Wall clock time and date at job start Thu Mar 4 2021 14:34:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81396 * 1 3 3 C 1.81407 * 103.00056 * 2 1 4 4 H 1.08994 * 112.84849 * 43.80291 * 3 2 1 5 5 C 1.53777 * 113.61325 * 174.99790 * 3 2 1 6 6 C 1.53784 * 87.08172 * 140.06669 * 5 3 2 7 7 H 1.09002 * 113.61454 * 219.93721 * 6 5 3 8 8 N 1.46499 * 113.61491 * 89.11442 * 6 5 3 9 9 C 1.34777 * 119.99665 * 155.28109 * 8 6 5 10 10 O 1.21573 * 120.00276 * 359.72080 * 9 8 6 11 11 C 1.47716 * 119.99706 * 179.72381 * 9 8 6 12 12 N 1.31802 * 126.51708 * 0.02562 * 11 9 8 13 13 N 1.28471 * 110.07361 * 179.97438 * 12 11 9 14 14 C 1.46505 * 124.88609 * 179.97438 * 13 12 11 15 15 C 1.35033 * 110.22604 * 0.02562 * 13 12 11 16 16 C 1.50708 * 126.37970 * 180.02562 * 15 13 12 17 17 O 1.42892 * 109.47102 * 30.00051 * 16 15 13 18 18 Si 1.86300 * 109.46628 * 149.99919 * 16 15 13 19 19 C 1.35359 * 107.23279 * 359.76021 * 15 13 12 20 20 C 1.53777 * 113.68914 * 272.53228 * 3 2 1 21 21 H 1.08993 * 109.47196 * 300.00296 * 1 2 3 22 22 H 1.09004 * 109.47050 * 60.00144 * 1 2 3 23 23 H 1.08999 * 109.47078 * 179.97438 * 1 2 3 24 24 H 1.08999 * 113.61756 * 25.52179 * 5 3 2 25 25 H 1.08999 * 113.69433 * 254.62504 * 5 3 2 26 26 H 0.97001 * 119.99790 * 334.99822 * 8 6 5 27 27 H 1.08994 * 109.46929 * 90.02302 * 14 13 12 28 28 H 1.08999 * 109.46904 * 210.02620 * 14 13 12 29 29 H 1.09004 * 109.46669 * 330.02327 * 14 13 12 30 30 H 1.08996 * 109.47078 * 269.99514 * 16 15 13 31 31 H 0.96704 * 114.00161 * 179.97438 * 17 16 15 32 32 H 1.48506 * 110.00009 * 178.68288 * 18 16 15 33 33 H 1.48500 * 110.00042 * 299.99592 * 18 16 15 34 34 H 1.07995 * 127.25363 * 180.24281 * 19 15 13 35 35 H 1.08999 * 113.61239 * 105.45820 * 20 3 2 36 36 H 1.08999 * 113.61926 * 334.56054 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7676 0.0000 4 1 1.6109 2.3430 0.6952 5 6 3.7283 2.0520 0.1229 6 6 3.5202 3.1753 -0.9066 7 1 4.3239 3.2506 -1.6392 8 7 3.1758 4.4660 -0.3053 9 6 3.4437 5.6100 -0.9657 10 8 3.9758 5.5710 -2.0581 11 6 3.0909 6.9112 -0.3621 12 7 2.5148 7.1026 0.8078 13 7 2.3544 8.3595 1.0200 14 6 1.7449 8.9354 2.2213 15 6 2.8275 9.0733 -0.0241 16 6 2.8231 10.5746 -0.1559 17 8 2.9173 11.1668 1.1411 18 14 4.2763 11.1112 -1.1907 19 6 3.3117 8.1893 -0.9276 20 6 2.3004 2.3836 -1.4068 21 1 -0.3633 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 4.3572 1.2388 -0.2394 25 1 4.0272 2.4119 1.1073 26 1 2.7512 4.4971 0.5663 27 1 2.5175 9.1208 2.9674 28 1 1.2542 9.8745 1.9652 29 1 1.0094 8.2394 2.6248 30 1 1.8979 10.8945 -0.6351 31 1 2.9204 12.1338 1.1327 32 1 4.2656 12.5872 -1.3547 33 1 5.5440 10.6809 -0.5480 34 1 3.7687 8.4124 -1.8803 35 1 1.4451 3.0112 -1.6569 36 1 2.5389 1.6610 -2.1873 There are 49 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 49 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_12525166_13259642.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 14:34:29 Heat of formation + Delta-G solvation = 47.522616 kcal Electronic energy + Delta-G solvation = -20021.611738 eV Core-core repulsion = 16829.780467 eV Total energy + Delta-G solvation = -3191.831271 eV No. of doubly occupied orbitals = 49 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 284.098 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.84011 -41.13629 -39.14217 -38.06157 -34.69420 -34.10646 -32.69870 -29.84583 -28.71619 -26.98681 -26.80581 -26.19883 -24.19348 -22.21167 -21.00990 -20.66703 -18.66890 -18.48510 -17.99098 -17.45649 -17.30693 -16.95296 -16.14469 -15.94837 -15.77541 -15.48240 -15.22395 -14.81432 -14.61085 -14.47854 -14.06061 -13.99598 -13.81815 -13.57485 -13.54340 -13.36486 -13.03225 -12.54542 -12.42475 -11.88244 -11.84048 -11.59926 -11.38993 -11.03734 -10.86059 -10.33723 -10.06386 -9.88799 -8.70186 -4.89221 0.40604 0.75284 0.79459 1.25769 1.51728 1.60287 1.64243 1.97222 2.01875 2.25038 2.98252 3.24180 3.32520 3.36044 3.52806 3.69491 3.91025 3.98022 4.28311 4.29288 4.31380 4.36564 4.38792 4.44589 4.48695 4.63992 4.68453 4.69848 4.72672 4.78126 4.85408 4.89233 4.98087 5.23891 5.45519 5.66319 6.31594 6.49735 6.79399 7.06290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 S -0.297 6.297 3 C -0.072 4.072 4 H 0.112 0.888 5 C -0.108 4.108 6 C 0.121 3.879 7 H 0.102 0.898 8 N -0.692 5.692 9 C 0.610 3.390 10 O -0.560 6.560 11 C -0.039 4.039 12 N -0.268 5.268 13 N -0.264 5.264 14 C 0.088 3.912 15 C 0.025 3.975 16 C -0.046 4.046 17 O -0.554 6.554 18 Si 0.774 3.226 19 C -0.191 4.191 20 C -0.132 4.132 21 H 0.084 0.916 22 H 0.082 0.918 23 H 0.105 0.895 24 H 0.108 0.892 25 H 0.093 0.907 26 H 0.414 0.586 27 H 0.088 0.912 28 H 0.118 0.882 29 H 0.102 0.898 30 H 0.118 0.882 31 H 0.406 0.594 32 H -0.266 1.266 33 H -0.312 1.312 34 H 0.184 0.816 35 H 0.073 0.927 36 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.633 4.844 1.873 6.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.282 4.282 2 S -0.069 6.069 3 C -0.200 4.200 4 H 0.130 0.870 5 C -0.147 4.147 6 C 0.014 3.986 7 H 0.120 0.880 8 N -0.343 5.343 9 C 0.395 3.605 10 O -0.436 6.436 11 C -0.197 4.197 12 N -0.106 5.106 13 N -0.053 5.053 14 C -0.051 4.051 15 C -0.100 4.100 16 C -0.156 4.156 17 O -0.365 6.365 18 Si 0.677 3.323 19 C -0.218 4.218 20 C -0.173 4.173 21 H 0.103 0.897 22 H 0.101 0.899 23 H 0.124 0.876 24 H 0.126 0.874 25 H 0.111 0.889 26 H 0.251 0.749 27 H 0.106 0.894 28 H 0.136 0.864 29 H 0.121 0.879 30 H 0.135 0.865 31 H 0.259 0.741 32 H -0.191 1.191 33 H -0.240 1.240 34 H 0.201 0.799 35 H 0.092 0.908 36 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -3.362 3.245 2.316 5.215 hybrid contribution -0.984 1.996 0.807 2.367 sum -4.346 5.241 3.124 7.491 Atomic orbital electron populations 1.23393 0.92052 1.07154 1.05619 1.87071 1.10038 1.12089 1.97724 1.24776 1.01071 0.93013 1.01184 0.86966 1.23138 0.93530 0.97410 1.00618 1.21838 0.98462 0.81523 0.96769 0.87971 1.45439 1.61865 1.04338 1.22619 1.16967 0.77321 0.82397 0.83790 1.90793 1.44348 1.87233 1.21254 1.21758 1.08475 0.95134 0.94358 1.73438 1.18757 1.00523 1.17863 1.45675 1.41034 1.02235 1.16404 1.22479 0.99423 1.00439 0.82769 1.21194 1.03627 0.94860 0.90309 1.24421 1.12534 0.87116 0.91568 1.86460 1.96527 1.27436 1.26109 0.93401 0.73028 0.79270 0.86599 1.21649 1.07352 0.89785 1.03050 1.23723 0.98707 0.98968 0.95900 0.89728 0.89860 0.87587 0.87364 0.88873 0.74894 0.89351 0.86401 0.87919 0.86458 0.74118 1.19108 1.23962 0.79857 0.90797 0.87593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.20 10.76 113.37 1.22 1.42 16 2 S -0.30 -0.81 22.18 -56.49 -1.25 -2.06 16 3 C -0.07 0.06 4.15 31.12 0.13 0.19 16 4 H 0.11 -0.28 8.14 -2.39 -0.02 -0.30 16 5 C -0.11 0.15 7.42 31.12 0.23 0.38 16 6 C 0.12 0.17 4.32 45.52 0.20 0.37 16 7 H 0.10 0.45 7.47 -2.39 -0.02 0.43 16 8 N -0.69 -2.02 5.26 -443.01 -2.33 -4.35 16 9 C 0.61 5.36 7.83 86.75 0.68 6.04 16 10 O -0.56 -8.22 16.53 -3.95 -0.07 -8.29 16 11 C -0.04 -0.30 7.13 42.46 0.30 0.00 16 12 N -0.27 -1.56 11.67 -48.18 -0.56 -2.12 16 13 N -0.26 -0.72 3.70 -355.92 -1.32 -2.04 16 14 C 0.09 -0.38 10.12 127.77 1.29 0.92 16 15 C 0.03 0.05 6.22 41.40 0.26 0.30 16 16 C -0.05 0.23 2.86 71.24 0.20 0.44 16 17 O -0.55 3.16 10.38 -148.98 -1.55 1.62 16 18 Si 0.77 -2.93 31.22 68.60 2.14 -0.79 16 19 C -0.19 -0.87 9.35 22.41 0.21 -0.66 16 20 C -0.13 -0.02 7.47 31.12 0.23 0.21 16 21 H 0.08 -0.28 8.14 -2.39 -0.02 -0.30 16 22 H 0.08 -0.23 8.14 -2.39 -0.02 -0.24 16 23 H 0.11 -0.29 8.14 -2.39 -0.02 -0.31 16 24 H 0.11 -0.14 8.10 -2.39 -0.02 -0.15 16 25 H 0.09 -0.26 8.14 -2.39 -0.02 -0.28 16 26 H 0.41 -0.05 8.43 -92.71 -0.78 -0.83 16 27 H 0.09 -0.39 8.14 -2.39 -0.02 -0.41 16 28 H 0.12 -0.88 6.77 -2.39 -0.02 -0.89 16 29 H 0.10 -0.68 8.14 -2.38 -0.02 -0.70 16 30 H 0.12 -1.21 7.96 -2.39 -0.02 -1.23 16 31 H 0.41 -5.60 8.74 -74.05 -0.65 -6.25 16 32 H -0.27 0.47 7.11 99.48 0.71 1.18 16 33 H -0.31 -2.04 7.11 99.48 0.71 -1.33 16 34 H 0.18 0.14 7.01 -2.91 -0.02 0.12 16 35 H 0.07 0.07 8.14 -2.39 -0.02 0.05 16 36 H 0.11 0.04 8.10 -2.39 -0.02 0.02 16 Total: 0.00 -19.59 320.49 -0.26 -19.85 By element: Atomic # 1 Polarization: -11.14 SS G_CDS: -0.28 Total: -11.43 kcal Atomic # 6 Polarization: 4.65 SS G_CDS: 4.95 Total: 9.61 kcal Atomic # 7 Polarization: -4.30 SS G_CDS: -4.21 Total: -8.51 kcal Atomic # 8 Polarization: -5.06 SS G_CDS: -1.61 Total: -6.67 kcal Atomic # 14 Polarization: -2.93 SS G_CDS: 2.14 Total: -0.79 kcal Atomic # 16 Polarization: -0.81 SS G_CDS: -1.25 Total: -2.06 kcal Total: -19.59 -0.26 -19.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_12525166_13259642.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.372 kcal (2) G-P(sol) polarization free energy of solvation -19.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.850 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds