Wall clock time and date at job start Thu Mar 4 2021 16:09:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 N 1.28466 * 124.88496 * 2 1 4 4 C 1.31814 * 110.07293 * 180.02562 * 3 2 1 5 5 C 1.47710 * 126.51705 * 179.97438 * 4 3 2 6 6 O 1.21572 * 119.99756 * 180.02562 * 5 4 3 7 7 N 1.34778 * 120.00221 * 0.02932 * 5 4 3 8 8 C 1.46498 * 120.00186 * 180.02562 * 7 5 4 9 9 H 1.09007 * 112.84789 * 336.19028 * 8 7 5 10 10 C 1.53778 * 113.61736 * 107.49948 * 8 7 5 11 11 C 1.53784 * 87.08081 * 89.11728 * 10 8 7 12 12 H 1.09004 * 113.61451 * 270.88641 * 11 10 8 13 13 C 1.50692 * 113.61665 * 139.98095 * 11 10 8 14 14 O 1.20830 * 120.00456 * 262.50575 * 13 11 10 15 15 O 1.34235 * 120.00215 * 82.49987 * 13 11 10 16 16 C 1.45193 * 117.00254 * 179.97438 * 15 13 11 17 17 C 1.52999 * 109.46953 * 60.00285 * 16 15 13 18 18 C 1.53005 * 109.47272 * 180.02562 * 16 15 13 19 19 C 1.52996 * 109.47467 * 300.00272 * 16 15 13 20 20 C 1.53778 * 113.61412 * 205.00214 * 8 7 5 21 21 C 1.41500 * 106.96210 * 0.23092 * 4 3 2 22 22 C 1.35038 * 124.88601 * 180.02562 * 2 1 3 23 23 C 1.50697 * 126.38099 * 0.03085 * 22 2 1 24 24 O 1.42896 * 109.47430 * 329.99822 * 23 22 2 25 25 Si 1.86305 * 109.47005 * 210.00267 * 23 22 2 26 26 H 1.08999 * 109.47554 * 89.97025 * 1 2 3 27 27 H 1.09002 * 109.47118 * 209.97078 * 1 2 3 28 28 H 1.09004 * 109.47311 * 329.97037 * 1 2 3 29 29 H 0.97004 * 119.99709 * 359.97438 * 7 5 4 30 30 H 1.08993 * 113.61229 * 334.57051 * 10 8 7 31 31 H 1.09000 * 113.61263 * 203.66701 * 10 8 7 32 32 H 1.09004 * 109.47136 * 59.99868 * 17 16 15 33 33 H 1.09003 * 109.47293 * 179.97438 * 17 16 15 34 34 H 1.09000 * 109.47525 * 300.00088 * 17 16 15 35 35 H 1.09002 * 109.46649 * 59.99804 * 18 16 15 36 36 H 1.08991 * 109.47117 * 180.02562 * 18 16 15 37 37 H 1.09004 * 109.47146 * 300.00334 * 18 16 15 38 38 H 1.09000 * 109.47188 * 60.00066 * 19 16 15 39 39 H 1.08999 * 109.47206 * 179.97438 * 19 16 15 40 40 H 1.08994 * 109.47023 * 300.00134 * 19 16 15 41 41 H 1.08998 * 113.61879 * 156.33410 * 20 8 7 42 42 H 1.08999 * 113.61887 * 25.42517 * 20 8 7 43 43 H 1.07996 * 127.24531 * 179.74859 * 21 4 3 44 44 H 1.09003 * 109.47576 * 90.00170 * 23 22 2 45 45 H 0.96705 * 114.00392 * 180.02562 * 24 23 22 46 46 H 1.48503 * 109.99453 * 298.68076 * 25 23 22 47 47 H 1.48497 * 110.00007 * 59.99456 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.1997 1.0538 0.0000 4 6 3.4740 0.7168 -0.0006 5 6 4.6273 1.6398 -0.0013 6 8 5.7597 1.1976 -0.0022 7 7 4.4241 2.9722 -0.0008 8 6 5.5679 3.8876 -0.0021 9 1 6.4731 3.4344 0.4022 10 6 5.7825 4.6035 -1.3460 11 6 4.8383 5.6991 -0.8235 12 1 3.7878 5.5133 -1.0471 13 6 5.2764 7.0955 -1.1829 14 8 5.8922 7.7601 -0.3834 15 8 4.9828 7.6010 -2.3912 16 6 5.4359 8.9523 -2.6682 17 6 6.9607 9.0118 -2.5572 18 6 5.0110 9.3529 -4.0825 19 6 4.8129 9.9166 -1.6568 20 6 5.2517 5.2694 0.5940 21 6 3.5271 -0.6972 -0.0064 22 6 2.2373 -1.1077 -0.0005 23 6 1.7533 -2.5348 -0.0018 24 8 0.4951 -2.6118 0.6712 25 14 2.9941 -3.6121 0.8763 26 1 -0.3634 0.0005 -1.0276 27 1 -0.3633 -0.8903 0.5134 28 1 -0.3634 0.8897 0.5143 29 1 3.5205 3.3250 -0.0004 30 1 5.3853 4.0560 -2.2007 31 1 6.8059 4.9459 -1.4998 32 1 7.4045 8.3249 -3.2778 33 1 7.3009 10.0262 -2.7656 34 1 7.2631 8.7267 -1.5496 35 1 3.9246 9.3105 -4.1611 36 1 5.3515 10.3671 -4.2906 37 1 5.4545 8.6660 -4.8034 38 1 5.1152 9.6315 -0.6492 39 1 5.1534 10.9310 -1.8646 40 1 3.7267 9.8742 -1.7359 41 1 6.1298 5.7939 0.9706 42 1 4.4260 5.2595 1.3055 43 1 4.4107 -1.3181 -0.0122 44 1 1.6371 -2.8783 -1.0298 45 1 0.1231 -3.5036 0.7089 46 1 4.2983 -3.5657 0.1677 47 1 3.1616 -3.1542 2.2789 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_12862686_13259642.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 16:09:08 Heat of formation + Delta-G solvation = -41.442512 kcal Electronic energy + Delta-G solvation = -29435.429476 eV Core-core repulsion = 25202.148519 eV Total energy + Delta-G solvation = -4233.280957 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 338.172 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -43.96509 -42.25937 -41.04662 -39.41451 -37.92792 -37.78240 -35.15154 -34.75517 -34.20344 -32.78503 -28.96397 -28.44824 -28.36838 -27.83222 -26.91507 -26.69228 -24.71158 -23.23008 -22.36102 -21.17035 -21.02108 -20.26941 -18.76701 -18.49632 -18.34535 -17.74077 -17.50872 -17.42759 -17.16407 -17.00219 -16.20426 -15.94050 -15.80459 -15.60626 -15.39825 -15.19738 -15.06837 -14.77224 -14.57813 -14.02393 -13.87666 -13.63523 -13.57412 -13.47602 -13.44527 -13.16073 -13.14102 -12.99087 -12.93582 -12.92416 -12.53510 -12.17442 -12.15472 -12.05618 -11.93202 -11.71965 -11.51397 -11.45432 -10.99016 -10.90282 -10.45017 -10.16765 -9.95498 -5.01249 0.28371 0.65779 1.09039 1.18388 1.52260 1.62881 1.68166 1.90046 2.05688 2.11699 2.98692 3.11419 3.16294 3.26301 3.48448 3.56368 3.61166 3.68626 3.73095 3.88824 3.92552 3.97917 4.20990 4.30894 4.37075 4.40774 4.43385 4.47511 4.50991 4.53452 4.57012 4.62818 4.69314 4.70119 4.76251 4.81001 4.81470 4.84784 4.87584 4.91136 5.05788 5.06323 5.18427 5.22225 5.35224 5.50351 5.57370 6.21660 6.66867 6.74247 6.83709 6.94786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.256 5.256 3 N -0.259 5.259 4 C -0.037 4.037 5 C 0.609 3.391 6 O -0.566 6.566 7 N -0.687 5.687 8 C 0.119 3.881 9 H 0.102 0.898 10 C -0.125 4.125 11 C -0.108 4.108 12 H 0.142 0.858 13 C 0.473 3.527 14 O -0.522 6.522 15 O -0.356 6.356 16 C 0.106 3.894 17 C -0.181 4.181 18 C -0.139 4.139 19 C -0.180 4.180 20 C -0.114 4.114 21 C -0.216 4.216 22 C 0.028 3.972 23 C -0.043 4.043 24 O -0.557 6.557 25 Si 0.811 3.189 26 H 0.100 0.900 27 H 0.136 0.864 28 H 0.100 0.900 29 H 0.418 0.582 30 H 0.087 0.913 31 H 0.099 0.901 32 H 0.063 0.937 33 H 0.086 0.914 34 H 0.063 0.937 35 H 0.069 0.931 36 H 0.095 0.905 37 H 0.067 0.933 38 H 0.063 0.937 39 H 0.086 0.914 40 H 0.064 0.936 41 H 0.107 0.893 42 H 0.097 0.903 43 H 0.155 0.845 44 H 0.119 0.881 45 H 0.416 0.584 46 H -0.294 1.294 47 H -0.311 1.311 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.566 -4.538 -2.835 10.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.045 5.045 3 N -0.097 5.097 4 C -0.195 4.195 5 C 0.395 3.605 6 O -0.443 6.443 7 N -0.338 5.338 8 C 0.014 3.986 9 H 0.120 0.880 10 C -0.164 4.164 11 C -0.127 4.127 12 H 0.160 0.840 13 C 0.317 3.683 14 O -0.411 6.411 15 O -0.273 6.273 16 C 0.070 3.930 17 C -0.238 4.238 18 C -0.196 4.196 19 C -0.237 4.237 20 C -0.151 4.151 21 C -0.244 4.244 22 C -0.097 4.097 23 C -0.153 4.153 24 O -0.370 6.370 25 Si 0.717 3.283 26 H 0.118 0.882 27 H 0.154 0.846 28 H 0.119 0.881 29 H 0.255 0.745 30 H 0.106 0.894 31 H 0.118 0.882 32 H 0.082 0.918 33 H 0.105 0.895 34 H 0.082 0.918 35 H 0.088 0.912 36 H 0.113 0.887 37 H 0.086 0.914 38 H 0.082 0.918 39 H 0.105 0.895 40 H 0.083 0.917 41 H 0.126 0.874 42 H 0.116 0.884 43 H 0.173 0.827 44 H 0.136 0.864 45 H 0.270 0.730 46 H -0.221 1.221 47 H -0.239 1.239 Dipole moment (debyes) X Y Z Total from point charges -7.598 -3.080 -2.156 8.478 hybrid contribution 0.416 0.410 -0.149 0.603 sum -7.182 -2.670 -2.305 8.002 Atomic orbital electron populations 1.22927 0.70003 1.07874 1.06182 1.45805 1.09382 1.01512 1.47842 1.73445 1.02308 1.14800 1.19164 1.21702 0.91208 0.93818 1.12742 1.16958 0.86193 0.82096 0.75261 1.90792 1.23919 1.77774 1.51765 1.45388 1.10614 1.04200 1.73581 1.21830 0.90132 0.89389 0.97283 0.88021 1.23339 1.00131 0.94615 0.98316 1.22741 1.03448 0.87236 0.99253 0.84016 1.23760 0.75784 0.89413 0.79335 1.90588 1.38431 1.61064 1.51021 1.86569 1.72580 1.33081 1.35084 1.22449 0.94720 0.78280 0.97501 1.22464 0.93999 1.04080 1.03239 1.21881 1.02807 1.02888 0.92001 1.22456 1.01299 1.00118 0.99842 1.23272 1.04208 0.93046 0.94621 1.21525 0.97095 0.94230 1.11594 1.21431 0.90287 0.91292 1.06705 1.24382 0.95168 0.91693 1.04046 1.86207 1.33921 1.37789 1.79065 0.94565 0.75369 0.83668 0.74711 0.88169 0.84588 0.88135 0.74472 0.89397 0.88239 0.91828 0.89544 0.91769 0.91205 0.88668 0.91351 0.91802 0.89544 0.91690 0.87438 0.88419 0.82704 0.86398 0.72965 1.22132 1.23915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 -0.33 11.00 127.77 1.41 1.07 16 2 N -0.26 -0.92 3.70 -355.94 -1.32 -2.23 16 3 N -0.26 -1.83 11.67 -48.17 -0.56 -2.40 16 4 C -0.04 -0.38 7.13 42.46 0.30 -0.08 16 5 C 0.61 6.82 7.83 86.75 0.68 7.50 16 6 O -0.57 -10.18 16.52 -3.94 -0.07 -10.24 16 7 N -0.69 -2.71 5.26 -443.03 -2.33 -5.04 16 8 C 0.12 0.29 4.32 45.52 0.20 0.49 16 9 H 0.10 0.59 7.46 -2.38 -0.02 0.57 16 10 C -0.13 -0.10 7.43 31.12 0.23 0.13 16 11 C -0.11 0.01 4.14 -11.01 -0.05 -0.04 16 12 H 0.14 -0.54 8.14 -2.39 -0.02 -0.56 16 13 C 0.47 2.45 6.79 71.23 0.48 2.94 16 14 O -0.52 -4.97 11.40 21.95 0.25 -4.72 16 15 O -0.36 -1.88 9.89 -51.47 -0.51 -2.39 16 16 C 0.11 0.32 1.13 -10.79 -0.01 0.31 16 17 C -0.18 -0.57 8.37 71.98 0.60 0.03 16 18 C -0.14 0.18 8.85 71.98 0.64 0.81 16 19 C -0.18 -0.51 8.37 71.98 0.60 0.09 16 20 C -0.11 0.02 7.15 31.12 0.22 0.24 16 21 C -0.22 -2.06 9.35 22.41 0.21 -1.85 16 22 C 0.03 0.11 6.21 41.40 0.26 0.37 16 23 C -0.04 0.23 2.98 71.24 0.21 0.44 16 24 O -0.56 5.12 9.76 -148.98 -1.45 3.67 16 25 Si 0.81 -3.15 31.32 68.60 2.15 -1.00 16 26 H 0.10 -0.80 8.14 -2.39 -0.02 -0.82 16 27 H 0.14 -0.94 5.19 -2.39 -0.01 -0.96 16 28 H 0.10 -0.63 8.14 -2.39 -0.02 -0.65 16 29 H 0.42 0.00 8.43 -92.71 -0.78 -0.78 16 30 H 0.09 0.09 8.14 -2.39 -0.02 0.07 16 31 H 0.10 0.10 8.09 -2.39 -0.02 0.08 16 32 H 0.06 0.17 8.14 -2.39 -0.02 0.15 16 33 H 0.09 0.01 8.14 -2.39 -0.02 -0.01 16 34 H 0.06 0.48 5.89 -2.39 -0.01 0.46 16 35 H 0.07 -0.11 8.14 -2.39 -0.02 -0.13 16 36 H 0.09 -0.42 8.14 -2.39 -0.02 -0.44 16 37 H 0.07 -0.08 8.14 -2.39 -0.02 -0.10 16 38 H 0.06 0.46 5.89 -2.39 -0.01 0.45 16 39 H 0.09 -0.02 8.14 -2.39 -0.02 -0.04 16 40 H 0.06 0.13 8.14 -2.39 -0.02 0.11 16 41 H 0.11 0.19 7.43 -2.39 -0.02 0.17 16 42 H 0.10 -0.23 8.14 -2.39 -0.02 -0.25 16 43 H 0.16 1.57 6.92 -2.91 -0.02 1.55 16 44 H 0.12 -1.24 7.96 -2.39 -0.02 -1.26 16 45 H 0.42 -8.24 8.74 -74.05 -0.65 -8.89 16 46 H -0.29 -0.99 6.94 99.48 0.69 -0.29 16 47 H -0.31 -1.92 7.11 99.48 0.71 -1.21 16 Total: 0.00 -26.41 384.34 1.75 -24.66 By element: Atomic # 1 Polarization: -12.37 SS G_CDS: -0.40 Total: -12.77 kcal Atomic # 6 Polarization: 6.48 SS G_CDS: 5.99 Total: 12.46 kcal Atomic # 7 Polarization: -5.46 SS G_CDS: -4.21 Total: -9.66 kcal Atomic # 8 Polarization: -11.91 SS G_CDS: -1.78 Total: -13.69 kcal Atomic # 14 Polarization: -3.15 SS G_CDS: 2.15 Total: -1.00 kcal Total: -26.41 1.75 -24.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_12862686_13259642.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.785 kcal (2) G-P(sol) polarization free energy of solvation -26.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds