Wall clock time and date at job start Thu Mar 4 2021 18:03:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86298 * 109.47281 * 2 1 4 4 C 1.50698 * 109.46955 * 120.00097 * 2 1 3 5 5 C 1.38504 * 119.80283 * 245.01803 * 4 2 1 6 6 C 1.37834 * 120.29697 * 179.76318 * 5 4 2 7 7 C 1.39663 * 119.90984 * 0.47357 * 6 5 4 8 8 C 1.47542 * 120.19273 * 179.78716 * 7 6 5 9 9 O 1.21592 * 119.99881 * 179.71556 * 8 7 6 10 10 N 1.34773 * 119.99801 * 359.72342 * 8 7 6 11 11 C 1.46499 * 120.00031 * 179.97438 * 10 8 7 12 12 C 1.52997 * 109.47695 * 204.99801 * 11 10 8 13 13 C 1.52997 * 109.47457 * 179.97438 * 12 11 10 14 14 C 1.53002 * 109.46817 * 60.00169 * 13 12 11 15 15 C 1.52996 * 109.47346 * 299.99737 * 14 13 12 16 16 C 1.53002 * 109.46891 * 59.99997 * 15 14 13 17 17 C 1.52997 * 109.46978 * 60.00410 * 16 15 14 18 18 C 1.53006 * 109.47164 * 299.99874 * 17 16 15 19 19 O 1.42895 * 109.47000 * 180.02562 * 18 17 16 20 20 C 1.52997 * 109.47127 * 59.99836 * 18 17 16 21 21 C 1.52999 * 109.46623 * 299.99900 * 18 17 16 22 22 C 1.40173 * 119.61728 * 359.50636 * 7 6 5 23 23 O 1.35657 * 120.15288 * 180.27470 * 22 7 6 24 24 C 1.38105 * 119.80645 * 64.99829 * 4 2 1 25 25 H 0.96704 * 113.99934 * 60.00260 * 1 2 3 26 26 H 1.09004 * 109.46959 * 239.99516 * 2 1 3 27 27 H 1.48502 * 110.00162 * 59.99685 * 3 2 1 28 28 H 1.48502 * 110.00121 * 181.32122 * 3 2 1 29 29 H 1.07998 * 119.85368 * 0.02562 * 5 4 2 30 30 H 1.08006 * 120.04476 * 180.23641 * 6 5 4 31 31 H 0.96998 * 120.00452 * 359.97438 * 10 8 7 32 32 H 1.09004 * 109.47041 * 324.99924 * 11 10 8 33 33 H 1.09001 * 109.46989 * 59.99548 * 12 11 10 34 34 H 1.08993 * 109.47194 * 299.99651 * 13 12 11 35 35 H 1.09002 * 109.46695 * 179.97438 * 13 12 11 36 36 H 1.09004 * 109.46733 * 179.97438 * 14 13 12 37 37 H 1.08992 * 109.47554 * 180.02562 * 15 14 13 38 38 H 1.09004 * 109.47108 * 300.00289 * 15 14 13 39 39 H 1.09002 * 109.47097 * 180.02562 * 16 15 14 40 40 H 1.09001 * 109.47375 * 59.99908 * 17 16 15 41 41 H 1.09000 * 109.47140 * 179.97438 * 17 16 15 42 42 H 0.96696 * 114.00485 * 299.99339 * 19 18 17 43 43 H 1.09002 * 109.47153 * 180.02562 * 20 18 17 44 44 H 1.09001 * 109.46832 * 60.00321 * 20 18 17 45 45 H 1.09000 * 109.47486 * 299.99829 * 21 18 17 46 46 H 1.09002 * 109.46716 * 179.97438 * 21 18 17 47 47 H 0.96706 * 113.99583 * 90.00179 * 23 22 7 48 48 H 1.07991 * 119.95728 * 0.02562 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7104 1.2304 5 6 2.6393 -0.0069 2.1907 6 6 3.0992 -0.6454 3.3223 7 6 2.8595 -2.0101 3.4980 8 6 3.3530 -2.7008 4.7047 9 8 3.1378 -3.8879 4.8566 10 7 4.0422 -2.0160 5.6388 11 6 4.5318 -2.7017 6.8372 12 6 4.7011 -1.6887 7.9712 13 6 5.2118 -2.4050 9.2230 14 6 6.5601 -3.0618 8.9204 15 6 6.3909 -4.0749 7.7864 16 6 5.8801 -3.3585 6.5346 17 6 6.8870 -2.2860 6.1142 18 6 7.0563 -1.2729 7.2482 19 8 7.9962 -0.2709 6.8553 20 6 7.5670 -1.9892 8.5000 21 6 5.7080 -0.6161 7.5507 22 6 2.1421 -2.7184 2.5241 23 8 1.8982 -4.0430 2.6864 24 6 1.6826 -2.0590 1.3941 25 1 -0.3933 0.4417 -0.7651 26 1 1.7923 -0.5139 -0.8900 27 1 1.5615 2.4679 1.2085 28 1 3.5347 1.7702 -0.0322 29 1 2.8282 1.0476 2.0543 30 1 3.6476 -0.0920 4.0704 31 1 4.2141 -1.0691 5.5175 32 1 3.8148 -3.4661 7.1369 33 1 3.7404 -1.2210 8.1871 34 1 4.4945 -3.1690 9.5225 35 1 5.3328 -1.6831 10.0307 36 1 6.9242 -3.5717 9.8123 37 1 7.3513 -4.5431 7.5711 38 1 5.6736 -4.8390 8.0860 39 1 5.7591 -4.0804 5.7269 40 1 7.8475 -2.7539 5.8986 41 1 6.5233 -1.7760 5.2222 42 1 8.8753 -0.6160 6.6476 43 1 7.6872 -1.2675 9.3080 44 1 8.5275 -2.4571 8.2844 45 1 5.3441 -0.1058 6.6589 46 1 5.8285 0.1053 8.3589 47 1 1.0726 -4.2368 3.1511 48 1 1.1299 -2.6007 0.6409 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_15142604_13422076.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 18:03:03 Heat of formation + Delta-G solvation = -137.432055 kcal Electronic energy + Delta-G solvation = -32121.472513 eV Core-core repulsion = 27913.966297 eV Total energy + Delta-G solvation = -4207.506216 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 346.166 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -42.95089 -41.57814 -39.85668 -38.45837 -37.51099 -37.24605 -35.79919 -33.81723 -33.43503 -32.21225 -31.40333 -31.28623 -27.85775 -27.04201 -26.41896 -24.03998 -23.71450 -22.89779 -22.46587 -22.34163 -21.26546 -19.75365 -18.95041 -18.56705 -18.43628 -17.99065 -17.62828 -16.74826 -16.62603 -16.44991 -16.15983 -15.94857 -15.67251 -15.48511 -15.32942 -15.23806 -15.02583 -14.77617 -14.58559 -14.29421 -14.18837 -14.08739 -13.73818 -13.58644 -13.46504 -13.40604 -13.09323 -13.03373 -12.51943 -12.22624 -12.16851 -12.10260 -11.99453 -11.96425 -11.86016 -11.62913 -11.29191 -10.99826 -10.85033 -10.51718 -10.44682 -10.21788 -10.09810 -9.91966 -4.93096 -0.56507 -0.04034 1.26121 1.55409 1.67985 1.92759 1.94844 2.40396 2.99856 3.05476 3.22468 3.35157 3.39631 3.45684 3.56300 3.70236 3.74985 3.83550 3.91433 3.98490 4.04133 4.08345 4.09876 4.12470 4.17207 4.20759 4.22911 4.25184 4.50744 4.51954 4.59154 4.61245 4.63915 4.64542 4.80581 4.85544 4.91138 4.94311 4.96370 4.98264 5.01527 5.05629 5.07388 5.10881 5.23059 5.27916 5.35398 5.40679 5.41768 5.43671 6.32692 6.60436 6.78690 6.86456 7.03496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.562 6.562 2 C -0.088 4.088 3 Si 0.777 3.223 4 C -0.039 4.039 5 C -0.153 4.153 6 C -0.056 4.056 7 C -0.181 4.181 8 C 0.559 3.441 9 O -0.556 6.556 10 N -0.709 5.709 11 C 0.158 3.842 12 C -0.083 4.083 13 C -0.109 4.109 14 C -0.083 4.083 15 C -0.108 4.108 16 C -0.090 4.090 17 C -0.131 4.131 18 C 0.137 3.863 19 O -0.576 6.576 20 C -0.134 4.134 21 C -0.101 4.101 22 C 0.161 3.839 23 O -0.492 6.492 24 C -0.134 4.134 25 H 0.406 0.594 26 H 0.098 0.902 27 H -0.288 1.288 28 H -0.285 1.285 29 H 0.136 0.864 30 H 0.157 0.843 31 H 0.407 0.593 32 H 0.077 0.923 33 H 0.093 0.907 34 H 0.073 0.927 35 H 0.082 0.918 36 H 0.087 0.913 37 H 0.070 0.930 38 H 0.066 0.934 39 H 0.052 0.948 40 H 0.069 0.931 41 H 0.059 0.941 42 H 0.389 0.611 43 H 0.073 0.927 44 H 0.071 0.929 45 H 0.066 0.934 46 H 0.079 0.921 47 H 0.409 0.591 48 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.011 5.119 -1.300 5.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.372 6.372 2 C -0.198 4.198 3 Si 0.682 3.318 4 C -0.040 4.040 5 C -0.170 4.170 6 C -0.075 4.075 7 C -0.185 4.185 8 C 0.347 3.653 9 O -0.435 6.435 10 N -0.362 5.362 11 C 0.053 3.947 12 C -0.102 4.102 13 C -0.147 4.147 14 C -0.101 4.101 15 C -0.146 4.146 16 C -0.110 4.110 17 C -0.169 4.169 18 C 0.097 3.903 19 O -0.384 6.384 20 C -0.172 4.172 21 C -0.139 4.139 22 C 0.114 3.886 23 O -0.305 6.305 24 C -0.152 4.152 25 H 0.258 0.742 26 H 0.116 0.884 27 H -0.215 1.215 28 H -0.212 1.212 29 H 0.153 0.847 30 H 0.175 0.825 31 H 0.245 0.755 32 H 0.095 0.905 33 H 0.111 0.889 34 H 0.092 0.908 35 H 0.101 0.899 36 H 0.105 0.895 37 H 0.089 0.911 38 H 0.085 0.915 39 H 0.071 0.929 40 H 0.088 0.912 41 H 0.077 0.923 42 H 0.239 0.761 43 H 0.091 0.909 44 H 0.090 0.910 45 H 0.085 0.915 46 H 0.097 0.903 47 H 0.270 0.730 48 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 0.403 4.858 -0.405 4.891 hybrid contribution 0.210 -0.810 0.094 0.842 sum 0.613 4.048 -0.312 4.106 Atomic orbital electron populations 1.86436 1.16684 1.82562 1.51538 1.24982 0.86371 1.11708 0.96700 0.94085 0.77572 0.74980 0.85152 1.19835 0.95288 0.93499 0.95374 1.21043 1.01175 1.00018 0.94813 1.21334 0.96663 0.92051 0.97417 1.20467 1.06502 0.94992 0.96513 1.18185 0.77939 0.86303 0.82897 1.90800 1.58470 1.16008 1.78201 1.45971 1.55601 1.13588 1.21041 1.20971 0.94814 0.94840 0.84032 1.21306 0.99621 0.94942 0.94334 1.21584 0.96566 1.00177 0.96327 1.21065 0.95324 0.95431 0.98316 1.21554 1.01596 0.97587 0.93845 1.21318 0.94496 0.96836 0.98319 1.22128 0.99632 0.96732 0.98428 1.21064 0.89578 0.87036 0.92635 1.86506 1.25136 1.36749 1.89993 1.22175 0.99020 0.98203 0.97793 1.21463 0.92630 0.97586 1.02201 1.18711 0.94127 0.83439 0.92312 1.84705 1.47215 1.18443 1.80167 1.21423 1.01047 0.94221 0.98540 0.74195 0.88446 1.21491 1.21208 0.84695 0.82538 0.75474 0.90533 0.88875 0.90849 0.89930 0.89464 0.91109 0.91548 0.92941 0.91194 0.92266 0.76134 0.90867 0.91017 0.91504 0.90260 0.73038 0.83418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 1.17 12.81 -148.98 -1.91 -0.74 16 2 C -0.09 0.20 2.78 71.24 0.20 0.40 16 3 Si 0.78 -3.43 29.83 68.60 2.05 -1.39 16 4 C -0.04 -0.14 5.39 -19.83 -0.11 -0.25 16 5 C -0.15 -0.45 8.64 22.24 0.19 -0.26 16 6 C -0.06 -0.13 9.54 22.52 0.21 0.09 16 7 C -0.18 -1.24 5.89 -20.01 -0.12 -1.36 16 8 C 0.56 4.88 7.73 86.70 0.67 5.55 16 9 O -0.56 -8.77 14.82 16.91 0.25 -8.52 16 10 N -0.71 -1.75 4.19 -445.69 -1.87 -3.62 16 11 C 0.16 0.32 2.05 44.99 0.09 0.41 16 12 C -0.08 0.19 2.88 -10.79 -0.03 0.16 16 13 C -0.11 0.37 5.19 30.59 0.16 0.53 16 14 C -0.08 0.24 3.19 -10.79 -0.03 0.20 16 15 C -0.11 0.03 5.19 30.59 0.16 0.19 16 16 C -0.09 -0.23 2.88 -10.79 -0.03 -0.26 16 17 C -0.13 -0.09 4.66 30.60 0.14 0.05 16 18 C 0.14 -0.12 1.15 -10.79 -0.01 -0.13 16 19 O -0.58 -0.46 12.98 -148.98 -1.93 -2.40 16 20 C -0.13 0.35 4.82 30.59 0.15 0.49 16 21 C -0.10 0.17 4.67 30.60 0.14 0.31 16 22 C 0.16 1.30 6.72 22.84 0.15 1.46 16 23 O -0.49 -4.63 11.58 -68.82 -0.80 -5.43 16 24 C -0.13 -0.72 9.60 22.34 0.21 -0.50 16 25 H 0.41 -5.12 8.74 -74.05 -0.65 -5.77 16 26 H 0.10 -0.57 7.96 -2.38 -0.02 -0.59 16 27 H -0.29 -0.59 7.04 99.48 0.70 0.11 16 28 H -0.29 -0.27 7.11 99.48 0.71 0.44 16 29 H 0.14 0.11 4.83 -2.91 -0.01 0.09 16 30 H 0.16 -0.61 6.40 -2.91 -0.02 -0.63 16 31 H 0.41 -0.72 4.90 -92.71 -0.45 -1.18 16 32 H 0.08 0.45 7.58 -2.38 -0.02 0.43 16 33 H 0.09 -0.33 8.14 -2.39 -0.02 -0.34 16 34 H 0.07 -0.25 8.14 -2.39 -0.02 -0.27 16 35 H 0.08 -0.40 8.14 -2.39 -0.02 -0.42 16 36 H 0.09 -0.36 8.14 -2.39 -0.02 -0.38 16 37 H 0.07 -0.05 8.14 -2.39 -0.02 -0.07 16 38 H 0.07 0.04 8.14 -2.38 -0.02 0.02 16 39 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 40 H 0.07 0.00 8.14 -2.39 -0.02 -0.02 16 41 H 0.06 0.16 7.61 -2.39 -0.02 0.14 16 42 H 0.39 -2.09 9.05 -74.06 -0.67 -2.76 16 43 H 0.07 -0.16 8.14 -2.39 -0.02 -0.18 16 44 H 0.07 -0.25 8.14 -2.39 -0.02 -0.27 16 45 H 0.07 -0.14 6.51 -2.39 -0.02 -0.16 16 46 H 0.08 -0.12 8.14 -2.39 -0.02 -0.14 16 47 H 0.41 0.93 9.06 -74.05 -0.67 0.26 16 48 H 0.15 0.48 8.06 -2.91 -0.02 0.45 16 Total: 0.00 -22.39 363.58 -3.43 -25.82 By element: Atomic # 1 Polarization: -9.43 SS G_CDS: -1.38 Total: -10.80 kcal Atomic # 6 Polarization: 4.92 SS G_CDS: 2.15 Total: 7.07 kcal Atomic # 7 Polarization: -1.75 SS G_CDS: -1.87 Total: -3.62 kcal Atomic # 8 Polarization: -12.70 SS G_CDS: -4.39 Total: -17.08 kcal Atomic # 14 Polarization: -3.43 SS G_CDS: 2.05 Total: -1.39 kcal Total: -22.39 -3.43 -25.82 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_15142604_13422076.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.610 kcal (2) G-P(sol) polarization free energy of solvation -22.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds