Wall clock time and date at job start Thu Mar 4 2021 13:11:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34226 * 117.00195 * 2 1 4 4 O 1.20830 * 119.99678 * 359.97438 * 3 2 1 5 5 C 1.50704 * 120.00171 * 180.02562 * 3 2 1 6 6 N 1.46500 * 112.84362 * 324.05918 * 5 3 2 7 7 C 1.34778 * 120.00195 * 293.64042 * 6 5 3 8 8 O 1.21570 * 120.00044 * 354.99312 * 7 6 5 9 9 C 1.47713 * 119.99914 * 174.99134 * 7 6 5 10 10 N 1.31806 * 126.51647 * 0.02562 * 9 7 6 11 11 N 1.28469 * 110.07186 * 179.97438 * 10 9 7 12 12 C 1.46502 * 124.88444 * 179.97438 * 11 10 9 13 13 C 1.35036 * 110.23098 * 0.23053 * 11 10 9 14 14 C 1.50695 * 126.38529 * 179.72933 * 13 11 10 15 15 O 1.42901 * 109.47540 * 330.00563 * 14 13 11 16 16 Si 1.86297 * 109.47234 * 209.99755 * 14 13 11 17 17 C 1.35369 * 107.22545 * 359.62993 * 13 11 10 18 18 C 1.53783 * 113.61360 * 192.86654 * 5 3 2 19 19 C 1.53779 * 87.07780 * 270.79741 * 18 5 3 20 20 H 1.09000 * 113.61815 * 89.20052 * 19 18 5 21 21 O 1.42900 * 113.61527 * 220.02025 * 19 18 5 22 22 C 1.53775 * 113.69110 * 95.32730 * 5 3 2 23 23 H 1.09000 * 109.46684 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.46964 * 300.00084 * 1 2 3 25 25 H 1.08999 * 109.46622 * 60.00092 * 1 2 3 26 26 H 0.96999 * 119.99982 * 113.64971 * 6 5 3 27 27 H 1.08997 * 109.47225 * 90.03102 * 12 11 10 28 28 H 1.08997 * 109.47215 * 330.02608 * 12 11 10 29 29 H 1.09006 * 109.47155 * 210.02932 * 12 11 10 30 30 H 1.09006 * 109.46793 * 90.00042 * 14 13 11 31 31 H 0.96697 * 113.99259 * 299.99325 * 15 14 13 32 32 H 1.48505 * 110.00018 * 180.02562 * 16 14 13 33 33 H 1.48493 * 110.00473 * 301.32280 * 16 14 13 34 34 H 1.07998 * 127.24077 * 180.09782 * 17 13 11 35 35 H 1.09002 * 113.61136 * 25.34289 * 18 5 3 36 36 H 1.09001 * 113.61039 * 156.16316 * 18 5 3 37 37 H 0.96694 * 114.00337 * 180.02562 * 21 19 18 38 38 H 1.09002 * 113.61258 * 203.67715 * 22 5 3 39 39 H 1.08995 * 113.61540 * 334.57781 * 22 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 -0.0006 6 7 4.1919 0.2128 0.7914 7 6 4.0242 0.1814 2.1283 8 8 3.4310 1.0830 2.6879 9 6 4.5610 -0.9487 2.9136 10 7 5.2209 -1.9878 2.4425 11 7 5.5405 -2.7794 3.4025 12 6 6.2798 -4.0341 3.2430 13 6 5.0919 -2.2915 4.5790 14 6 5.2602 -2.9296 5.9338 15 8 5.3103 -4.3503 5.7884 16 14 3.8200 -2.4670 7.0213 17 6 4.4650 -1.1212 4.3147 18 6 4.1098 2.6788 0.3133 19 6 4.0437 2.9563 -1.1978 20 1 3.0861 3.3607 -1.5260 21 8 5.1590 3.7002 -1.6926 22 6 4.1761 1.4380 -1.4029 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3632 0.5138 -0.8900 26 1 4.7269 -0.4676 0.3536 27 1 7.3489 -3.8390 3.3268 28 1 6.0640 -4.4611 2.2637 29 1 5.9766 -4.7358 4.0201 30 1 6.1864 -2.5780 6.3885 31 1 4.5170 -4.7329 5.3894 32 1 3.9743 -3.0896 8.3606 33 1 3.7378 -0.9903 7.1546 34 1 3.9880 -0.4607 5.0236 35 1 3.4249 3.2909 0.9000 36 1 5.1235 2.6751 0.7139 37 1 5.1229 3.8782 -2.6424 38 1 5.2084 1.0952 -1.4727 39 1 3.5448 1.0485 -2.2014 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_12808048_13259642.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 13:11:31 Heat of formation + Delta-G solvation = -76.282881 kcal Electronic energy + Delta-G solvation = -26839.943558 eV Core-core repulsion = 22753.082474 eV Total energy + Delta-G solvation = -4086.861084 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 312.125 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.90366 -42.59090 -40.60116 -39.62692 -38.11327 -37.63740 -36.55323 -34.61955 -33.99692 -32.57392 -29.38811 -28.62354 -27.21129 -26.99319 -26.21358 -24.41482 -23.02450 -22.26196 -21.07509 -20.79614 -19.51404 -19.10087 -18.34165 -17.91761 -17.79169 -17.54507 -17.39386 -17.10694 -16.86675 -16.06039 -15.78055 -15.77193 -15.58207 -15.48029 -15.08377 -14.66910 -14.43806 -14.03535 -13.90248 -13.68994 -13.64918 -13.44404 -13.42026 -13.18274 -12.66822 -12.59368 -12.35738 -12.00352 -11.96699 -11.89788 -11.86728 -11.36988 -11.07430 -10.87259 -10.55321 -10.17354 -9.99932 -4.98668 0.33078 0.74085 0.78557 1.16273 1.42384 1.50232 1.67697 1.83336 1.98655 2.17608 2.94217 3.08469 3.09659 3.24919 3.29529 3.35816 3.43356 3.60549 3.95294 4.07793 4.18490 4.22649 4.29843 4.33388 4.39936 4.45773 4.49825 4.53354 4.56963 4.60735 4.65367 4.74203 4.81127 4.82342 5.06726 5.14872 5.19475 5.64222 6.17287 6.44899 6.52570 6.74404 6.81743 6.93500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.354 6.354 3 C 0.477 3.523 4 O -0.518 6.518 5 C 0.150 3.850 6 N -0.684 5.684 7 C 0.608 3.392 8 O -0.559 6.559 9 C -0.037 4.037 10 N -0.254 5.254 11 N -0.254 5.254 12 C 0.061 3.939 13 C -0.005 4.005 14 C -0.032 4.032 15 O -0.540 6.540 16 Si 0.787 3.213 17 C -0.197 4.197 18 C -0.114 4.114 19 C 0.087 3.913 20 H 0.094 0.906 21 O -0.566 6.566 22 C -0.133 4.133 23 H 0.134 0.866 24 H 0.054 0.946 25 H 0.071 0.929 26 H 0.426 0.574 27 H 0.090 0.910 28 H 0.107 0.893 29 H 0.139 0.861 30 H 0.129 0.871 31 H 0.400 0.600 32 H -0.279 1.279 33 H -0.294 1.294 34 H 0.159 0.841 35 H 0.070 0.930 36 H 0.105 0.895 37 H 0.402 0.598 38 H 0.136 0.864 39 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.960 -9.015 -3.500 9.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.269 6.269 3 C 0.319 3.681 4 O -0.406 6.406 5 C 0.062 3.938 6 N -0.338 5.338 7 C 0.394 3.606 8 O -0.435 6.435 9 C -0.195 4.195 10 N -0.093 5.093 11 N -0.044 5.044 12 C -0.077 4.077 13 C -0.131 4.131 14 C -0.144 4.144 15 O -0.348 6.348 16 Si 0.691 3.309 17 C -0.225 4.225 18 C -0.153 4.153 19 C 0.028 3.972 20 H 0.112 0.888 21 O -0.374 6.374 22 C -0.171 4.171 23 H 0.152 0.848 24 H 0.073 0.927 25 H 0.090 0.910 26 H 0.265 0.735 27 H 0.108 0.892 28 H 0.126 0.874 29 H 0.157 0.843 30 H 0.146 0.854 31 H 0.252 0.748 32 H -0.206 1.206 33 H -0.221 1.221 34 H 0.176 0.824 35 H 0.088 0.912 36 H 0.123 0.877 37 H 0.253 0.747 38 H 0.154 0.846 39 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 1.252 -8.256 -2.519 8.722 hybrid contribution -0.010 0.645 -0.025 0.645 sum 1.242 -7.611 -2.544 8.121 Atomic orbital electron populations 1.23609 0.74430 1.05954 1.02617 1.86503 1.25159 1.32138 1.83150 1.23492 0.91314 0.81749 0.71595 1.90675 1.66829 1.37215 1.45865 1.21111 0.85106 0.90339 0.97292 1.45460 1.52530 1.30210 1.05624 1.17163 0.77966 0.83621 0.81812 1.90830 1.43383 1.37992 1.71275 1.21502 1.07475 0.96660 0.93819 1.73472 1.15298 1.02135 1.18350 1.45760 1.37691 1.18284 1.02643 1.23002 0.96725 0.80209 1.07722 1.22069 1.02843 0.96918 0.91228 1.24782 1.12033 0.83873 0.93689 1.86452 1.46327 1.17010 1.85007 0.93210 0.82502 0.78560 0.76620 1.21601 1.06905 0.99016 0.94961 1.23323 1.02426 0.92218 0.97294 1.23080 0.90506 0.90140 0.93517 0.88789 1.86493 1.44261 1.75837 1.30855 1.24031 1.04294 0.97404 0.91354 0.84837 0.92702 0.91017 0.73452 0.89171 0.87412 0.84349 0.85403 0.74830 1.20554 1.22088 0.82381 0.91170 0.87701 0.74709 0.84645 0.87397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.04 10.56 113.37 1.20 1.23 16 2 O -0.35 -2.33 10.42 -51.38 -0.54 -2.87 16 3 C 0.48 4.39 6.44 71.24 0.46 4.85 16 4 O -0.52 -7.35 15.12 21.95 0.33 -7.02 16 5 C 0.15 0.71 1.11 3.38 0.00 0.71 16 6 N -0.68 -2.80 5.13 -426.88 -2.19 -4.99 16 7 C 0.61 6.16 7.48 86.75 0.65 6.81 16 8 O -0.56 -9.74 15.97 -3.94 -0.06 -9.80 16 9 C -0.04 -0.27 7.13 42.46 0.30 0.03 16 10 N -0.25 -0.88 11.68 -48.18 -0.56 -1.44 16 11 N -0.25 0.23 3.70 -355.92 -1.32 -1.09 16 12 C 0.06 -0.53 11.01 127.77 1.41 0.88 16 13 C -0.01 0.00 6.18 41.40 0.26 0.26 16 14 C -0.03 0.16 2.99 71.23 0.21 0.37 16 15 O -0.54 4.54 10.02 -148.98 -1.49 3.05 16 16 Si 0.79 -3.00 31.37 68.60 2.15 -0.85 16 17 C -0.20 -1.05 9.35 22.41 0.21 -0.84 16 18 C -0.11 -0.84 6.15 31.12 0.19 -0.65 16 19 C 0.09 0.15 4.82 31.12 0.15 0.30 16 20 H 0.09 0.20 7.63 -2.39 -0.02 0.18 16 21 O -0.57 -0.60 13.67 -148.98 -2.04 -2.64 16 22 C -0.13 0.36 7.21 31.12 0.22 0.59 16 23 H 0.13 -0.67 8.14 -2.39 -0.02 -0.69 16 24 H 0.05 0.21 8.13 -2.39 -0.02 0.19 16 25 H 0.07 0.01 8.13 -2.39 -0.02 -0.01 16 26 H 0.43 -0.38 8.44 -92.71 -0.78 -1.16 16 27 H 0.09 -0.81 8.14 -2.39 -0.02 -0.83 16 28 H 0.11 -1.16 8.14 -2.39 -0.02 -1.18 16 29 H 0.14 -1.69 5.00 -2.38 -0.01 -1.70 16 30 H 0.13 -0.62 7.96 -2.38 -0.02 -0.64 16 31 H 0.40 -6.37 8.39 -74.06 -0.62 -6.99 16 32 H -0.28 -0.43 7.11 99.48 0.71 0.28 16 33 H -0.29 -1.09 6.83 99.48 0.68 -0.41 16 34 H 0.16 0.98 6.84 -2.91 -0.02 0.96 16 35 H 0.07 0.89 7.64 -2.39 -0.02 0.87 16 36 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.40 -3.33 9.12 -74.06 -0.68 -4.00 16 38 H 0.14 -0.83 8.14 -2.39 -0.02 -0.85 16 39 H 0.11 -0.66 8.10 -2.39 -0.02 -0.68 16 Total: 0.00 -27.60 337.52 -1.38 -28.98 By element: Atomic # 1 Polarization: -14.95 SS G_CDS: -0.94 Total: -15.89 kcal Atomic # 6 Polarization: 9.28 SS G_CDS: 5.26 Total: 14.54 kcal Atomic # 7 Polarization: -3.45 SS G_CDS: -4.07 Total: -7.52 kcal Atomic # 8 Polarization: -15.48 SS G_CDS: -3.80 Total: -19.27 kcal Atomic # 14 Polarization: -3.00 SS G_CDS: 2.15 Total: -0.85 kcal Total: -27.60 -1.38 -28.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_12808048_13259642.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.299 kcal (2) G-P(sol) polarization free energy of solvation -27.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds