18 C 0.041 3.959 19 N -0.490 5.490 20 C 0.221 3.779 21 C -0.080 4.080 22 Br 0.008 6.992 23 C -0.026 4.026 24 C -0.134 4.134 25 H 0.086 0.914 26 H 0.082 0.918 27 H 0.103 0.897 28 H 0.104 0.896 29 H 0.100 0.900 30 H 0.416 0.584 31 H 0.188 0.812 32 H 0.110 0.890 33 H 0.406 0.594 34 H -0.307 1.307 35 H -0.272 1.272 36 H 0.230 0.770 37 H 0.186 0.814 38 H 0.077 0.923 39 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.593 1.203 -1.202 3.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.282 4.282 2 S -0.074 6.074 3 C -0.201 4.201 4 H 0.139 0.861 5 C -0.147 4.147 6 C 0.017 3.983 7 H 0.119 0.881 8 N -0.341 5.341 9 C 0.371 3.629 10 O -0.442 6.442 11 C -0.182 4.182 12 C 0.040 3.960 13 N -0.033 5.033 14 C -0.162 4.162 15 C -0.162 4.162 16 O -0.377 6.377 17 Si 0.710 3.290 18 C -0.108 4.108 19 N -0.209 5.209 20 C -0.024 4.024 21 C -0.163 4.163 22 Br 0.093 6.907 23 C -0.051 4.051 24 C -0.175 4.175 25 H 0.105 0.895 26 H 0.101 0.899 27 H 0.121 0.879 28 H 0.123 0.877 29 H 0.118 0.882 30 H 0.254 0.746 31 H 0.205 0.795 32 H 0.127 0.873 33 H 0.259 0.741 34 H -0.235 1.235 35 H -0.197 1.197 36 H 0.247 0.753 37 H 0.203 0.797 38 H 0.095 0.905 39 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -1.694 0.834 -0.149 1.894 hybrid contribution 0.091 -0.218 -1.467 1.485 sum -1.603 0.616 -1.616 2.358 Atomic orbital electron populations 1.23390 0.92053 1.07067 1.05688 1.87162 1.10032 1.12507 1.97717 1.24844 1.01194 0.92917 1.01189 0.86120 1.23155 0.93479 0.97256 1.00847 1.21813 0.98375 0.81349 0.96803 0.88137 1.45357 1.61846 1.04170 1.22744 1.17500 0.77718 0.83465 0.84199 1.90843 1.44208 1.87589 1.21555 1.19212 1.08867 0.92997 0.97112 1.22174 0.92680 0.81891 0.99240 1.42734 1.38711 1.06348 1.15509 1.21466 1.12306 0.81190 1.01200 1.24786 0.95052 1.03842 0.92570 1.86438 1.56023 1.48420 1.46781 0.93596 0.82323 0.74931 0.78159 1.22984 0.98286 1.01773 0.87757 1.70835 1.23625 0.98652 1.27792 1.20730 1.01624 0.94432 0.85633 1.20569 1.07886 0.91414 0.96387 1.96834 1.78266 1.99101 1.16475 1.21333 0.93260 0.97758 0.92782 1.23735 0.98791 0.99005 0.96008 0.89504 0.89888 0.87879 0.87738 0.88156 0.74558 0.79529 0.87272 0.74109 1.23531 1.19735 0.75336 0.79680 0.90464 0.88045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.44 10.76 113.37 1.22 1.66 16 2 S -0.30 -0.05 22.18 -56.49 -1.25 -1.31 16 3 C -0.07 0.37 4.15 31.12 0.13 0.50 16 4 H 0.12 -1.00 8.14 -2.39 -0.02 -1.02 16 5 C -0.11 0.64 7.42 31.12 0.23 0.87 16 6 C 0.12 -0.46 4.32 45.52 0.20 -0.26 16 7 H 0.10 0.01 7.46 -2.39 -0.02 -0.01 16 8 N -0.69 3.23 5.21 -443.15 -2.31 0.92 16 9 C 0.58 1.03 7.76 86.71 0.67 1.70 16 10 O -0.56 -5.26 15.87 -4.01 -0.06 -5.33 16 11 C -0.17 -0.19 5.84 -20.35 -0.12 -0.31 16 12 C 0.17 0.70 9.91 83.65 0.83 1.53 16 13 N -0.36 -2.05 2.93 -337.71 -0.99 -3.04 16 14 C -0.05 -0.13 6.28 41.01 0.26 0.12 16 15 C -0.06 0.19 3.05 71.24 0.22 0.40 16 16 O -0.57 0.59 10.88 -148.98 -1.62 -1.03 16 17 Si 0.81 -4.45 31.18 68.60 2.14 -2.31 16 18 C 0.04 0.09 10.44 83.68 0.87 0.96 16 19 N -0.49 -4.07 11.30 -194.11 -2.19 -6.26 16 20 C 0.22 1.62 7.59 134.18 1.02 2.64 16 21 C -0.08 -0.27 6.24 22.42 0.14 -0.13 16 22 Br 0.01 0.02 33.72 -20.37 -0.69 -0.67 16 23 C -0.03 0.05 9.26 22.55 0.21 0.26 16 24 C -0.13 0.53 7.47 31.12 0.23 0.76 16 25 H 0.09 -0.50 8.14 -2.39 -0.02 -0.52 16 26 H 0.08 -0.40 8.14 -2.39 -0.02 -0.42 16 27 H 0.10 -0.43 8.14 -2.39 -0.02 -0.45 16 28 H 0.10 -0.47 8.10 -2.39 -0.02 -0.49 16 29 H 0.10 -0.84 8.14 -2.39 -0.02 -0.86 16 30 H 0.42 -4.37 6.73 -92.70 -0.62 -5.00 16 31 H 0.19 0.86 6.19 -2.91 -0.02 0.84 16 32 H 0.11 -0.87 7.96 -2.38 -0.02 -0.89 16 33 H 0.41 -3.77 8.74 -74.05 -0.65 -4.41 16 34 H -0.31 -1.30 7.11 99.48 0.71 -0.59 16 35 H -0.27 0.66 7.11 99.48 0.71 1.37 16 36 H 0.23 -1.61 6.90 -2.91 -0.02 -1.63 16 37 H 0.19 -1.81 6.44 -2.91 -0.02 -1.83 16 38 H 0.08 -0.28 8.14 -2.39 -0.02 -0.30 16 39 H 0.10 -0.25 8.10 -2.39 -0.02 -0.27 16 Total: 0.00 -23.81 363.47 -0.98 -24.80 By element: Atomic # 1 Polarization: -16.38 SS G_CDS: -0.11 Total: -16.49 kcal Atomic # 6 Polarization: 4.62 SS G_CDS: 6.11 Total: 10.73 kcal Atomic # 7 Polarization: -2.89 SS G_CDS: -5.50 Total: -8.39 kcal Atomic # 8 Polarization: -4.68 SS G_CDS: -1.68 Total: -6.36 kcal Atomic # 14 Polarization: -4.45 SS G_CDS: 2.14 Total: -2.31 kcal Atomic # 16 Polarization: -0.05 SS G_CDS: -1.25 Total: -1.31 kcal Atomic # 35 Polarization: 0.02 SS G_CDS: -0.69 Total: -0.67 kcal Total: -23.81 -0.98 -24.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_12525166_12335884.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.311 kcal (2) G-P(sol) polarization free energy of solvation -23.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.795 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds