Wall clock time and date at job start Thu Mar 4 2021 18:01:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86303 * 109.47021 * 2 1 4 4 C 1.50703 * 109.47274 * 119.99968 * 2 1 3 5 5 C 1.34832 * 125.65080 * 65.27235 * 4 2 1 6 6 C 1.40795 * 107.04964 * 180.14508 * 5 4 2 7 7 C 1.36109 * 106.73337 * 359.60553 * 6 5 4 8 8 C 1.47569 * 125.94733 * 180.24168 * 7 6 5 9 9 C 1.39921 * 119.95344 * 0.02562 * 8 7 6 10 10 C 1.36426 * 120.27867 * 179.97438 * 9 8 7 11 11 C 1.39874 * 120.18593 * 0.02562 * 10 9 8 12 12 C 1.47294 * 120.04807 * 180.02562 * 11 10 9 13 13 O 1.21620 * 120.00131 * 179.97438 * 12 11 10 14 14 N 1.34781 * 119.99917 * 0.02562 * 12 11 10 15 15 C 1.46500 * 120.00062 * 179.97438 * 14 12 11 16 16 C 1.53001 * 109.47040 * 275.00360 * 15 14 12 17 17 C 1.53006 * 109.46827 * 299.99924 * 16 15 14 18 18 C 1.52999 * 109.47025 * 300.00148 * 17 16 15 19 19 C 1.53001 * 109.47439 * 60.00226 * 18 17 16 20 20 C 1.52999 * 109.47153 * 155.00003 * 15 14 12 21 21 C 1.52997 * 109.46985 * 179.97438 * 20 15 14 22 22 C 1.52991 * 109.47583 * 300.00100 * 21 20 15 23 23 O 1.42900 * 109.47272 * 179.97438 * 22 21 20 24 24 C 1.53000 * 109.47468 * 300.00041 * 18 17 16 25 25 C 1.53000 * 109.47315 * 180.02562 * 16 15 14 26 26 C 1.40409 * 119.90504 * 359.97438 * 11 10 9 27 27 O 1.35686 * 120.13460 * 179.97438 * 26 11 10 28 28 C 1.38274 * 119.72613 * 359.73977 * 26 11 10 29 29 O 1.34226 * 125.65143 * 244.97748 * 4 2 1 30 30 H 0.96702 * 114.00033 * 299.99871 * 1 2 3 31 31 H 1.08995 * 109.47262 * 240.00289 * 2 1 3 32 32 H 1.48500 * 110.00223 * 299.99966 * 3 2 1 33 33 H 1.48500 * 109.99949 * 61.32270 * 3 2 1 34 34 H 1.07995 * 126.47640 * 359.97438 * 5 4 2 35 35 H 1.08002 * 126.63743 * 179.87482 * 6 5 4 36 36 H 1.08003 * 119.86441 * 359.95618 * 9 8 7 37 37 H 1.08004 * 119.90694 * 180.02562 * 10 9 8 38 38 H 0.97004 * 119.99572 * 359.97438 * 14 12 11 39 39 H 1.08995 * 109.46996 * 34.99781 * 15 14 12 40 40 H 1.08998 * 109.47394 * 59.99727 * 16 15 14 41 41 H 1.08999 * 109.47115 * 180.02562 * 17 16 15 42 42 H 1.08998 * 109.47398 * 60.00454 * 17 16 15 43 43 H 1.09001 * 109.47032 * 180.02562 * 18 17 16 44 44 H 1.08998 * 109.47394 * 180.02562 * 19 18 17 45 45 H 1.08998 * 109.46761 * 59.99831 * 19 18 17 46 46 H 1.08999 * 109.47002 * 300.00028 * 20 15 14 47 47 H 1.09001 * 109.46749 * 60.00423 * 21 20 15 48 48 H 1.09002 * 109.47003 * 179.97438 * 21 20 15 49 49 H 0.96692 * 114.00166 * 60.00385 * 23 22 21 50 50 H 1.08998 * 109.47565 * 179.97438 * 24 18 17 51 51 H 1.08998 * 109.46930 * 300.00576 * 24 18 17 52 52 H 1.09001 * 109.46457 * 299.99780 * 25 16 15 53 53 H 1.08998 * 109.47303 * 180.02562 * 25 16 15 54 54 H 0.96695 * 114.00151 * 89.99753 * 27 26 11 55 55 H 1.08001 * 120.09335 * 180.27232 * 28 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7104 1.2305 5 6 1.7612 -2.0191 1.5069 6 6 2.3803 -2.2628 2.7477 7 6 2.9080 -1.0785 3.1617 8 6 3.6574 -0.8542 4.4130 9 6 3.8785 -1.9177 5.2951 10 6 4.5709 -1.7180 6.4535 11 6 5.0645 -0.4475 6.7677 12 6 5.8122 -0.2354 8.0189 13 8 6.2414 0.8695 8.2911 14 7 6.0215 -1.2661 8.8618 15 6 6.7657 -1.0553 10.1060 16 6 8.2660 -1.1685 9.8284 17 6 8.5789 -2.5609 9.2766 18 6 8.1685 -3.6198 10.3019 19 6 6.6682 -3.5066 10.5795 20 6 6.3553 -2.1143 11.1313 21 6 7.1329 -1.8945 12.4305 22 6 8.6331 -2.0081 12.1525 23 8 9.3593 -1.8023 13.3659 24 6 8.9456 -3.3998 11.6013 25 6 9.0432 -0.9491 11.1279 26 6 4.8472 0.6252 5.8881 27 8 5.3235 1.8597 6.1886 28 6 4.1500 0.4172 4.7123 29 8 2.6271 -0.1464 2.2302 30 1 -0.3933 0.4417 0.7651 31 1 1.7923 -0.5138 -0.8900 32 1 1.5615 2.4680 -1.2085 33 1 1.5879 2.4585 1.2243 34 1 1.2451 -2.7429 0.8938 35 1 2.4308 -3.2078 3.2682 36 1 3.4991 -2.9007 5.0581 37 1 4.7384 -2.5432 7.1298 38 1 5.6795 -2.1475 8.6445 39 1 6.5428 -0.0634 10.4990 40 1 8.5583 -0.4142 9.0980 41 1 9.6478 -2.6418 9.0792 42 1 8.0253 -2.7178 8.3508 43 1 8.3918 -4.6117 9.9090 44 1 6.3759 -4.2607 11.3103 45 1 6.1146 -3.6635 9.6538 46 1 5.2865 -2.0335 11.3290 47 1 6.9103 -0.9026 12.8237 48 1 6.8402 -2.6486 13.1611 49 1 9.1493 -2.4388 14.0628 50 1 8.6530 -4.1539 12.3319 51 1 10.0145 -3.4804 11.4035 52 1 8.8203 0.0427 11.5213 53 1 10.1120 -1.0293 10.9300 54 1 6.2164 2.0279 5.8580 55 1 3.9832 1.2371 4.0293 There are 76 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 76 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_15142604_12807986.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 18:01:54 Heat of formation + Delta-G solvation = -117.587995 kcal Electronic energy + Delta-G solvation = -40130.600693 eV Core-core repulsion = 35065.056748 eV Total energy + Delta-G solvation = -5065.543945 eV No. of doubly occupied orbitals = 76 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 412.181 amu Computer time = 2.20 seconds Orbital eigenvalues (eV) -43.74284 -42.87697 -41.36870 -39.60199 -38.21944 -37.90347 -37.54080 -35.39325 -34.26478 -33.76209 -33.67519 -32.89478 -31.41374 -31.06685 -30.28798 -27.38887 -26.98619 -26.36463 -24.43736 -24.04951 -22.97199 -22.63216 -22.44354 -22.23647 -21.65582 -21.18100 -19.87255 -19.14753 -18.61042 -18.41354 -18.01315 -17.67962 -17.51864 -17.15919 -16.65041 -16.33740 -16.25132 -16.10059 -15.89430 -15.82598 -15.59273 -15.34944 -15.19308 -15.02235 -14.73023 -14.45476 -14.45057 -14.37442 -14.25666 -13.97335 -13.80432 -13.64585 -13.55256 -13.52223 -13.47551 -13.31910 -13.01694 -12.96335 -12.72048 -12.50173 -12.20416 -12.04772 -11.95034 -11.90980 -11.76257 -11.50533 -11.23160 -11.13295 -10.91057 -10.85109 -10.75292 -10.62055 -10.44572 -10.04011 -9.95195 -9.01567 -5.00437 -0.79268 0.14341 0.64328 1.11932 1.43313 1.44814 1.69352 1.87573 1.93284 2.02010 2.64394 3.01485 3.15615 3.20761 3.35518 3.39692 3.45109 3.60292 3.66088 3.80836 3.86891 3.90598 3.97416 3.99317 4.00910 4.09779 4.13293 4.17486 4.21621 4.23878 4.27091 4.36653 4.39525 4.43438 4.55390 4.61465 4.64835 4.70375 4.70897 4.77898 4.79880 4.85327 4.90108 4.99612 5.00514 5.02493 5.06629 5.06825 5.10517 5.13319 5.16480 5.21403 5.31688 5.35552 5.39168 5.43550 5.49137 5.51107 5.54337 5.96061 6.30304 6.47845 6.69196 6.87657 7.17824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.534 6.534 2 C -0.032 4.032 3 Si 0.762 3.238 4 C -0.052 4.052 5 C -0.181 4.181 6 C -0.171 4.171 7 C 0.005 3.995 8 C 0.026 3.974 9 C -0.108 4.108 10 C -0.051 4.051 11 C -0.178 4.178 12 C 0.556 3.444 13 O -0.564 6.564 14 N -0.703 5.703 15 C 0.160 3.840 16 C -0.087 4.087 17 C -0.107 4.107 18 C -0.081 4.081 19 C -0.109 4.109 20 C -0.085 4.085 21 C -0.133 4.133 22 C 0.134 3.866 23 O -0.582 6.582 24 C -0.134 4.134 25 C -0.100 4.100 26 C 0.160 3.840 27 O -0.496 6.496 28 C -0.154 4.154 29 O -0.177 6.177 30 H 0.389 0.611 31 H 0.158 0.842 32 H -0.281 1.281 33 H -0.298 1.298 34 H 0.167 0.833 35 H 0.183 0.817 36 H 0.171 0.829 37 H 0.172 0.828 38 H 0.413 0.587 39 H 0.060 0.940 40 H 0.057 0.943 41 H 0.061 0.939 42 H 0.075 0.925 43 H 0.092 0.908 44 H 0.085 0.915 45 H 0.082 0.918 46 H 0.090 0.910 47 H 0.057 0.943 48 H 0.091 0.909 49 H 0.391 0.609 50 H 0.082 0.918 51 H 0.061 0.939 52 H 0.051 0.949 53 H 0.063 0.937 54 H 0.408 0.592 55 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.024 -10.559 -1.049 10.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.343 6.343 2 C -0.142 4.142 3 Si 0.667 3.333 4 C -0.102 4.102 5 C -0.200 4.200 6 C -0.190 4.190 7 C -0.045 4.045 8 C 0.025 3.975 9 C -0.126 4.126 10 C -0.069 4.069 11 C -0.182 4.182 12 C 0.344 3.656 13 O -0.443 6.443 14 N -0.356 5.356 15 C 0.055 3.945 16 C -0.106 4.106 17 C -0.145 4.145 18 C -0.100 4.100 19 C -0.146 4.146 20 C -0.104 4.104 21 C -0.171 4.171 22 C 0.094 3.906 23 O -0.390 6.390 24 C -0.171 4.171 25 C -0.138 4.138 26 C 0.113 3.887 27 O -0.310 6.310 28 C -0.172 4.172 29 O -0.075 6.075 30 H 0.239 0.761 31 H 0.176 0.824 32 H -0.207 1.207 33 H -0.225 1.225 34 H 0.185 0.815 35 H 0.201 0.799 36 H 0.189 0.811 37 H 0.189 0.811 38 H 0.252 0.748 39 H 0.079 0.921 40 H 0.075 0.925 41 H 0.079 0.921 42 H 0.094 0.906 43 H 0.110 0.890 44 H 0.104 0.896 45 H 0.101 0.899 46 H 0.108 0.892 47 H 0.076 0.924 48 H 0.109 0.891 49 H 0.241 0.759 50 H 0.100 0.900 51 H 0.079 0.921 52 H 0.069 0.931 53 H 0.082 0.918 54 H 0.268 0.732 55 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -0.034 -8.382 -1.445 8.506 hybrid contribution -0.858 -0.123 0.598 1.053 sum -0.891 -8.505 -0.847 8.594 Atomic orbital electron populations 1.86638 1.17250 1.80347 1.50037 1.24452 0.83513 1.11883 0.94346 0.93670 0.90523 0.72221 0.76891 1.23152 1.00673 0.94214 0.92150 1.21843 1.04050 0.95680 0.98419 1.22251 1.00809 0.98922 0.96988 1.20590 1.04651 0.87960 0.91263 1.17951 0.95311 0.93915 0.90331 1.21058 0.99215 0.99405 0.92907 1.21155 0.93968 0.95046 0.96741 1.20525 1.05445 0.95377 0.96827 1.18256 0.79243 0.84292 0.83788 1.90827 1.52039 1.25444 1.75983 1.45828 1.56457 1.12221 1.21108 1.20846 0.90393 0.99288 0.83974 1.21299 0.94500 0.98658 0.96181 1.21559 1.01483 0.92768 0.98641 1.21065 0.95209 0.99402 0.94290 1.21647 0.95372 0.95342 1.02277 1.21275 1.00678 0.95039 0.93418 1.22139 0.94461 1.02865 0.97640 1.21087 0.90425 0.94813 0.84271 1.86538 1.67939 1.59574 1.24987 1.22156 1.00625 0.96012 0.98350 1.21371 1.00105 0.98145 0.94170 1.18503 0.94722 0.84146 0.91312 1.84734 1.37286 1.28604 1.80327 1.21565 1.01071 0.97731 0.96843 1.83938 1.57977 1.38660 1.26946 0.76071 0.82440 1.20710 1.22515 0.81510 0.79948 0.81145 0.81093 0.74767 0.92149 0.92487 0.92056 0.90637 0.89008 0.89604 0.89943 0.89166 0.92384 0.89088 0.75932 0.89983 0.92055 0.93057 0.91812 0.73193 0.84558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 -0.34 12.88 -148.98 -1.92 -2.26 16 2 C -0.03 0.06 2.98 71.24 0.21 0.27 16 3 Si 0.76 -0.52 32.11 68.60 2.20 1.68 16 4 C -0.05 -0.02 6.21 24.90 0.15 0.13 16 5 C -0.18 0.18 10.78 22.11 0.24 0.42 16 6 C -0.17 0.41 10.26 22.40 0.23 0.64 16 7 C 0.00 0.00 7.02 24.24 0.17 0.17 16 8 C 0.03 0.00 5.87 -20.08 -0.12 -0.12 16 9 C -0.11 0.64 9.48 22.25 0.21 0.85 16 10 C -0.05 0.31 9.47 22.24 0.21 0.52 16 11 C -0.18 -0.32 5.89 -19.97 -0.12 -0.44 16 12 C 0.56 2.86 7.72 86.62 0.67 3.53 16 13 O -0.56 -8.07 14.80 16.90 0.25 -7.82 16 14 N -0.70 1.45 4.18 -445.93 -1.86 -0.41 16 15 C 0.16 0.05 2.05 44.99 0.09 0.14 16 16 C -0.09 -0.12 2.88 -10.79 -0.03 -0.15 16 17 C -0.11 0.37 5.03 30.60 0.15 0.53 16 18 C -0.08 0.55 3.19 -10.79 -0.03 0.51 16 19 C -0.11 1.01 5.02 30.60 0.15 1.16 16 20 C -0.09 0.42 2.88 -10.79 -0.03 0.39 16 21 C -0.13 0.39 4.81 30.59 0.15 0.54 16 22 C 0.13 -0.06 1.15 -10.84 -0.01 -0.07 16 23 O -0.58 -1.30 12.98 -148.98 -1.93 -3.23 16 24 C -0.13 0.56 4.81 30.57 0.15 0.71 16 25 C -0.10 -0.36 4.84 30.58 0.15 -0.21 16 26 C 0.16 0.81 6.71 22.81 0.15 0.96 16 27 O -0.50 -4.01 11.56 -69.05 -0.80 -4.80 16 28 C -0.15 -0.47 9.65 22.61 0.22 -0.26 16 29 O -0.18 -0.52 8.79 -6.02 -0.05 -0.57 16 30 H 0.39 -1.56 8.70 -74.06 -0.64 -2.20 16 31 H 0.16 -0.94 7.96 -2.39 -0.02 -0.96 16 32 H -0.28 -1.31 7.11 99.48 0.71 -0.61 16 33 H -0.30 -1.91 7.11 99.48 0.71 -1.20 16 34 H 0.17 -0.64 8.06 -2.91 -0.02 -0.66 16 35 H 0.18 -1.60 7.24 -2.91 -0.02 -1.62 16 36 H 0.17 -2.13 6.95 -2.91 -0.02 -2.15 16 37 H 0.17 -2.41 6.38 -2.91 -0.02 -2.43 16 38 H 0.41 -3.73 4.87 -92.71 -0.45 -4.18 16 39 H 0.06 0.42 7.58 -2.39 -0.02 0.41 16 40 H 0.06 0.36 8.14 -2.39 -0.02 0.35 16 41 H 0.06 -0.12 8.14 -2.39 -0.02 -0.14 16 42 H 0.08 -0.40 7.60 -2.39 -0.02 -0.42 16 43 H 0.09 -0.80 8.14 -2.39 -0.02 -0.82 16 44 H 0.09 -0.93 8.14 -2.39 -0.02 -0.95 16 45 H 0.08 -1.05 6.51 -2.39 -0.02 -1.07 16 46 H 0.09 -0.54 8.14 -2.39 -0.02 -0.56 16 47 H 0.06 0.04 8.14 -2.39 -0.02 0.02 16 48 H 0.09 -0.59 8.14 -2.39 -0.02 -0.61 16 49 H 0.39 -2.26 9.04 -74.06 -0.67 -2.93 16 50 H 0.08 -0.57 8.14 -2.39 -0.02 -0.59 16 51 H 0.06 -0.10 8.14 -2.39 -0.02 -0.12 16 52 H 0.05 0.37 8.14 -2.39 -0.02 0.35 16 53 H 0.06 0.32 8.14 -2.39 -0.02 0.30 16 54 H 0.41 0.39 9.06 -74.06 -0.67 -0.28 16 55 H 0.14 0.45 7.90 -2.91 -0.02 0.43 16 Total: 0.00 -27.27 427.63 -2.56 -29.84 By element: Atomic # 1 Polarization: -21.24 SS G_CDS: -1.41 Total: -22.65 kcal Atomic # 6 Polarization: 7.26 SS G_CDS: 2.96 Total: 10.23 kcal Atomic # 7 Polarization: 1.45 SS G_CDS: -1.86 Total: -0.41 kcal Atomic # 8 Polarization: -14.23 SS G_CDS: -4.45 Total: -18.68 kcal Atomic # 14 Polarization: -0.52 SS G_CDS: 2.20 Total: 1.68 kcal Total: -27.27 -2.56 -29.84 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_15142604_12807986.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.751 kcal (2) G-P(sol) polarization free energy of solvation -27.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.20 seconds