Wall clock time and date at job start Thu Mar 4 2021 19:54:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.28462 * 124.88626 * 2 1 4 4 C 1.31812 * 110.07781 * 180.02562 * 3 2 1 5 5 C 1.47707 * 126.51904 * 179.97438 * 4 3 2 6 6 O 1.21572 * 119.99598 * 180.02562 * 5 4 3 7 7 N 1.34778 * 120.00096 * 0.02562 * 5 4 3 8 8 C 1.46496 * 120.00022 * 180.02562 * 7 5 4 9 9 H 1.09000 * 112.85095 * 336.20135 * 8 7 5 10 10 C 1.53784 * 113.61436 * 107.50291 * 8 7 5 11 11 C 1.53781 * 87.07981 * 89.11659 * 10 8 7 12 12 H 1.08999 * 113.61654 * 270.88525 * 11 10 8 13 13 N 1.46507 * 113.68933 * 139.98801 * 11 10 8 14 14 C 1.34775 * 119.99224 * 107.46630 * 13 11 10 15 15 O 1.21510 * 120.00434 * 359.97438 * 14 13 11 16 16 O 1.34644 * 119.99719 * 179.97438 * 14 13 11 17 17 C 1.45196 * 117.00111 * 179.97438 * 16 14 13 18 18 C 1.53006 * 109.46878 * 60.00543 * 17 16 14 19 19 C 1.53001 * 109.46989 * 180.02562 * 17 16 14 20 20 C 1.52995 * 109.47425 * 300.00387 * 17 16 14 21 21 C 1.53780 * 113.61649 * 205.00047 * 8 7 5 22 22 C 1.41505 * 106.95966 * 359.77126 * 4 3 2 23 23 C 1.35040 * 124.88657 * 180.02562 * 2 1 3 24 24 C 1.50700 * 126.38140 * 359.93917 * 23 2 1 25 25 O 1.42896 * 109.47341 * 330.00050 * 24 23 2 26 26 Si 1.86300 * 109.46849 * 209.99936 * 24 23 2 27 27 H 1.09002 * 109.46822 * 269.95553 * 1 2 3 28 28 H 1.08992 * 109.47020 * 29.96042 * 1 2 3 29 29 H 1.09010 * 109.46784 * 149.96338 * 1 2 3 30 30 H 0.97001 * 119.99851 * 0.02562 * 7 5 4 31 31 H 1.09004 * 113.61019 * 203.66411 * 10 8 7 32 32 H 1.08996 * 113.61410 * 334.56477 * 10 8 7 33 33 H 0.96998 * 120.00208 * 287.46658 * 13 11 10 34 34 H 1.09001 * 109.47426 * 59.99729 * 18 17 16 35 35 H 1.09004 * 109.46794 * 180.02562 * 18 17 16 36 36 H 1.09006 * 109.46728 * 299.99571 * 18 17 16 37 37 H 1.09000 * 109.47428 * 60.00158 * 19 17 16 38 38 H 1.09000 * 109.46789 * 180.02562 * 19 17 16 39 39 H 1.09001 * 109.46969 * 300.00059 * 19 17 16 40 40 H 1.09002 * 109.47505 * 60.00198 * 20 17 16 41 41 H 1.09004 * 109.47485 * 180.02562 * 20 17 16 42 42 H 1.09004 * 109.47404 * 299.99835 * 20 17 16 43 43 H 1.09006 * 113.61183 * 25.43733 * 21 8 7 44 44 H 1.08998 * 113.61707 * 156.24790 * 21 8 7 45 45 H 1.07994 * 127.24716 * 180.24655 * 22 4 3 46 46 H 1.09000 * 109.46989 * 90.00380 * 24 23 2 47 47 H 0.96693 * 114.00306 * 299.99773 * 25 24 23 48 48 H 1.48506 * 110.00048 * 58.68772 * 26 24 23 49 49 H 1.48502 * 109.99996 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1997 1.0538 0.0000 4 6 3.4741 0.7169 -0.0006 5 6 4.6273 1.6398 -0.0013 6 8 5.7597 1.1976 -0.0022 7 7 4.4241 2.9722 -0.0009 8 6 5.5678 3.8876 -0.0022 9 1 6.4730 3.4345 0.4020 10 6 5.7823 4.6035 -1.3462 11 6 4.8381 5.6991 -0.8237 12 1 3.7876 5.5133 -1.0472 13 7 5.2624 7.0573 -1.1723 14 6 4.5890 7.7540 -2.1091 15 8 3.6302 7.2554 -2.6648 16 8 4.9785 9.0024 -2.4293 17 6 4.2071 9.6931 -3.4471 18 6 2.7538 9.8215 -2.9860 19 6 4.7955 11.0870 -3.6748 20 6 4.2593 8.8984 -4.7535 21 6 5.2516 5.2695 0.5938 22 6 3.5272 -0.6972 0.0045 23 6 2.2374 -1.1077 -0.0005 24 6 1.7534 -2.5349 0.0002 25 8 0.4961 -2.6112 0.6749 26 14 2.9954 -3.6113 0.8775 27 1 -0.3633 -0.0008 1.0277 28 1 -0.3633 0.8903 -0.5132 29 1 -0.3633 -0.8898 -0.5145 30 1 3.5205 3.3250 0.0002 31 1 6.8057 4.9460 -1.4999 32 1 5.3852 4.0559 -2.2008 33 1 6.0280 7.4552 -0.7290 34 1 2.7166 10.3876 -2.0553 35 1 2.1746 10.3396 -3.7503 36 1 2.3349 8.8282 -2.8241 37 1 5.8307 10.9952 -4.0034 38 1 4.2160 11.6056 -4.4386 39 1 4.7585 11.6533 -2.7442 40 1 3.8403 7.9052 -4.5917 41 1 3.6805 9.4171 -5.5178 42 1 5.2946 8.8069 -5.0820 43 1 4.4259 5.2595 1.3054 44 1 6.1295 5.7934 0.9717 45 1 4.4108 -1.3181 0.0092 46 1 1.6359 -2.8791 -1.0274 47 1 0.5258 -2.3197 1.5963 48 1 3.1883 -3.1328 2.2700 49 1 2.5301 -5.0215 0.8844 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_13941010_13259642.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 19:54:53 Heat of formation + Delta-G solvation = -38.920002 kcal Electronic energy + Delta-G solvation = -31422.730832 eV Core-core repulsion = 26968.595729 eV Total energy + Delta-G solvation = -4454.135103 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 353.183 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -43.85753 -41.96641 -41.12576 -39.55918 -38.17473 -37.93406 -35.59765 -34.88490 -34.42246 -33.33566 -32.47729 -28.66746 -28.38846 -28.31736 -26.92168 -26.80721 -26.06389 -24.33479 -23.09859 -22.23817 -21.42376 -20.99476 -20.55850 -19.34522 -19.06339 -18.03303 -17.63805 -17.50586 -17.22238 -17.17231 -17.00638 -16.59179 -16.06314 -15.86784 -15.72748 -15.64968 -15.43626 -15.31044 -14.86975 -14.61804 -14.48727 -14.09075 -13.94947 -13.65705 -13.51082 -13.42508 -13.37508 -13.17915 -13.14033 -12.92858 -12.88255 -12.69007 -12.56214 -12.32378 -12.28025 -12.00369 -11.97121 -11.68264 -11.41107 -11.35841 -11.13162 -11.08365 -10.35527 -10.20121 -10.01378 -9.98435 -4.88683 0.41555 0.81521 1.15972 1.21515 1.53456 1.67569 1.71627 1.93589 2.05039 2.26847 3.08860 3.13366 3.29101 3.32352 3.34605 3.48036 3.72523 3.77340 3.81513 3.92728 3.94642 3.98080 4.27990 4.34508 4.41301 4.43994 4.48143 4.54308 4.59121 4.63446 4.65350 4.68255 4.70200 4.74580 4.77624 4.82438 4.83477 4.85959 4.93060 4.96344 5.10190 5.22834 5.25013 5.25781 5.33811 5.51361 5.58259 5.66159 6.27088 6.32886 6.39487 6.79300 7.07669 7.32821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.265 5.265 3 N -0.267 5.267 4 C -0.041 4.041 5 C 0.609 3.391 6 O -0.560 6.560 7 N -0.695 5.695 8 C 0.120 3.880 9 H 0.110 0.890 10 C -0.161 4.161 11 C 0.138 3.862 12 H 0.103 0.897 13 N -0.687 5.687 14 C 0.642 3.358 15 O -0.595 6.595 16 O -0.369 6.369 17 C 0.127 3.873 18 C -0.180 4.180 19 C -0.138 4.138 20 C -0.180 4.180 21 C -0.130 4.130 22 C -0.185 4.185 23 C -0.013 4.013 24 C -0.046 4.046 25 O -0.538 6.538 26 Si 0.784 3.216 27 H 0.101 0.899 28 H 0.099 0.901 29 H 0.116 0.884 30 H 0.413 0.587 31 H 0.111 0.889 32 H 0.060 0.940 33 H 0.420 0.580 34 H 0.062 0.938 35 H 0.086 0.914 36 H 0.063 0.937 37 H 0.069 0.931 38 H 0.098 0.902 39 H 0.070 0.930 40 H 0.062 0.938 41 H 0.086 0.914 42 H 0.061 0.939 43 H 0.093 0.907 44 H 0.129 0.871 45 H 0.183 0.817 46 H 0.145 0.855 47 H 0.388 0.612 48 H -0.293 1.293 49 H -0.284 1.284 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.147 1.539 1.309 2.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.054 5.054 3 N -0.105 5.105 4 C -0.199 4.199 5 C 0.394 3.606 6 O -0.436 6.436 7 N -0.345 5.345 8 C 0.014 3.986 9 H 0.128 0.872 10 C -0.201 4.201 11 C 0.034 3.966 12 H 0.121 0.879 13 N -0.347 5.347 14 C 0.396 3.604 15 O -0.486 6.486 16 O -0.283 6.283 17 C 0.091 3.909 18 C -0.237 4.237 19 C -0.195 4.195 20 C -0.237 4.237 21 C -0.169 4.169 22 C -0.213 4.213 23 C -0.138 4.138 24 C -0.156 4.156 25 O -0.345 6.345 26 Si 0.687 3.313 27 H 0.119 0.881 28 H 0.118 0.882 29 H 0.135 0.865 30 H 0.250 0.750 31 H 0.129 0.871 32 H 0.078 0.922 33 H 0.257 0.743 34 H 0.082 0.918 35 H 0.105 0.895 36 H 0.082 0.918 37 H 0.088 0.912 38 H 0.116 0.884 39 H 0.089 0.911 40 H 0.081 0.919 41 H 0.105 0.895 42 H 0.080 0.920 43 H 0.111 0.889 44 H 0.147 0.853 45 H 0.201 0.799 46 H 0.162 0.838 47 H 0.238 0.762 48 H -0.220 1.220 49 H -0.211 1.211 Dipole moment (debyes) X Y Z Total from point charges -1.734 1.259 1.078 2.399 hybrid contribution -0.674 0.114 0.653 0.945 sum -2.408 1.373 1.731 3.268 Atomic orbital electron populations 1.22605 0.70816 1.06640 1.06051 1.45690 1.08973 1.01942 1.48808 1.73473 1.02825 1.14824 1.19361 1.21822 0.90850 0.94570 1.12689 1.16988 0.86398 0.81940 0.75250 1.90789 1.23624 1.77631 1.51579 1.45503 1.10569 1.04690 1.73773 1.21729 0.90218 0.89427 0.97218 0.87179 1.23999 1.01734 0.96626 0.97710 1.22662 0.99423 0.78148 0.96410 0.87936 1.44717 1.34164 1.15637 1.40148 1.18451 0.81370 0.80420 0.80168 1.90904 1.30281 1.71389 1.56030 1.86315 1.57965 1.26607 1.57457 1.22343 0.90967 0.92377 0.85220 1.22472 0.95118 1.03478 1.02614 1.21890 1.02265 0.91681 1.03624 1.22473 1.02910 1.01784 0.96573 1.23732 1.04593 0.93379 0.95198 1.21727 0.97459 0.93421 1.08701 1.22204 0.91008 0.92084 1.08553 1.24875 0.93513 0.92051 1.05129 1.86579 1.29365 1.88560 1.30030 0.93209 0.83877 0.74720 0.79475 0.88055 0.88207 0.86523 0.75022 0.87112 0.92163 0.74265 0.91847 0.89533 0.91816 0.91186 0.88365 0.91097 0.91899 0.89505 0.91994 0.88866 0.85261 0.79937 0.83755 0.76190 1.21990 1.21066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 -0.45 10.12 127.77 1.29 0.84 16 2 N -0.26 -0.27 3.70 -355.92 -1.32 -1.58 16 3 N -0.27 -1.34 11.67 -48.17 -0.56 -1.90 16 4 C -0.04 -0.28 7.13 42.46 0.30 0.02 16 5 C 0.61 4.95 7.82 86.75 0.68 5.63 16 6 O -0.56 -7.67 16.52 -3.94 -0.07 -7.74 16 7 N -0.69 -1.69 5.26 -443.04 -2.33 -4.02 16 8 C 0.12 -0.09 4.32 45.52 0.20 0.11 16 9 H 0.11 0.11 7.46 -2.39 -0.02 0.10 16 10 C -0.16 0.06 7.68 31.12 0.24 0.29 16 11 C 0.14 -0.16 4.11 45.52 0.19 0.02 16 12 H 0.10 0.26 7.46 -2.39 -0.02 0.24 16 13 N -0.69 0.17 5.36 -567.59 -3.04 -2.87 16 14 C 0.64 4.28 8.06 129.79 1.05 5.32 16 15 O -0.60 -7.30 11.48 19.81 0.23 -7.08 16 16 O -0.37 -2.01 9.94 -55.54 -0.55 -2.56 16 17 C 0.13 0.40 1.13 -10.79 -0.01 0.39 16 18 C -0.18 -0.60 8.37 71.98 0.60 0.01 16 19 C -0.14 0.27 8.85 71.98 0.64 0.91 16 20 C -0.18 -0.69 8.37 71.98 0.60 -0.08 16 21 C -0.13 0.78 7.58 31.12 0.24 1.01 16 22 C -0.19 -0.62 9.35 22.41 0.21 -0.41 16 23 C -0.01 0.00 6.18 41.40 0.26 0.25 16 24 C -0.05 0.20 2.87 71.24 0.20 0.40 16 25 O -0.54 2.36 10.40 -148.98 -1.55 0.81 16 26 Si 0.78 -2.86 31.22 68.60 2.14 -0.72 16 27 H 0.10 -0.91 8.14 -2.39 -0.02 -0.93 16 28 H 0.10 -0.66 8.14 -2.39 -0.02 -0.68 16 29 H 0.12 -0.85 6.77 -2.38 -0.02 -0.87 16 30 H 0.41 0.13 8.43 -92.71 -0.78 -0.65 16 31 H 0.11 -0.30 8.14 -2.39 -0.02 -0.32 16 32 H 0.06 0.25 8.14 -2.39 -0.02 0.23 16 33 H 0.42 -2.29 8.84 -92.71 -0.82 -3.11 16 34 H 0.06 0.15 8.14 -2.39 -0.02 0.13 16 35 H 0.09 0.00 8.14 -2.39 -0.02 -0.02 16 36 H 0.06 0.55 5.88 -2.38 -0.01 0.54 16 37 H 0.07 -0.15 8.14 -2.39 -0.02 -0.17 16 38 H 0.10 -0.51 8.14 -2.39 -0.02 -0.53 16 39 H 0.07 -0.17 8.14 -2.39 -0.02 -0.19 16 40 H 0.06 0.59 5.88 -2.39 -0.01 0.57 16 41 H 0.09 0.03 8.14 -2.39 -0.02 0.01 16 42 H 0.06 0.20 8.14 -2.39 -0.02 0.18 16 43 H 0.09 -0.61 8.14 -2.38 -0.02 -0.63 16 44 H 0.13 -1.32 8.12 -2.39 -0.02 -1.34 16 45 H 0.18 -0.04 7.01 -2.91 -0.02 -0.06 16 46 H 0.15 -1.02 7.96 -2.39 -0.02 -1.04 16 47 H 0.39 -3.43 8.70 -74.06 -0.64 -4.08 16 48 H -0.29 -0.79 7.11 99.48 0.71 -0.08 16 49 H -0.28 -0.62 7.11 99.48 0.71 0.08 16 Total: 0.00 -23.96 401.96 -1.57 -25.54 By element: Atomic # 1 Polarization: -11.40 SS G_CDS: -1.20 Total: -12.60 kcal Atomic # 6 Polarization: 8.03 SS G_CDS: 6.68 Total: 14.71 kcal Atomic # 7 Polarization: -3.12 SS G_CDS: -7.25 Total: -10.37 kcal Atomic # 8 Polarization: -14.62 SS G_CDS: -1.94 Total: -16.56 kcal Atomic # 14 Polarization: -2.86 SS G_CDS: 2.14 Total: -0.72 kcal Total: -23.96 -1.57 -25.54 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_13941010_13259642.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.384 kcal (2) G-P(sol) polarization free energy of solvation -23.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds