Wall clock time and date at job start Thu Mar 4 2021 14:03:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 N 1.28461 * 124.88786 * 2 1 4 4 C 1.31813 * 110.07483 * 180.02562 * 3 2 1 5 5 C 1.47709 * 126.51648 * 180.02562 * 4 3 2 6 6 O 1.21571 * 119.99826 * 179.97438 * 5 4 3 7 7 N 1.34777 * 120.00118 * 359.97389 * 5 4 3 8 8 C 1.46504 * 119.99909 * 179.97438 * 7 5 4 9 9 H 1.08997 * 112.84647 * 23.80583 * 8 7 5 10 10 C 1.53781 * 113.61272 * 155.00047 * 8 7 5 11 11 C 1.53780 * 87.07862 * 89.11937 * 10 8 7 12 12 H 1.09008 * 113.61503 * 270.79660 * 11 10 8 13 13 S 1.81396 * 113.61518 * 139.98356 * 11 10 8 14 14 C 1.81404 * 101.92212 * 184.99965 * 13 11 10 15 15 O 1.42107 * 108.57464 * 299.48497 * 13 11 10 16 16 O 1.42099 * 108.58193 * 70.50892 * 13 11 10 17 17 C 1.53776 * 113.61381 * 252.50077 * 8 7 5 18 18 C 1.41499 * 106.96132 * 359.77198 * 4 3 2 19 19 C 1.35033 * 124.88130 * 180.02562 * 2 1 3 20 20 C 1.50707 * 126.38941 * 359.95678 * 19 2 1 21 21 O 1.42903 * 109.46442 * 30.00179 * 20 19 2 22 22 Si 1.86293 * 109.47256 * 149.99745 * 20 19 2 23 23 H 1.08993 * 109.47341 * 269.97412 * 1 2 3 24 24 H 1.09005 * 109.46988 * 29.97809 * 1 2 3 25 25 H 1.09005 * 109.47269 * 149.97167 * 1 2 3 26 26 H 0.96998 * 120.00390 * 0.02562 * 7 5 4 27 27 H 1.08993 * 113.61380 * 203.66745 * 10 8 7 28 28 H 1.09000 * 113.61493 * 334.49216 * 10 8 7 29 29 H 1.08991 * 109.47155 * 59.99659 * 14 13 11 30 30 H 1.09004 * 109.47099 * 179.97438 * 14 13 11 31 31 H 1.09004 * 109.47069 * 299.99439 * 14 13 11 32 32 H 1.09002 * 113.61830 * 25.43115 * 17 8 7 33 33 H 1.09006 * 113.61409 * 156.33615 * 17 8 7 34 34 H 1.08002 * 127.25017 * 180.24765 * 18 4 3 35 35 H 1.08999 * 109.47345 * 270.00249 * 20 19 2 36 36 H 0.96700 * 114.00311 * 60.00230 * 21 20 19 37 37 H 1.48501 * 109.99918 * 58.68485 * 22 20 19 38 38 H 1.48506 * 109.99973 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1998 1.0537 0.0000 4 6 3.4741 0.7167 -0.0006 5 6 4.6274 1.6397 -0.0002 6 8 5.7598 1.1974 -0.0003 7 7 4.4242 2.9720 0.0002 8 6 5.5681 3.8874 0.0011 9 1 6.4729 3.4345 -0.4041 10 6 5.2514 5.2696 -0.5939 11 6 4.8391 5.6985 0.8241 12 1 3.7884 5.5139 1.0480 13 16 5.3669 7.3791 1.2573 14 6 4.8667 7.4921 2.9973 15 8 6.7850 7.4399 1.1890 16 8 4.5956 8.3043 0.5034 17 6 5.7837 4.6026 1.3453 18 6 3.5272 -0.6973 0.0045 19 6 2.2373 -1.1077 -0.0005 20 6 1.7533 -2.5350 -0.0002 21 8 0.4950 -2.6113 -0.6732 22 14 2.9939 -3.6115 -0.8793 23 1 -0.3633 -0.0005 1.0276 24 1 -0.3633 0.8902 -0.5135 25 1 -0.3634 -0.8898 -0.5143 26 1 3.5207 3.3249 0.0007 27 1 6.1293 5.7942 -0.9709 28 1 4.4260 5.2598 -1.3058 29 1 5.3785 6.7213 3.5733 30 1 5.1323 8.4742 3.3887 31 1 3.7889 7.3488 3.0756 32 1 5.3871 4.0546 2.2001 33 1 6.8072 4.9449 1.4986 34 1 4.4108 -1.3183 0.0092 35 1 1.6373 -2.8791 1.0275 36 1 0.5234 -2.3198 -1.5947 37 1 4.3151 -3.5161 -0.2080 38 1 2.5280 -5.0216 -0.8864 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_12912156_13259642.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 14:03:36 Heat of formation + Delta-G solvation = -20.217062 kcal Electronic energy + Delta-G solvation = -24275.965596 eV Core-core repulsion = 20443.832528 eV Total energy + Delta-G solvation = -3832.133068 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 316.097 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.88105 -41.21021 -39.28041 -38.10961 -38.00011 -37.06025 -34.70260 -34.15612 -32.57076 -30.41831 -28.76918 -27.17707 -26.91415 -26.42018 -24.30478 -22.29465 -21.19663 -21.04652 -19.67951 -19.19223 -18.25272 -17.56019 -17.44233 -17.21105 -17.12336 -16.96019 -16.85106 -16.07762 -15.79272 -15.73758 -15.63542 -15.09837 -14.82025 -14.28241 -14.05814 -13.99734 -13.92402 -13.82988 -13.65401 -13.54618 -13.44180 -13.15784 -13.04123 -12.60525 -12.35241 -12.11386 -12.04615 -11.87677 -11.81149 -11.41778 -11.06540 -10.87029 -10.37923 -10.08292 -9.98725 -4.97166 -0.93634 0.38984 0.77566 1.17489 1.53302 1.69887 1.80777 1.94932 2.02624 2.21968 2.58485 2.86962 3.11371 3.18923 3.30502 3.31569 3.39412 3.56849 3.88309 3.99826 4.08550 4.22291 4.30548 4.33169 4.38554 4.46233 4.50540 4.53188 4.59119 4.61683 4.72187 4.79944 4.83984 4.92820 4.96811 5.18031 5.39697 5.65210 6.31362 6.52306 6.78548 7.05021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.257 5.257 3 N -0.259 5.259 4 C -0.038 4.038 5 C 0.608 3.392 6 O -0.565 6.565 7 N -0.688 5.688 8 C 0.123 3.877 9 H 0.101 0.899 10 C -0.118 4.118 11 C -0.588 4.588 12 H 0.182 0.818 13 S 2.427 3.573 14 C -0.642 4.642 15 O -0.979 6.979 16 O -0.987 6.987 17 C -0.125 4.125 18 C -0.196 4.196 19 C -0.007 4.007 20 C -0.034 4.034 21 O -0.541 6.541 22 Si 0.789 3.211 23 H 0.089 0.911 24 H 0.106 0.894 25 H 0.138 0.862 26 H 0.418 0.582 27 H 0.110 0.890 28 H 0.107 0.893 29 H 0.149 0.851 30 H 0.131 0.869 31 H 0.152 0.848 32 H 0.102 0.898 33 H 0.116 0.884 34 H 0.160 0.840 35 H 0.128 0.872 36 H 0.400 0.600 37 H -0.291 1.291 38 H -0.282 1.282 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.838 -2.996 0.344 8.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.046 5.046 3 N -0.097 5.097 4 C -0.196 4.196 5 C 0.394 3.606 6 O -0.442 6.442 7 N -0.339 5.339 8 C 0.016 3.984 9 H 0.119 0.881 10 C -0.157 4.157 11 C -0.699 4.699 12 H 0.200 0.800 13 S 2.614 3.386 14 C -0.795 4.795 15 O -0.976 6.976 16 O -0.984 6.984 17 C -0.164 4.164 18 C -0.225 4.225 19 C -0.132 4.132 20 C -0.145 4.145 21 O -0.349 6.349 22 Si 0.692 3.308 23 H 0.108 0.892 24 H 0.125 0.875 25 H 0.155 0.845 26 H 0.255 0.745 27 H 0.128 0.872 28 H 0.125 0.875 29 H 0.168 0.832 30 H 0.150 0.850 31 H 0.170 0.830 32 H 0.120 0.880 33 H 0.134 0.866 34 H 0.178 0.822 35 H 0.145 0.855 36 H 0.251 0.749 37 H -0.218 1.218 38 H -0.208 1.208 Dipole moment (debyes) X Y Z Total from point charges -7.125 -2.582 0.421 7.590 hybrid contribution -0.290 -0.565 1.178 1.338 sum -7.415 -3.146 1.599 8.212 Atomic orbital electron populations 1.22972 0.70363 1.08243 1.06032 1.45731 1.09062 1.01615 1.48201 1.73458 1.02396 1.14789 1.19038 1.21686 0.90980 0.94079 1.12882 1.17018 0.86346 0.82023 0.75241 1.90806 1.23993 1.77744 1.51649 1.45367 1.10531 1.04277 1.73747 1.21770 0.90110 0.89165 0.97341 0.88070 1.23084 1.04152 0.95044 0.93441 1.31679 1.12148 1.19218 1.06814 0.80045 1.07375 0.74534 0.77392 0.79262 1.30104 1.14542 1.12935 1.21885 1.93559 1.30245 1.86596 1.87189 1.93550 1.73041 1.61184 1.70606 1.23275 0.99844 0.94380 0.98949 1.21623 0.97307 0.93821 1.09716 1.22077 0.90603 0.92291 1.08240 1.24800 0.94434 0.92105 1.03158 1.86452 1.28985 1.88636 1.30861 0.93165 0.73481 0.75587 0.88539 0.89243 0.87540 0.84470 0.74458 0.87182 0.87472 0.83210 0.85017 0.82991 0.87983 0.86557 0.82237 0.85496 0.74862 1.21777 1.20830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 -0.58 11.00 127.77 1.41 0.83 16 2 N -0.26 0.53 3.70 -355.91 -1.32 -0.78 16 3 N -0.26 -0.45 11.67 -48.18 -0.56 -1.01 16 4 C -0.04 -0.19 7.13 42.45 0.30 0.11 16 5 C 0.61 4.08 7.82 86.75 0.68 4.75 16 6 O -0.57 -7.85 16.52 -3.94 -0.07 -7.91 16 7 N -0.69 0.13 5.26 -443.04 -2.33 -2.20 16 8 C 0.12 -0.15 4.32 45.51 0.20 0.05 16 9 H 0.10 0.25 7.46 -2.39 -0.02 0.23 16 10 C -0.12 0.50 7.42 31.12 0.23 0.73 16 11 C -0.59 4.23 4.04 31.12 0.13 4.35 16 12 H 0.18 -2.44 8.14 -2.38 -0.02 -2.46 16 13 S 2.43 -5.33 5.30 -56.49 -0.30 -5.63 16 14 C -0.64 5.99 10.62 113.37 1.20 7.19 16 15 O -0.98 -5.95 17.34 -127.37 -2.21 -8.16 16 16 O -0.99 -6.70 18.10 -127.37 -2.31 -9.00 16 17 C -0.13 0.62 7.42 31.12 0.23 0.85 16 18 C -0.20 -0.69 9.35 22.41 0.21 -0.48 16 19 C -0.01 0.01 6.17 41.41 0.26 0.27 16 20 C -0.03 0.20 2.99 71.24 0.21 0.41 16 21 O -0.54 4.82 10.02 -148.98 -1.49 3.33 16 22 Si 0.79 -3.78 31.38 68.60 2.15 -1.62 16 23 H 0.09 -0.87 8.14 -2.39 -0.02 -0.89 16 24 H 0.11 -1.21 8.14 -2.38 -0.02 -1.23 16 25 H 0.14 -1.74 5.00 -2.38 -0.01 -1.75 16 26 H 0.42 -1.82 8.43 -92.71 -0.78 -2.60 16 27 H 0.11 -0.42 8.10 -2.39 -0.02 -0.44 16 28 H 0.11 -0.69 8.14 -2.39 -0.02 -0.70 16 29 H 0.15 -1.93 8.14 -2.39 -0.02 -1.95 16 30 H 0.13 -1.14 8.14 -2.39 -0.02 -1.16 16 31 H 0.15 -2.08 8.14 -2.39 -0.02 -2.10 16 32 H 0.10 -0.69 8.14 -2.39 -0.02 -0.71 16 33 H 0.12 -0.54 7.48 -2.38 -0.02 -0.55 16 34 H 0.16 0.66 6.85 -2.91 -0.02 0.64 16 35 H 0.13 -0.72 7.96 -2.39 -0.02 -0.74 16 36 H 0.40 -6.52 8.39 -74.06 -0.62 -7.14 16 37 H -0.29 -0.66 6.83 99.48 0.68 0.02 16 38 H -0.28 -0.26 7.11 99.48 0.71 0.44 16 Total: 0.00 -33.38 336.33 -3.65 -37.03 By element: Atomic # 1 Polarization: -22.82 SS G_CDS: -0.28 Total: -23.10 kcal Atomic # 6 Polarization: 14.00 SS G_CDS: 5.05 Total: 19.06 kcal Atomic # 7 Polarization: 0.21 SS G_CDS: -4.21 Total: -4.00 kcal Atomic # 8 Polarization: -15.67 SS G_CDS: -6.07 Total: -21.74 kcal Atomic # 14 Polarization: -3.78 SS G_CDS: 2.15 Total: -1.62 kcal Atomic # 16 Polarization: -5.33 SS G_CDS: -0.30 Total: -5.63 kcal Total: -33.38 -3.65 -37.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_12912156_13259642.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.817 kcal (2) G-P(sol) polarization free energy of solvation -33.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds