Wall clock time and date at job start Thu Mar 4 2021 18:00:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.35447 * 125.56018 * 2 1 4 4 C 1.50699 * 126.07212 * 0.02562 * 3 2 1 5 5 O 1.42898 * 109.47280 * 236.32401 * 4 3 2 6 6 Si 1.86303 * 109.47075 * 116.32740 * 4 3 2 7 7 C 1.39839 * 107.86354 * 180.28653 * 3 2 1 8 8 C 1.50697 * 126.46373 * 179.73911 * 7 3 2 9 9 C 1.37879 * 107.08156 * 359.57601 * 7 3 2 10 10 C 1.46677 * 126.23111 * 180.12076 * 9 7 3 11 11 O 1.21691 * 120.00530 * 0.32645 * 10 9 7 12 12 N 1.34775 * 119.99741 * 180.33500 * 10 9 7 13 13 C 1.46497 * 120.00124 * 179.97438 * 12 10 9 14 14 C 1.52999 * 109.47382 * 274.99845 * 13 12 10 15 15 C 1.53002 * 109.46931 * 299.99977 * 14 13 12 16 16 C 1.53005 * 109.46697 * 299.99722 * 15 14 13 17 17 C 1.52999 * 109.47203 * 60.00445 * 16 15 14 18 18 C 1.53002 * 109.46931 * 299.99412 * 17 16 15 19 19 C 1.52996 * 109.47407 * 300.00404 * 18 17 16 20 20 C 1.52999 * 109.47405 * 59.99886 * 19 18 17 21 21 O 1.42901 * 109.47280 * 180.02562 * 20 19 18 22 22 C 1.53004 * 109.47156 * 299.99821 * 16 15 14 23 23 C 1.52997 * 109.47019 * 59.99960 * 20 19 18 24 24 N 1.35527 * 125.56345 * 180.02562 * 2 1 3 25 25 H 1.08997 * 109.47618 * 84.64668 * 1 2 3 26 26 H 1.08999 * 109.47102 * 204.65375 * 1 2 3 27 27 H 1.09005 * 109.46690 * 324.64620 * 1 2 3 28 28 H 1.09001 * 109.46974 * 356.32729 * 4 3 2 29 29 H 0.96697 * 114.00647 * 179.97438 * 5 4 3 30 30 H 1.48500 * 110.00207 * 59.99902 * 6 4 3 31 31 H 1.48501 * 109.99652 * 181.32261 * 6 4 3 32 32 H 1.08997 * 109.47034 * 89.99128 * 8 7 3 33 33 H 1.08993 * 109.47693 * 210.00108 * 8 7 3 34 34 H 1.09001 * 109.46897 * 330.00204 * 8 7 3 35 35 H 0.97004 * 120.00391 * 359.97438 * 12 10 9 36 36 H 1.09002 * 109.47081 * 35.00072 * 13 12 10 37 37 H 1.09000 * 109.47348 * 59.99915 * 14 13 12 38 38 H 1.09003 * 109.46664 * 180.02562 * 15 14 13 39 39 H 1.08998 * 109.47099 * 59.99871 * 15 14 13 40 40 H 1.09002 * 109.46418 * 180.02562 * 16 15 14 41 41 H 1.09000 * 109.46920 * 180.02562 * 17 16 15 42 42 H 1.08998 * 109.47334 * 59.99397 * 17 16 15 43 43 H 1.09002 * 109.47186 * 179.97438 * 18 17 16 44 44 H 1.09000 * 109.47287 * 179.97438 * 19 18 17 45 45 H 1.09004 * 109.46934 * 300.00110 * 19 18 17 46 46 H 0.96692 * 114.00771 * 59.99681 * 21 20 19 47 47 H 1.09000 * 109.46655 * 180.02562 * 22 16 15 48 48 H 1.08995 * 109.47211 * 300.00382 * 22 16 15 49 49 H 1.09000 * 109.47117 * 60.00412 * 23 20 19 50 50 H 1.09002 * 109.46826 * 180.02562 * 23 20 19 51 51 H 0.97004 * 125.67917 * 359.95077 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2948 1.1019 0.0000 4 6 1.8199 2.5321 0.0005 5 8 2.3783 3.2199 -1.1206 6 14 2.3641 3.3665 1.5749 7 6 3.6270 0.6768 -0.0067 8 6 4.8486 1.5592 -0.0146 9 6 3.6122 -0.7019 -0.0009 10 6 4.7860 -1.5815 -0.0021 11 8 5.9049 -1.1031 -0.0028 12 7 4.6253 -2.9196 -0.0027 13 6 5.7976 -3.7981 -0.0046 14 6 6.2795 -4.0026 -1.4422 15 6 5.1618 -4.6419 -2.2686 16 6 4.7867 -5.9943 -1.6592 17 6 4.3048 -5.7898 -0.2215 18 6 5.4225 -5.1505 0.6049 19 6 6.6469 -6.0680 0.6030 20 6 7.1288 -6.2725 -0.8347 21 8 8.2720 -7.1299 -0.8365 22 6 6.0111 -6.9118 -1.6612 23 6 7.5039 -4.9201 -1.4440 24 7 2.2953 -1.1025 -0.0005 25 1 -0.3634 0.0959 -1.0231 26 1 -0.3633 -0.9340 0.4287 27 1 -0.3633 0.8382 0.5947 28 1 0.7321 2.5537 -0.0649 29 1 2.1145 4.1480 -1.1841 30 1 3.8455 3.3436 1.6760 31 1 1.8747 4.7683 1.6020 32 1 5.1486 1.7735 1.0111 33 1 5.6614 1.0498 -0.5321 34 1 4.6191 2.4926 -0.5285 35 1 3.7334 -3.3011 -0.0019 36 1 6.5939 -3.3427 0.5843 37 1 6.5468 -3.0392 -1.8764 38 1 5.5053 -4.7880 -3.2927 39 1 4.2895 -3.9883 -2.2673 40 1 3.9907 -6.4499 -2.2482 41 1 4.0380 -6.7533 0.2127 42 1 3.4326 -5.1362 -0.2202 43 1 5.0791 -5.0044 1.6290 44 1 7.4433 -5.6123 1.1913 45 1 6.3796 -7.0315 1.0371 46 1 8.1068 -8.0065 -0.4636 47 1 5.7436 -7.8754 -1.2274 48 1 6.3543 -7.0575 -2.6854 49 1 8.3001 -4.4647 -0.8553 50 1 7.8467 -5.0658 -2.4684 51 1 1.9834 -2.0210 -0.0002 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_15142604_12297754.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 18:00:25 Heat of formation + Delta-G solvation = -91.837006 kcal Electronic energy + Delta-G solvation = -32793.653565 eV Core-core repulsion = 28658.531683 eV Total energy + Delta-G solvation = -4135.121883 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -42.99609 -42.46955 -40.07478 -37.78616 -37.64320 -35.53641 -33.87030 -33.79668 -33.40075 -32.78428 -31.09008 -29.23834 -27.83550 -27.03988 -26.81572 -25.74365 -23.16001 -22.66315 -22.51192 -21.82008 -20.68201 -20.05886 -19.49016 -18.63601 -18.38314 -18.02136 -16.95851 -16.80318 -16.49357 -15.97904 -15.87784 -15.62323 -15.36444 -15.31028 -15.17822 -14.95626 -14.67697 -14.44432 -14.40569 -14.29890 -14.18551 -13.84693 -13.65224 -13.55445 -13.52811 -13.36932 -13.24691 -13.10416 -13.05820 -12.57285 -12.49069 -12.48466 -12.10110 -12.00434 -11.84352 -11.82202 -11.56454 -11.29415 -11.08234 -10.80739 -10.66284 -10.49359 -10.15381 -9.49288 -8.94089 -4.88747 0.36179 1.24723 1.56136 1.69642 1.92108 2.10696 2.13252 2.27431 3.11946 3.34493 3.40105 3.52726 3.74645 3.78294 3.86055 3.92592 3.93290 4.04569 4.06579 4.08478 4.12395 4.17518 4.20089 4.21929 4.33896 4.42408 4.47552 4.51945 4.56186 4.63903 4.65937 4.69556 4.73360 4.80767 4.87143 4.92843 4.95566 4.96805 4.99322 5.00777 5.04548 5.08487 5.11528 5.21843 5.24605 5.28008 5.31655 5.33647 5.43801 5.46042 5.70167 5.85928 6.38332 6.55918 6.73615 6.86135 7.09155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.102 3.898 3 C -0.194 4.194 4 C -0.031 4.031 5 O -0.557 6.557 6 Si 0.734 3.266 7 C -0.073 4.073 8 C -0.088 4.088 9 C -0.080 4.080 10 C 0.588 3.412 11 O -0.569 6.569 12 N -0.706 5.706 13 C 0.161 3.839 14 C -0.088 4.088 15 C -0.107 4.107 16 C -0.081 4.081 17 C -0.108 4.108 18 C -0.083 4.083 19 C -0.132 4.132 20 C 0.135 3.865 21 O -0.581 6.581 22 C -0.134 4.134 23 C -0.100 4.100 24 N -0.518 5.518 25 H 0.086 0.914 26 H 0.093 0.907 27 H 0.104 0.896 28 H 0.101 0.899 29 H 0.390 0.610 30 H -0.300 1.300 31 H -0.284 1.284 32 H 0.055 0.945 33 H 0.059 0.941 34 H 0.063 0.937 35 H 0.408 0.592 36 H 0.064 0.936 37 H 0.052 0.948 38 H 0.059 0.941 39 H 0.068 0.932 40 H 0.091 0.909 41 H 0.088 0.912 42 H 0.078 0.922 43 H 0.093 0.907 44 H 0.060 0.940 45 H 0.093 0.907 46 H 0.392 0.608 47 H 0.084 0.916 48 H 0.060 0.940 49 H 0.053 0.947 50 H 0.062 0.938 51 H 0.433 0.567 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.666 -5.929 2.695 13.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.018 4.018 3 C -0.200 4.200 4 C -0.142 4.142 5 O -0.366 6.366 6 Si 0.640 3.360 7 C -0.082 4.082 8 C -0.145 4.145 9 C -0.191 4.191 10 C 0.378 3.622 11 O -0.448 6.448 12 N -0.358 5.358 13 C 0.056 3.944 14 C -0.108 4.108 15 C -0.144 4.144 16 C -0.099 4.099 17 C -0.145 4.145 18 C -0.102 4.102 19 C -0.171 4.171 20 C 0.095 3.905 21 O -0.389 6.389 22 C -0.171 4.171 23 C -0.138 4.138 24 N -0.117 5.117 25 H 0.105 0.895 26 H 0.112 0.888 27 H 0.123 0.877 28 H 0.119 0.881 29 H 0.240 0.760 30 H -0.227 1.227 31 H -0.210 1.210 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.246 0.754 36 H 0.082 0.918 37 H 0.070 0.930 38 H 0.078 0.922 39 H 0.087 0.913 40 H 0.109 0.891 41 H 0.107 0.893 42 H 0.097 0.903 43 H 0.111 0.889 44 H 0.078 0.922 45 H 0.112 0.888 46 H 0.242 0.758 47 H 0.103 0.897 48 H 0.079 0.921 49 H 0.071 0.929 50 H 0.081 0.919 51 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges -9.877 -5.220 2.690 11.491 hybrid contribution 0.283 0.188 -0.903 0.964 sum -9.594 -5.032 1.787 10.980 Atomic orbital electron populations 1.20701 0.84144 1.05919 1.04564 1.20702 0.95005 0.84464 1.01654 1.18570 0.91726 0.94026 1.15651 1.23989 1.00960 0.91854 0.97363 1.86598 1.75077 1.28631 1.46280 0.94486 0.79809 0.79216 0.82493 1.19841 0.95345 0.91657 1.01385 1.20315 0.94902 0.98182 1.01095 1.19805 0.83886 0.93396 1.22044 1.17216 0.87176 0.82185 0.75663 1.90819 1.25984 1.75878 1.52160 1.45749 1.10391 1.04477 1.75214 1.20873 0.87570 0.90280 0.95681 1.21298 0.95445 0.97844 0.96173 1.21545 0.97620 0.96769 0.98492 1.21059 0.97314 0.94465 0.97066 1.21637 0.96770 1.02161 0.93976 1.21270 0.96420 0.92087 1.00448 1.22143 0.97406 1.01163 0.96345 1.21092 0.85286 0.89668 0.94483 1.86538 1.36894 1.29326 1.86177 1.22173 0.95045 0.99435 1.00475 1.21379 0.97217 0.94100 1.01145 1.41679 1.03884 1.09279 1.56810 0.89520 0.88806 0.87696 0.88126 0.75987 1.22750 1.21027 0.92599 0.92255 0.91770 0.75426 0.91794 0.92984 0.92231 0.91288 0.89110 0.89301 0.90323 0.88912 0.92161 0.88814 0.75839 0.89706 0.92137 0.92859 0.91918 0.72611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 1.07 9.90 71.24 0.71 1.78 16 2 C 0.10 -0.30 7.13 41.34 0.29 0.00 16 3 C -0.19 -0.69 4.51 -20.12 -0.09 -0.78 16 4 C -0.03 -0.01 2.77 71.24 0.20 0.18 16 5 O -0.56 -2.27 11.65 -148.98 -1.74 -4.00 16 6 Si 0.73 0.93 31.63 68.60 2.17 3.10 16 7 C -0.07 -0.70 5.86 -19.56 -0.11 -0.82 16 8 C -0.09 -1.20 8.11 71.23 0.58 -0.62 16 9 C -0.08 -0.45 7.06 40.35 0.28 -0.17 16 10 C 0.59 4.77 7.75 86.45 0.67 5.44 16 11 O -0.57 -9.84 14.47 -4.32 -0.06 -9.91 16 12 N -0.71 0.17 4.23 -446.50 -1.89 -1.72 16 13 C 0.16 0.24 2.05 44.99 0.09 0.34 16 14 C -0.09 -0.30 2.87 -10.79 -0.03 -0.33 16 15 C -0.11 0.14 5.04 30.60 0.15 0.29 16 16 C -0.08 0.45 3.19 -10.79 -0.03 0.42 16 17 C -0.11 0.93 5.02 30.59 0.15 1.09 16 18 C -0.08 0.38 2.88 -10.79 -0.03 0.35 16 19 C -0.13 0.37 4.81 30.59 0.15 0.52 16 20 C 0.13 0.02 1.15 -10.79 -0.01 0.01 16 21 O -0.58 -1.48 12.98 -148.98 -1.93 -3.41 16 22 C -0.13 0.46 4.81 30.60 0.15 0.61 16 23 C -0.10 -0.49 4.84 30.59 0.15 -0.34 16 24 N -0.52 1.81 5.99 -171.93 -1.03 0.78 16 25 H 0.09 -0.97 8.14 -2.39 -0.02 -0.99 16 26 H 0.09 -1.41 8.14 -2.39 -0.02 -1.43 16 27 H 0.10 -1.42 7.41 -2.38 -0.02 -1.44 16 28 H 0.10 -0.62 6.75 -2.39 -0.02 -0.63 16 29 H 0.39 -1.59 8.74 -74.06 -0.65 -2.24 16 30 H -0.30 -3.17 5.93 99.48 0.59 -2.58 16 31 H -0.28 -1.23 7.11 99.48 0.71 -0.53 16 32 H 0.06 0.80 7.45 -2.39 -0.02 0.79 16 33 H 0.06 1.02 6.50 -2.39 -0.02 1.00 16 34 H 0.06 0.88 6.68 -2.39 -0.02 0.86 16 35 H 0.41 -3.01 6.00 -92.71 -0.56 -3.57 16 36 H 0.06 0.50 7.58 -2.39 -0.02 0.48 16 37 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 38 H 0.06 0.03 8.14 -2.39 -0.02 0.01 16 39 H 0.07 -0.16 7.60 -2.39 -0.02 -0.18 16 40 H 0.09 -0.68 8.14 -2.39 -0.02 -0.70 16 41 H 0.09 -0.95 8.14 -2.39 -0.02 -0.97 16 42 H 0.08 -0.93 6.50 -2.39 -0.02 -0.95 16 43 H 0.09 -0.56 8.14 -2.39 -0.02 -0.58 16 44 H 0.06 0.04 8.14 -2.39 -0.02 0.02 16 45 H 0.09 -0.63 8.14 -2.38 -0.02 -0.65 16 46 H 0.39 -2.24 9.04 -74.06 -0.67 -2.91 16 47 H 0.08 -0.57 8.14 -2.39 -0.02 -0.59 16 48 H 0.06 -0.04 8.14 -2.39 -0.02 -0.06 16 49 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 50 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 51 H 0.43 -4.94 8.19 -92.71 -0.76 -5.70 16 Total: 0.00 -26.50 378.02 -2.95 -29.45 By element: Atomic # 1 Polarization: -20.52 SS G_CDS: -1.72 Total: -22.25 kcal Atomic # 6 Polarization: 4.70 SS G_CDS: 3.26 Total: 7.96 kcal Atomic # 7 Polarization: 1.98 SS G_CDS: -2.92 Total: -0.94 kcal Atomic # 8 Polarization: -13.59 SS G_CDS: -3.73 Total: -17.32 kcal Atomic # 14 Polarization: 0.93 SS G_CDS: 2.17 Total: 3.10 kcal Total: -26.50 -2.95 -29.45 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_15142604_12297754.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.387 kcal (2) G-P(sol) polarization free energy of solvation -26.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds