Wall clock time and date at job start Thu Mar 4 2021 18:02:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42907 * 1 3 3 Si 1.86295 * 109.47262 * 2 1 4 4 C 1.50700 * 109.46815 * 239.99560 * 2 1 3 5 5 C 1.33745 * 125.12282 * 300.02271 * 4 2 1 6 6 C 1.37794 * 115.08024 * 179.73140 * 5 4 2 7 7 C 1.34981 * 114.70464 * 0.50483 * 6 5 4 8 8 C 1.47558 * 125.27852 * 179.79188 * 7 6 5 9 9 C 1.39822 * 119.99567 * 179.71923 * 8 7 6 10 10 C 1.36565 * 119.99708 * 179.97438 * 9 8 7 11 11 C 1.39827 * 120.00285 * 0.02562 * 10 9 8 12 12 C 1.47558 * 120.00573 * 180.02562 * 11 10 9 13 13 O 1.21592 * 119.99641 * 359.97438 * 12 11 10 14 14 N 1.34773 * 120.00041 * 180.02562 * 12 11 10 15 15 C 1.46499 * 120.00031 * 179.97438 * 14 12 11 16 16 C 1.52997 * 109.47695 * 204.99801 * 15 14 12 17 17 C 1.52997 * 109.47457 * 179.97438 * 16 15 14 18 18 C 1.53002 * 109.46817 * 60.00169 * 17 16 15 19 19 C 1.52996 * 109.47346 * 299.99737 * 18 17 16 20 20 C 1.53002 * 109.46891 * 59.99997 * 19 18 17 21 21 C 1.52997 * 109.46978 * 60.00410 * 20 19 18 22 22 C 1.53006 * 109.47164 * 299.99874 * 21 20 19 23 23 O 1.42895 * 109.47000 * 180.02562 * 22 21 20 24 24 C 1.52997 * 109.47127 * 59.99836 * 22 21 20 25 25 C 1.52999 * 109.46623 * 299.99900 * 22 21 20 26 26 C 1.39837 * 119.99711 * 0.27251 * 11 10 9 27 27 C 1.36575 * 119.99209 * 359.40003 * 26 11 10 28 28 S 1.75860 * 125.11562 * 120.02854 * 4 2 1 29 29 H 0.96699 * 114.00021 * 299.99898 * 1 2 3 30 30 H 1.09005 * 109.46717 * 120.00271 * 2 1 3 31 31 H 1.48500 * 109.99697 * 299.99871 * 3 2 1 32 32 H 1.48494 * 110.00140 * 61.31710 * 3 2 1 33 33 H 1.08004 * 122.45557 * 359.97438 * 5 4 2 34 34 H 1.08004 * 122.65166 * 180.29588 * 6 5 4 35 35 H 1.07999 * 120.00277 * 0.02562 * 9 8 7 36 36 H 1.08004 * 119.99718 * 180.02562 * 10 9 8 37 37 H 0.96998 * 120.00452 * 359.97438 * 14 12 11 38 38 H 1.09004 * 109.47041 * 324.99924 * 15 14 12 39 39 H 1.09001 * 109.46989 * 59.99548 * 16 15 14 40 40 H 1.08993 * 109.47194 * 299.99651 * 17 16 15 41 41 H 1.09002 * 109.46695 * 179.97438 * 17 16 15 42 42 H 1.09004 * 109.46733 * 179.97438 * 18 17 16 43 43 H 1.08992 * 109.47554 * 180.02562 * 19 18 17 44 44 H 1.09004 * 109.47108 * 300.00289 * 19 18 17 45 45 H 1.09002 * 109.47097 * 180.02562 * 20 19 18 46 46 H 1.09000 * 109.47140 * 179.97438 * 21 20 19 47 47 H 1.09001 * 109.47375 * 59.99908 * 21 20 19 48 48 H 0.96696 * 114.00485 * 299.99339 * 23 22 21 49 49 H 1.09002 * 109.47153 * 180.02562 * 24 22 21 50 50 H 1.09001 * 109.46832 * 60.00321 * 24 22 21 51 51 H 1.09000 * 109.47486 * 299.99829 * 25 22 21 52 52 H 1.09002 * 109.46716 * 179.97438 * 25 22 21 53 53 H 1.07994 * 120.00451 * 179.72208 * 26 11 10 54 54 H 1.07997 * 119.99286 * 180.32017 * 27 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7105 -1.2304 5 6 1.6717 -1.9847 -1.5430 6 6 2.2325 -2.4226 -2.7231 7 6 2.9673 -1.4974 -3.3759 8 6 3.6727 -1.7157 -4.6534 9 6 4.3999 -0.6739 -5.2373 10 6 5.0533 -0.8761 -6.4193 11 6 4.9945 -2.1247 -7.0461 12 6 5.7008 -2.3434 -8.3230 13 8 6.3337 -1.4376 -8.8305 14 7 5.6437 -3.5467 -8.9272 15 6 6.3445 -3.7636 -10.1953 16 6 5.6663 -4.8984 -10.9654 17 6 6.3978 -5.1245 -12.2900 18 6 7.8551 -5.4976 -12.0104 19 6 8.5335 -4.3628 -11.2405 20 6 7.8018 -4.1367 -9.9159 21 6 7.8492 -5.4185 -9.0818 22 6 7.1709 -6.5534 -9.8519 23 8 7.2146 -7.7504 -9.0726 24 6 7.9024 -6.7795 -11.1764 25 6 5.7136 -6.1802 -10.1312 26 6 4.2620 -3.1647 -6.4653 27 6 3.6142 -2.9643 -5.2797 28 16 2.9472 0.0111 -2.4714 29 1 -0.3933 0.4417 0.7650 30 1 1.7923 -0.5139 0.8900 31 1 1.5616 2.4678 -1.2085 32 1 1.5880 2.4585 1.2242 33 1 1.0638 -2.6225 -0.9184 34 1 2.0977 -3.4277 -3.0946 35 1 4.4457 0.2903 -4.7530 36 1 5.6153 -0.0715 -6.8701 37 1 5.1386 -4.2692 -8.5226 38 1 6.3112 -2.8505 -10.7897 39 1 4.6282 -4.6325 -11.1648 40 1 6.3640 -4.2114 -12.8841 41 1 5.9148 -5.9333 -12.8383 42 1 8.3762 -5.6591 -12.9541 43 1 9.5717 -4.6284 -11.0417 44 1 8.4998 -3.4496 -11.8347 45 1 8.2848 -3.3279 -9.3675 46 1 7.3284 -5.2573 -8.1380 47 1 8.8874 -5.6843 -8.8827 48 1 8.1094 -8.0469 -8.8570 49 1 7.4189 -7.5877 -11.7252 50 1 8.9406 -7.0453 -10.9773 51 1 5.1924 -6.0192 -9.1876 52 1 5.2305 -6.9885 -10.6802 53 1 4.2129 -4.1277 -6.9515 54 1 3.0528 -3.7691 -4.8286 There are 73 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 73 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_15142604_13308390.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 18:02:58 Heat of formation + Delta-G solvation = -60.859051 kcal Electronic energy + Delta-G solvation = -36826.642833 eV Core-core repulsion = 32206.311711 eV Total energy + Delta-G solvation = -4620.331123 eV No. of doubly occupied orbitals = 73 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 412.154 amu Computer time = 2.06 seconds Orbital eigenvalues (eV) -42.88485 -41.15734 -39.81230 -38.94668 -37.56610 -37.44186 -35.84710 -33.77080 -33.73284 -32.61225 -32.10085 -31.49315 -30.45806 -27.55072 -26.98388 -26.42242 -24.62653 -23.99045 -23.37396 -22.87776 -22.45473 -22.30843 -21.21776 -20.10322 -19.51564 -18.70276 -18.52683 -18.31165 -17.89301 -17.09631 -16.98900 -16.29498 -16.25137 -16.12773 -15.89017 -15.63311 -15.60645 -15.36004 -15.27665 -15.00216 -14.87949 -14.66870 -14.56802 -14.46280 -14.22546 -14.19118 -14.09706 -13.68481 -13.53270 -13.38696 -13.34401 -13.29766 -13.10489 -13.00256 -12.75476 -12.40325 -12.18536 -12.17211 -12.04420 -11.93487 -11.89193 -11.61199 -11.59506 -11.24303 -11.09745 -10.85241 -10.78022 -10.51195 -10.43862 -10.20540 -10.06791 -9.55854 -9.02915 -5.10398 -0.89880 0.23027 0.32271 0.37189 0.74861 1.16765 1.50973 1.56319 1.83679 1.95535 2.02674 2.81592 3.11662 3.30266 3.38883 3.43027 3.46815 3.67655 3.67822 3.75959 3.80737 3.83245 3.89231 3.97420 4.09736 4.15241 4.17062 4.18660 4.22684 4.25717 4.30550 4.31588 4.36580 4.45896 4.54142 4.57438 4.61107 4.67176 4.68729 4.70483 4.90671 4.92809 4.97536 4.99745 5.00997 5.02330 5.05739 5.09188 5.11073 5.16268 5.21109 5.27031 5.28863 5.30979 5.33595 5.40586 5.47136 5.47547 5.48617 5.71770 6.41548 6.51524 6.85028 7.09763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.552 6.552 2 C -0.037 4.037 3 Si 0.703 3.297 4 C -0.183 4.183 5 C -0.113 4.113 6 C -0.115 4.115 7 C -0.161 4.161 8 C 0.008 3.992 9 C -0.128 4.128 10 C -0.062 4.062 11 C -0.151 4.151 12 C 0.558 3.442 13 O -0.577 6.577 14 N -0.706 5.706 15 C 0.156 3.844 16 C -0.084 4.084 17 C -0.109 4.109 18 C -0.083 4.083 19 C -0.108 4.108 20 C -0.090 4.090 21 C -0.131 4.131 22 C 0.137 3.863 23 O -0.575 6.575 24 C -0.135 4.135 25 C -0.100 4.100 26 C -0.069 4.069 27 C -0.108 4.108 28 S 0.123 5.877 29 H 0.399 0.601 30 H 0.113 0.887 31 H -0.284 1.284 32 H -0.252 1.252 33 H 0.155 0.845 34 H 0.168 0.832 35 H 0.134 0.866 36 H 0.130 0.870 37 H 0.410 0.590 38 H 0.074 0.926 39 H 0.093 0.907 40 H 0.071 0.929 41 H 0.081 0.919 42 H 0.085 0.915 43 H 0.070 0.930 44 H 0.064 0.936 45 H 0.055 0.945 46 H 0.063 0.937 47 H 0.069 0.931 48 H 0.389 0.611 49 H 0.071 0.929 50 H 0.071 0.929 51 H 0.070 0.930 52 H 0.077 0.923 53 H 0.156 0.844 54 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.536 -4.959 2.263 5.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.363 6.363 2 C -0.149 4.149 3 Si 0.606 3.394 4 C -0.301 4.301 5 C -0.143 4.143 6 C -0.146 4.146 7 C -0.278 4.278 8 C 0.006 3.994 9 C -0.147 4.147 10 C -0.081 4.081 11 C -0.154 4.154 12 C 0.347 3.653 13 O -0.458 6.458 14 N -0.358 5.358 15 C 0.052 3.948 16 C -0.102 4.102 17 C -0.147 4.147 18 C -0.102 4.102 19 C -0.146 4.146 20 C -0.110 4.110 21 C -0.168 4.168 22 C 0.097 3.903 23 O -0.383 6.383 24 C -0.172 4.172 25 C -0.138 4.138 26 C -0.088 4.088 27 C -0.128 4.128 28 S 0.390 5.610 29 H 0.250 0.750 30 H 0.130 0.870 31 H -0.211 1.211 32 H -0.176 1.176 33 H 0.173 0.827 34 H 0.185 0.815 35 H 0.152 0.848 36 H 0.148 0.852 37 H 0.249 0.751 38 H 0.092 0.908 39 H 0.111 0.889 40 H 0.090 0.910 41 H 0.099 0.901 42 H 0.103 0.897 43 H 0.089 0.911 44 H 0.083 0.917 45 H 0.073 0.927 46 H 0.082 0.918 47 H 0.088 0.912 48 H 0.238 0.762 49 H 0.090 0.910 50 H 0.089 0.911 51 H 0.089 0.911 52 H 0.096 0.904 53 H 0.174 0.826 54 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 0.840 -2.281 1.134 2.682 hybrid contribution -1.162 -1.261 0.992 1.981 sum -0.322 -3.543 2.125 4.144 Atomic orbital electron populations 1.86556 1.17901 1.80489 1.51388 1.24126 0.84189 1.10041 0.96558 0.94570 0.91064 0.74160 0.79650 1.24089 1.06554 0.98248 1.01182 1.20199 1.01175 0.95114 0.97839 1.20632 0.97656 1.01402 0.94869 1.23159 1.06859 0.98092 0.99715 1.18437 0.95056 0.94596 0.91293 1.21038 0.98270 0.99300 0.96078 1.20935 0.96606 0.96457 0.94094 1.20035 1.02972 0.96216 0.96177 1.18451 0.79843 0.82432 0.84580 1.90775 1.44446 1.43888 1.66680 1.45949 1.52781 1.12867 1.24217 1.20968 0.91190 0.98603 0.84080 1.21304 1.00592 0.93030 0.95319 1.21581 0.94854 1.02634 0.95633 1.21061 0.96262 0.94029 0.98824 1.21550 0.99238 0.98870 0.94931 1.21325 0.95412 0.97114 0.97154 1.22125 1.01365 0.94718 0.98640 1.21057 0.95777 0.83707 0.89750 1.86507 1.34745 1.42990 1.74080 1.22176 1.01004 0.97969 0.96077 1.21455 0.94647 0.97286 1.00416 1.21210 0.94075 0.98514 0.94986 1.21174 0.99968 0.96436 0.95181 1.84155 1.48862 1.13064 1.14917 0.74969 0.86979 1.21070 1.17612 0.82711 0.81461 0.84788 0.85169 0.75115 0.90774 0.88902 0.91044 0.90059 0.89710 0.91100 0.91718 0.92658 0.91791 0.91192 0.76152 0.91030 0.91069 0.91095 0.90411 0.82635 0.82247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -0.61 12.83 -148.98 -1.91 -2.52 16 2 C -0.04 0.04 2.95 71.24 0.21 0.25 16 3 Si 0.70 -0.59 30.96 68.60 2.12 1.53 16 4 C -0.18 -0.39 5.76 24.66 0.14 -0.25 16 5 C -0.11 -0.12 10.00 21.14 0.21 0.09 16 6 C -0.12 0.01 9.64 21.42 0.21 0.22 16 7 C -0.16 -0.35 6.37 23.98 0.15 -0.20 16 8 C 0.01 0.02 5.88 -20.05 -0.12 -0.10 16 9 C -0.13 -0.44 9.54 22.26 0.21 -0.22 16 10 C -0.06 -0.33 9.53 22.26 0.21 -0.12 16 11 C -0.15 -0.57 5.88 -20.05 -0.12 -0.69 16 12 C 0.56 3.72 7.73 86.70 0.67 4.39 16 13 O -0.58 -8.53 15.99 -4.01 -0.06 -8.59 16 14 N -0.71 -0.33 4.18 -445.68 -1.86 -2.19 16 15 C 0.16 0.12 2.05 44.99 0.09 0.21 16 16 C -0.08 0.27 2.88 -10.79 -0.03 0.24 16 17 C -0.11 0.43 5.19 30.59 0.16 0.59 16 18 C -0.08 0.29 3.19 -10.79 -0.03 0.26 16 19 C -0.11 0.13 5.19 30.59 0.16 0.29 16 20 C -0.09 -0.09 2.88 -10.79 -0.03 -0.12 16 21 C -0.13 0.15 4.66 30.60 0.14 0.29 16 22 C 0.14 -0.32 1.15 -10.79 -0.01 -0.33 16 23 O -0.58 0.37 12.98 -148.98 -1.93 -1.56 16 24 C -0.13 0.46 4.82 30.59 0.15 0.61 16 25 C -0.10 0.31 4.67 30.60 0.14 0.45 16 26 C -0.07 0.13 9.48 22.27 0.21 0.34 16 27 C -0.11 0.20 9.48 22.26 0.21 0.41 16 28 S 0.12 0.31 19.46 -56.49 -1.10 -0.79 16 29 H 0.40 -2.92 8.74 -74.06 -0.65 -3.57 16 30 H 0.11 -0.67 7.96 -2.38 -0.02 -0.69 16 31 H -0.28 -2.01 7.11 99.48 0.71 -1.30 16 32 H -0.25 -0.32 7.11 99.48 0.71 0.39 16 33 H 0.16 -0.23 8.06 -2.91 -0.02 -0.25 16 34 H 0.17 -0.91 6.88 -2.91 -0.02 -0.93 16 35 H 0.13 0.22 7.26 -2.91 -0.02 0.20 16 36 H 0.13 0.86 7.64 -2.91 -0.02 0.84 16 37 H 0.41 -1.80 4.88 -92.71 -0.45 -2.25 16 38 H 0.07 0.38 7.58 -2.38 -0.02 0.37 16 39 H 0.09 -0.41 8.14 -2.39 -0.02 -0.43 16 40 H 0.07 -0.26 8.14 -2.39 -0.02 -0.28 16 41 H 0.08 -0.42 8.14 -2.39 -0.02 -0.44 16 42 H 0.08 -0.38 8.14 -2.39 -0.02 -0.40 16 43 H 0.07 -0.12 8.14 -2.39 -0.02 -0.14 16 44 H 0.06 -0.01 8.14 -2.38 -0.02 -0.02 16 45 H 0.05 0.34 8.14 -2.39 -0.02 0.32 16 46 H 0.06 0.01 7.61 -2.39 -0.02 -0.01 16 47 H 0.07 -0.12 8.14 -2.39 -0.02 -0.14 16 48 H 0.39 -2.62 9.05 -74.06 -0.67 -3.29 16 49 H 0.07 -0.20 8.14 -2.39 -0.02 -0.22 16 50 H 0.07 -0.31 8.14 -2.39 -0.02 -0.32 16 51 H 0.07 -0.30 6.51 -2.39 -0.02 -0.31 16 52 H 0.08 -0.20 8.14 -2.39 -0.02 -0.22 16 53 H 0.16 -1.27 6.38 -2.91 -0.02 -1.29 16 54 H 0.16 -1.17 6.74 -2.91 -0.02 -1.19 16 Total: 0.00 -20.51 424.38 -2.58 -23.09 By element: Atomic # 1 Polarization: -14.82 SS G_CDS: -0.77 Total: -15.59 kcal Atomic # 6 Polarization: 3.68 SS G_CDS: 2.94 Total: 6.61 kcal Atomic # 7 Polarization: -0.33 SS G_CDS: -1.86 Total: -2.19 kcal Atomic # 8 Polarization: -8.76 SS G_CDS: -3.91 Total: -12.67 kcal Atomic # 14 Polarization: -0.59 SS G_CDS: 2.12 Total: 1.53 kcal Atomic # 16 Polarization: 0.31 SS G_CDS: -1.10 Total: -0.79 kcal Total: -20.51 -2.58 -23.09 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_15142604_13308390.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.769 kcal (2) G-P(sol) polarization free energy of solvation -20.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.06 seconds