Wall clock time and date at job start Thu Mar 4 2021 18:02:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 C 1.39285 * 121.03168 * 2 1 4 4 C 1.46497 * 134.20087 * 0.02562 * 3 2 1 5 5 C 1.50703 * 126.59751 * 0.03906 * 4 3 2 6 6 O 1.42897 * 109.47317 * 75.00266 * 5 4 3 7 7 Si 1.86298 * 109.47198 * 195.00389 * 5 4 3 8 8 C 1.34177 * 106.80489 * 180.02562 * 4 3 2 9 9 N 1.36951 * 109.95064 * 359.97438 * 8 4 3 10 10 C 1.37155 * 110.11214 * 359.97438 * 9 8 4 11 11 N 1.32822 * 132.96167 * 180.02562 * 10 9 8 12 12 C 1.31310 * 121.88591 * 179.74784 * 11 10 9 13 13 C 1.39757 * 121.03387 * 180.02562 * 2 1 3 14 14 C 1.47661 * 120.45022 * 359.97438 * 13 2 1 15 15 O 1.21573 * 120.00122 * 354.30635 * 14 13 2 16 16 N 1.34775 * 120.00019 * 174.29677 * 14 13 2 17 17 C 1.46501 * 120.00414 * 180.02562 * 16 14 13 18 18 C 1.53004 * 109.46838 * 275.00478 * 17 16 14 19 19 C 1.53003 * 109.46866 * 299.99511 * 18 17 16 20 20 C 1.52997 * 109.47382 * 300.00059 * 19 18 17 21 21 C 1.53004 * 109.46657 * 60.00275 * 20 19 18 22 22 C 1.52997 * 109.47485 * 155.00373 * 17 16 14 23 23 C 1.52998 * 109.47102 * 179.97438 * 22 17 16 24 24 C 1.52992 * 109.47128 * 299.99676 * 23 22 17 25 25 O 1.42903 * 109.47091 * 180.02562 * 24 23 22 26 26 C 1.52998 * 109.47102 * 300.00184 * 20 19 18 27 27 C 1.52998 * 109.47006 * 180.02562 * 18 17 16 28 28 H 1.08999 * 109.47643 * 263.68993 * 1 2 3 29 29 H 1.09003 * 109.47399 * 23.68950 * 1 2 3 30 30 H 1.09002 * 109.47036 * 143.69163 * 1 2 3 31 31 H 1.09001 * 109.46778 * 315.00387 * 5 4 3 32 32 H 0.96695 * 113.99965 * 59.99685 * 6 5 4 33 33 H 1.48505 * 110.00093 * 58.67945 * 7 5 4 34 34 H 1.48495 * 110.00050 * 179.97438 * 7 5 4 35 35 H 1.07997 * 125.02660 * 180.02562 * 8 4 3 36 36 H 0.97000 * 124.94255 * 180.02562 * 9 8 4 37 37 H 1.08007 * 119.30773 * 180.26762 * 12 11 10 38 38 H 0.97001 * 119.99676 * 0.28399 * 16 14 13 39 39 H 1.08992 * 109.46834 * 35.00008 * 17 16 14 40 40 H 1.09000 * 109.47161 * 59.99887 * 18 17 16 41 41 H 1.09002 * 109.46686 * 180.02562 * 19 18 17 42 42 H 1.09002 * 109.46723 * 60.00698 * 19 18 17 43 43 H 1.09001 * 109.46823 * 180.02562 * 20 19 18 44 44 H 1.09004 * 109.46484 * 180.02562 * 21 20 19 45 45 H 1.08992 * 109.47429 * 60.00033 * 21 20 19 46 46 H 1.09002 * 109.47210 * 300.00097 * 22 17 16 47 47 H 1.09001 * 109.47270 * 60.00287 * 23 22 17 48 48 H 1.09000 * 109.46954 * 180.02562 * 23 22 17 49 49 H 0.96690 * 114.00199 * 60.00186 * 25 24 23 50 50 H 1.09000 * 109.46954 * 180.02562 * 26 20 19 51 51 H 1.09001 * 109.47209 * 299.99593 * 26 20 19 52 52 H 1.09009 * 109.46857 * 299.99719 * 27 18 17 53 53 H 1.09002 * 109.47143 * 180.02562 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2249 1.1935 0.0000 4 6 1.8515 2.6101 0.0005 5 6 0.4526 3.1705 0.0020 6 8 -0.1179 3.0239 1.3039 7 14 0.5065 4.9763 -0.4527 8 6 2.9947 3.3126 -0.0004 9 7 4.0668 2.4605 -0.0008 10 6 3.6347 1.1588 0.0004 11 7 4.2720 -0.0066 0.0010 12 6 3.6266 -1.1501 0.0070 13 6 2.2274 -1.1975 -0.0005 14 6 1.5225 -2.4950 -0.0005 15 8 0.3118 -2.5290 0.1044 16 7 2.2212 -3.6416 -0.1171 17 6 1.5219 -4.9289 -0.1176 18 6 1.2939 -5.3860 1.3246 19 6 2.6428 -5.5388 2.0304 20 6 3.4891 -6.5787 1.2935 21 6 3.7171 -6.1215 -0.1487 22 6 2.3682 -5.9688 -0.8545 23 6 1.6380 -7.3133 -0.8545 24 6 1.4107 -7.7702 0.5878 25 8 0.7292 -9.0263 0.5878 26 6 2.7587 -7.9231 1.2930 27 6 0.5641 -6.7307 1.3240 28 1 -0.3634 -0.1129 1.0214 29 1 -0.3634 0.9411 -0.4129 30 1 -0.3633 -0.8282 -0.6085 31 1 -0.1557 2.6310 -0.7241 32 1 0.3726 3.4793 2.0018 33 1 1.1269 5.1448 -1.7914 34 1 -0.8671 5.5406 -0.4554 35 1 3.0597 4.3906 0.0001 36 1 4.9965 2.7373 -0.0010 37 1 4.1869 -2.0734 0.0117 38 1 3.1876 -3.6146 -0.1968 39 1 0.5610 -4.8200 -0.6204 40 1 0.6909 -4.6451 1.8496 41 1 2.4803 -5.8649 3.0577 42 1 3.1631 -4.5809 2.0308 43 1 4.4499 -6.6878 1.7967 44 1 4.3197 -6.8626 -0.6738 45 1 4.2374 -5.1638 -0.1483 46 1 2.5307 -5.6432 -1.8820 47 1 0.6769 -7.2049 -1.3572 48 1 2.2412 -8.0543 -1.3791 49 1 1.2092 -9.7341 0.1366 50 1 3.3618 -8.6641 0.7684 51 1 2.5963 -8.2488 2.3204 52 1 -0.3969 -6.6223 0.8210 53 1 0.4012 -7.0562 2.3515 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_15142604_12890568.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 18:02:00 Heat of formation + Delta-G solvation = -51.274260 kcal Electronic energy + Delta-G solvation = -37349.487805 eV Core-core repulsion = 32766.020523 eV Total energy + Delta-G solvation = -4583.467282 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 384.188 amu Computer time = 1.84 seconds Orbital eigenvalues (eV) -42.98357 -42.72152 -40.71299 -38.76821 -37.76513 -37.57137 -35.63736 -34.91201 -33.75821 -33.25186 -31.97590 -31.61324 -30.43694 -28.96380 -26.98926 -26.90889 -26.24636 -24.66654 -23.93671 -22.93121 -22.53856 -22.31396 -21.46061 -20.63344 -19.31354 -19.24322 -18.42577 -18.01134 -17.61887 -17.46136 -16.99678 -16.61369 -16.52303 -16.07120 -15.88977 -15.69333 -15.60587 -15.38422 -15.29713 -15.22839 -14.87693 -14.65403 -14.53383 -14.35151 -14.14758 -13.97509 -13.79395 -13.69491 -13.58280 -13.50488 -13.37140 -13.31180 -13.11982 -12.95684 -12.51119 -12.30628 -12.04901 -12.00969 -11.95094 -11.77739 -11.50657 -11.26505 -11.19754 -11.15786 -10.75046 -10.54575 -10.44411 -10.20099 -10.06660 -9.62770 -9.11313 -4.99112 -0.36300 -0.09277 1.34764 1.42892 1.65484 1.74591 1.79113 2.01622 2.05443 2.73845 3.15345 3.28711 3.40371 3.44695 3.46770 3.60471 3.61580 3.70562 3.76097 3.80477 3.90113 3.97225 4.09467 4.13129 4.13743 4.16682 4.22180 4.26205 4.27232 4.31087 4.34146 4.39042 4.56579 4.57890 4.61097 4.67621 4.70830 4.77276 4.77997 4.85621 4.96352 4.99967 5.01303 5.01788 5.06069 5.12084 5.15700 5.16706 5.22090 5.30347 5.32684 5.37366 5.42387 5.48505 5.52157 5.72717 6.22972 6.45350 6.81706 6.87908 6.88197 7.15338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C 0.060 3.940 3 C -0.168 4.168 4 C -0.207 4.207 5 C -0.051 4.051 6 O -0.558 6.558 7 Si 0.805 3.195 8 C 0.097 3.903 9 N -0.559 5.559 10 C 0.289 3.711 11 N -0.513 5.513 12 C 0.180 3.820 13 C -0.240 4.240 14 C 0.570 3.430 15 O -0.566 6.566 16 N -0.704 5.704 17 C 0.161 3.839 18 C -0.087 4.087 19 C -0.108 4.108 20 C -0.081 4.081 21 C -0.110 4.110 22 C -0.085 4.085 23 C -0.132 4.132 24 C 0.135 3.865 25 O -0.581 6.581 26 C -0.133 4.133 27 C -0.099 4.099 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.080 0.920 31 H 0.095 0.905 32 H 0.394 0.606 33 H -0.280 1.280 34 H -0.306 1.306 35 H 0.232 0.768 36 H 0.439 0.561 37 H 0.193 0.807 38 H 0.411 0.589 39 H 0.066 0.934 40 H 0.056 0.944 41 H 0.060 0.940 42 H 0.072 0.928 43 H 0.090 0.910 44 H 0.086 0.914 45 H 0.079 0.921 46 H 0.091 0.909 47 H 0.060 0.940 48 H 0.091 0.909 49 H 0.391 0.609 50 H 0.082 0.918 51 H 0.060 0.940 52 H 0.053 0.947 53 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.311 3.376 -0.290 9.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.051 3.949 3 C -0.175 4.175 4 C -0.214 4.214 5 C -0.159 4.159 6 O -0.366 6.366 7 Si 0.709 3.291 8 C -0.030 4.030 9 N -0.166 5.166 10 C 0.055 3.945 11 N -0.227 5.227 12 C 0.011 3.989 13 C -0.247 4.247 14 C 0.359 3.641 15 O -0.446 6.446 16 N -0.356 5.356 17 C 0.056 3.944 18 C -0.107 4.107 19 C -0.146 4.146 20 C -0.100 4.100 21 C -0.148 4.148 22 C -0.104 4.104 23 C -0.170 4.170 24 C 0.095 3.905 25 O -0.390 6.390 26 C -0.171 4.171 27 C -0.137 4.137 28 H 0.091 0.909 29 H 0.088 0.912 30 H 0.099 0.901 31 H 0.112 0.888 32 H 0.244 0.756 33 H -0.206 1.206 34 H -0.234 1.234 35 H 0.248 0.752 36 H 0.281 0.719 37 H 0.209 0.791 38 H 0.250 0.750 39 H 0.084 0.916 40 H 0.075 0.925 41 H 0.079 0.921 42 H 0.090 0.910 43 H 0.108 0.892 44 H 0.104 0.896 45 H 0.097 0.903 46 H 0.109 0.891 47 H 0.079 0.921 48 H 0.109 0.891 49 H 0.241 0.759 50 H 0.101 0.899 51 H 0.079 0.921 52 H 0.072 0.928 53 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 8.394 4.107 -0.787 9.378 hybrid contribution -0.397 -1.086 -0.394 1.221 sum 7.997 3.022 -1.181 8.630 Atomic orbital electron populations 1.20969 0.89666 1.02893 1.03104 1.20043 0.96848 0.90358 0.87615 1.19787 0.93425 0.94489 1.09784 1.20805 0.96364 0.90299 1.13965 1.24803 0.89937 1.12475 0.88719 1.86496 1.54461 1.78671 1.16923 0.94069 0.80622 0.72478 0.81922 1.22398 0.83616 0.97375 0.99604 1.41620 1.10718 1.01623 1.62654 1.18766 0.89388 0.86951 0.99416 1.66516 1.40740 0.96432 1.18969 1.22914 0.89550 0.95317 0.91089 1.20494 0.95505 0.93239 1.15510 1.18027 0.86471 0.84016 0.75631 1.90747 1.15176 1.87535 1.51151 1.45819 1.11120 1.04582 1.74103 1.20870 0.96006 0.82046 0.95478 1.21302 0.97426 0.95672 0.96291 1.21565 0.94476 0.99771 0.98789 1.21056 0.98900 0.93574 0.96427 1.21649 0.95506 1.02838 0.94766 1.21272 0.95527 0.93541 1.00037 1.22133 1.01110 0.97329 0.96418 1.21071 0.91503 0.83526 0.94445 1.86536 1.50599 1.20745 1.81083 1.22151 0.95512 0.98309 1.01140 1.21363 0.98172 0.93553 1.00634 0.90930 0.91189 0.90135 0.88807 0.75636 1.20638 1.23440 0.75195 0.71905 0.79086 0.75021 0.91569 0.92516 0.92108 0.90965 0.89220 0.89584 0.90255 0.89073 0.92119 0.89088 0.75920 0.89945 0.92084 0.92799 0.91882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.13 8.69 71.23 0.62 -0.51 16 2 C 0.06 0.53 5.98 -19.25 -0.12 0.41 16 3 C -0.17 -1.02 6.16 -20.19 -0.12 -1.15 16 4 C -0.21 -0.01 5.57 -18.64 -0.10 -0.12 16 5 C -0.05 0.01 2.06 71.24 0.15 0.16 16 6 O -0.56 -0.59 12.88 -148.98 -1.92 -2.51 16 7 Si 0.80 -4.13 30.77 68.60 2.11 -2.02 16 8 C 0.10 -0.65 10.44 82.97 0.87 0.22 16 9 N -0.56 2.20 6.04 -192.25 -1.16 1.04 16 10 C 0.29 1.15 8.42 134.02 1.13 2.28 16 11 N -0.51 -2.34 10.37 -191.75 -1.99 -4.32 16 12 C 0.18 0.35 10.67 85.20 0.91 1.26 16 13 C -0.24 -1.49 5.89 -19.99 -0.12 -1.61 16 14 C 0.57 4.07 7.69 86.73 0.67 4.74 16 15 O -0.57 -8.25 13.15 -3.95 -0.05 -8.30 16 16 N -0.70 -0.03 4.18 -445.59 -1.86 -1.90 16 17 C 0.16 0.23 2.05 44.99 0.09 0.32 16 18 C -0.09 -0.25 2.88 -10.79 -0.03 -0.28 16 19 C -0.11 0.14 5.03 30.59 0.15 0.29 16 20 C -0.08 0.39 3.19 -10.79 -0.03 0.36 16 21 C -0.11 0.80 5.02 30.60 0.15 0.95 16 22 C -0.08 0.32 2.88 -10.80 -0.03 0.29 16 23 C -0.13 0.30 4.81 30.59 0.15 0.44 16 24 C 0.13 0.06 1.15 -10.85 -0.01 0.04 16 25 O -0.58 -1.65 12.98 -148.98 -1.93 -3.58 16 26 C -0.13 0.38 4.81 30.56 0.15 0.53 16 27 C -0.10 -0.45 4.84 30.58 0.15 -0.30 16 28 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.07 0.60 5.05 -2.39 -0.01 0.59 16 30 H 0.08 1.05 5.95 -2.39 -0.01 1.04 16 31 H 0.09 0.32 6.05 -2.39 -0.01 0.30 16 32 H 0.39 -3.07 8.70 -74.06 -0.64 -3.71 16 33 H -0.28 0.26 7.11 99.48 0.71 0.97 16 34 H -0.31 -1.18 7.11 99.48 0.71 -0.47 16 35 H 0.23 -3.86 6.36 -2.91 -0.02 -3.88 16 36 H 0.44 -4.25 8.96 -92.71 -0.83 -5.09 16 37 H 0.19 -1.20 6.43 -2.91 -0.02 -1.22 16 38 H 0.41 -2.45 4.94 -92.71 -0.46 -2.90 16 39 H 0.07 0.47 7.58 -2.39 -0.02 0.45 16 40 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 41 H 0.06 0.01 8.14 -2.39 -0.02 -0.01 16 42 H 0.07 -0.17 7.60 -2.39 -0.02 -0.19 16 43 H 0.09 -0.58 8.14 -2.39 -0.02 -0.60 16 44 H 0.09 -0.78 8.14 -2.38 -0.02 -0.80 16 45 H 0.08 -0.79 6.50 -2.39 -0.02 -0.81 16 46 H 0.09 -0.45 8.14 -2.39 -0.02 -0.47 16 47 H 0.06 0.05 8.14 -2.39 -0.02 0.03 16 48 H 0.09 -0.52 8.14 -2.39 -0.02 -0.54 16 49 H 0.39 -2.04 9.04 -74.06 -0.67 -2.71 16 50 H 0.08 -0.48 8.14 -2.39 -0.02 -0.50 16 51 H 0.06 -0.02 8.14 -2.39 -0.02 -0.04 16 52 H 0.05 0.41 8.14 -2.38 -0.02 0.40 16 53 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 Total: 0.00 -27.97 393.67 -3.75 -31.72 By element: Atomic # 1 Polarization: -16.92 SS G_CDS: -1.55 Total: -18.47 kcal Atomic # 6 Polarization: 3.72 SS G_CDS: 4.61 Total: 8.33 kcal Atomic # 7 Polarization: -0.17 SS G_CDS: -5.01 Total: -5.18 kcal Atomic # 8 Polarization: -10.48 SS G_CDS: -3.90 Total: -14.39 kcal Atomic # 14 Polarization: -4.13 SS G_CDS: 2.11 Total: -2.02 kcal Total: -27.97 -3.75 -31.72 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_15142604_12890568.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.552 kcal (2) G-P(sol) polarization free energy of solvation -27.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.85 seconds