Wall clock time and date at job start Thu Mar 4 2021 18:03:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86298 * 109.47124 * 2 1 4 4 C 1.50701 * 109.47195 * 240.00221 * 2 1 3 5 5 C 1.31118 * 118.54850 * 119.97600 * 4 2 1 6 6 N 1.38921 * 121.84798 * 179.61824 * 5 4 2 7 7 C 1.47033 * 118.88620 * 13.31475 * 6 5 4 8 8 C 1.50697 * 109.82231 * 196.80034 * 7 6 5 9 9 O 1.21287 * 120.00244 * 18.20318 * 8 7 6 10 10 N 1.34780 * 119.99941 * 198.21163 * 8 7 6 11 11 C 1.46500 * 119.99944 * 180.02562 * 10 8 7 12 12 C 1.53002 * 109.46766 * 274.99519 * 11 10 8 13 13 C 1.52997 * 109.47092 * 180.02562 * 12 11 10 14 14 C 1.53006 * 109.47164 * 60.00174 * 13 12 11 15 15 C 1.52999 * 109.46623 * 299.99900 * 14 13 12 16 16 C 1.52997 * 109.46927 * 155.00048 * 11 10 8 17 17 C 1.52997 * 109.47457 * 59.99484 * 16 11 10 18 18 C 1.53002 * 109.46817 * 60.00169 * 17 16 11 19 19 O 1.42903 * 109.46923 * 179.97438 * 18 17 16 20 20 C 1.52997 * 109.47127 * 59.99836 * 14 13 12 21 21 C 1.52996 * 109.47346 * 299.99737 * 18 17 16 22 22 C 1.53540 * 107.65518 * 316.33928 * 7 6 5 23 23 C 1.50208 * 118.54607 * 299.99964 * 4 2 1 24 24 H 0.96698 * 114.00437 * 60.00030 * 1 2 3 25 25 H 1.09001 * 109.47278 * 119.99972 * 2 1 3 26 26 H 1.48507 * 109.99818 * 59.99883 * 3 2 1 27 27 H 1.48496 * 110.00074 * 181.32061 * 3 2 1 28 28 H 1.08002 * 119.07158 * 359.64425 * 5 4 2 29 29 H 0.96998 * 120.55808 * 193.34417 * 6 5 4 30 30 H 1.08996 * 109.86989 * 75.90725 * 7 6 5 31 31 H 0.97001 * 119.99485 * 359.97438 * 10 8 7 32 32 H 1.09000 * 109.47381 * 34.99693 * 11 10 8 33 33 H 1.09002 * 109.47067 * 60.00243 * 12 11 10 34 34 H 1.09000 * 109.47140 * 300.00226 * 13 12 11 35 35 H 1.09001 * 109.47375 * 180.02562 * 13 12 11 36 36 H 1.08996 * 109.46884 * 180.02562 * 14 13 12 37 37 H 1.09000 * 109.47486 * 299.99829 * 15 14 13 38 38 H 1.09002 * 109.46716 * 179.97438 * 15 14 13 39 39 H 1.09001 * 109.46989 * 299.99155 * 16 11 10 40 40 H 1.08993 * 109.47194 * 299.99651 * 17 16 11 41 41 H 1.09002 * 109.46695 * 179.97438 * 17 16 11 42 42 H 0.96696 * 114.00096 * 179.97438 * 19 18 17 43 43 H 1.09002 * 109.47153 * 180.02562 * 20 14 13 44 44 H 1.09001 * 109.46832 * 60.00321 * 20 14 13 45 45 H 1.08992 * 109.47554 * 180.02562 * 21 18 17 46 46 H 1.09004 * 109.47108 * 300.00289 * 21 18 17 47 47 H 1.09001 * 109.61860 * 180.67438 * 22 7 6 48 48 H 1.09005 * 109.62331 * 301.03324 * 22 7 6 49 49 H 1.08997 * 109.33170 * 79.76723 * 23 4 2 50 50 H 1.08998 * 109.18659 * 320.19979 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 2.6828 -0.0458 -2.0748 6 7 3.1892 -0.6351 -3.2264 7 6 2.6445 -1.9302 -3.6599 8 6 3.5808 -2.5724 -4.6509 9 8 4.7321 -2.1987 -4.7276 10 7 3.1387 -3.5619 -5.4521 11 6 4.0491 -4.1866 -6.4151 12 6 4.0783 -3.3577 -7.7008 13 6 5.0285 -4.0103 -8.7068 14 6 4.5420 -5.4259 -9.0236 15 6 4.5128 -6.2547 -7.7379 16 6 3.5631 -5.6022 -6.7320 17 6 2.1558 -5.5368 -7.3288 18 6 2.1852 -4.7079 -8.6145 19 8 0.8709 -4.6473 -9.1723 20 6 3.1346 -5.3600 -9.6201 21 6 2.6711 -3.2922 -8.2977 22 6 2.5131 -2.8202 -2.4156 23 6 1.5486 -2.1483 -1.4357 24 1 -0.3934 0.4417 -0.7650 25 1 1.7923 -0.5138 0.8900 26 1 1.5614 2.4679 1.2085 27 1 3.5345 1.7703 -0.0322 28 1 2.9148 0.9887 -1.8690 29 1 3.8905 -0.1998 -3.7357 30 1 1.6654 -1.7862 -4.1165 31 1 2.2180 -3.8609 -5.3906 32 1 5.0516 -4.2332 -5.9899 33 1 4.4245 -2.3491 -7.4751 34 1 6.0312 -4.0573 -8.2819 35 1 5.0498 -3.4196 -9.6226 36 1 5.2192 -5.8910 -9.7400 37 1 5.5154 -6.3017 -7.3130 38 1 4.1657 -7.2631 -7.9635 39 1 3.5422 -6.1928 -5.8161 40 1 1.4785 -5.0722 -6.6123 41 1 1.8098 -6.5454 -7.5549 42 1 0.8143 -4.1360 -9.9910 43 1 2.7879 -6.3685 -9.8454 44 1 3.1556 -4.7695 -10.5361 45 1 2.6916 -2.7016 -9.2135 46 1 1.9938 -2.8274 -7.5812 47 1 2.1219 -3.7960 -2.7033 48 1 3.4900 -2.9411 -1.9473 49 1 0.5356 -2.1986 -1.8348 50 1 1.5856 -2.6689 -0.4788 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_15142604_15413834.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 18:03:37 Heat of formation + Delta-G solvation = -108.743597 kcal Electronic energy + Delta-G solvation = -31132.908953 eV Core-core repulsion = 27125.280087 eV Total energy + Delta-G solvation = -4007.628867 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 335.193 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -42.88773 -41.14614 -39.44935 -37.55082 -37.27394 -35.81102 -33.76573 -33.32033 -33.17599 -32.21690 -31.42923 -27.87338 -26.98620 -26.32975 -25.28434 -23.78806 -22.90493 -22.54847 -22.32668 -21.24567 -19.49098 -19.28558 -18.56265 -18.06839 -17.81573 -17.17647 -16.72794 -16.33635 -16.09830 -15.89154 -15.87780 -15.44494 -15.30866 -15.21333 -15.12439 -14.89571 -14.69623 -14.37994 -14.30999 -14.09097 -13.95611 -13.70208 -13.53951 -13.34561 -13.08338 -12.98864 -12.89925 -12.21848 -12.17985 -12.05209 -11.95949 -11.93629 -11.89951 -11.85834 -11.58531 -11.25708 -11.24954 -10.89494 -10.79067 -10.44310 -10.16226 -10.06506 -8.45606 -5.00845 1.31329 1.41103 1.47117 1.61977 1.88553 1.99327 2.62684 3.11747 3.39366 3.44718 3.54679 3.67347 3.80048 3.80949 3.86276 3.89390 3.97044 4.01927 4.09558 4.14783 4.17089 4.22186 4.26076 4.30636 4.32256 4.44338 4.56417 4.61159 4.64676 4.65655 4.67956 4.70234 4.76241 4.93126 4.97630 4.99159 5.00414 5.01929 5.04705 5.10304 5.15774 5.22081 5.27454 5.29328 5.32997 5.39977 5.46472 5.47554 5.56625 6.23419 6.43686 6.80491 6.85450 6.95379 7.08667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.562 6.562 2 C -0.046 4.046 3 Si 0.759 3.241 4 C -0.288 4.288 5 C 0.141 3.859 6 N -0.737 5.737 7 C 0.140 3.860 8 C 0.514 3.486 9 O -0.572 6.572 10 N -0.706 5.706 11 C 0.158 3.842 12 C -0.088 4.088 13 C -0.109 4.109 14 C -0.084 4.084 15 C -0.110 4.110 16 C -0.083 4.083 17 C -0.101 4.101 18 C 0.136 3.864 19 O -0.576 6.576 20 C -0.135 4.135 21 C -0.130 4.130 22 C -0.123 4.123 23 C -0.049 4.049 24 H 0.392 0.608 25 H 0.090 0.910 26 H -0.306 1.306 27 H -0.294 1.294 28 H 0.143 0.857 29 H 0.407 0.593 30 H 0.114 0.886 31 H 0.413 0.587 32 H 0.072 0.928 33 H 0.058 0.942 34 H 0.063 0.937 35 H 0.070 0.930 36 H 0.082 0.918 37 H 0.070 0.930 38 H 0.078 0.922 39 H 0.093 0.907 40 H 0.073 0.927 41 H 0.074 0.926 42 H 0.389 0.611 43 H 0.069 0.931 44 H 0.070 0.930 45 H 0.069 0.931 46 H 0.067 0.933 47 H 0.098 0.902 48 H 0.053 0.947 49 H 0.080 0.920 50 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.490 -1.558 -5.656 6.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.370 6.370 2 C -0.157 4.157 3 Si 0.668 3.332 4 C -0.298 4.298 5 C 0.020 3.980 6 N -0.369 5.369 7 C 0.031 3.969 8 C 0.300 3.700 9 O -0.451 6.451 10 N -0.358 5.358 11 C 0.053 3.947 12 C -0.108 4.108 13 C -0.147 4.147 14 C -0.102 4.102 15 C -0.148 4.148 16 C -0.102 4.102 17 C -0.138 4.138 18 C 0.096 3.904 19 O -0.384 6.384 20 C -0.173 4.173 21 C -0.168 4.168 22 C -0.161 4.161 23 C -0.087 4.087 24 H 0.242 0.758 25 H 0.107 0.893 26 H -0.235 1.235 27 H -0.222 1.222 28 H 0.160 0.840 29 H 0.243 0.757 30 H 0.131 0.869 31 H 0.251 0.749 32 H 0.091 0.909 33 H 0.076 0.924 34 H 0.082 0.918 35 H 0.089 0.911 36 H 0.100 0.900 37 H 0.089 0.911 38 H 0.097 0.903 39 H 0.111 0.889 40 H 0.092 0.908 41 H 0.093 0.907 42 H 0.238 0.762 43 H 0.088 0.912 44 H 0.089 0.911 45 H 0.088 0.912 46 H 0.086 0.914 47 H 0.117 0.883 48 H 0.072 0.928 49 H 0.098 0.902 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.327 -1.502 -4.274 4.720 hybrid contribution 0.465 0.036 -0.232 0.521 sum -0.862 -1.466 -4.506 4.816 Atomic orbital electron populations 1.86426 1.18026 1.82086 1.50453 1.24744 0.84796 1.08773 0.97432 0.94208 0.77394 0.76658 0.84950 1.21001 1.11595 0.97768 0.99434 1.20482 0.95017 0.96042 0.86447 1.44369 1.43746 1.21031 1.27779 1.21085 0.96409 0.85322 0.94120 1.20860 0.88203 0.79958 0.80934 1.90720 1.20344 1.63528 1.70465 1.45983 1.15666 1.36848 1.37300 1.20915 0.93625 0.92135 0.87996 1.21303 0.95752 0.98907 0.94796 1.21558 0.98350 0.96018 0.98780 1.21055 0.96365 0.95441 0.97351 1.21577 0.99538 0.99202 0.94503 1.21280 0.94815 0.94310 0.99767 1.21453 0.96299 1.00721 0.95345 1.21054 0.81991 0.93943 0.93409 1.86516 1.29490 1.77182 1.45194 1.22164 0.95018 1.01741 0.98379 1.22117 0.96060 0.97072 1.01512 1.21841 1.00592 0.98932 0.94780 1.19902 0.98632 0.91528 0.98600 0.75830 0.89286 1.23504 1.22177 0.84037 0.75690 0.86900 0.74899 0.90946 0.92363 0.91813 0.91142 0.89952 0.91141 0.90290 0.88919 0.90828 0.90731 0.76152 0.91248 0.91109 0.91229 0.91421 0.88323 0.92837 0.90169 0.91855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -0.75 12.78 -148.98 -1.90 -2.66 16 2 C -0.05 -0.05 2.83 71.24 0.20 0.15 16 3 Si 0.76 -0.14 29.68 68.60 2.04 1.90 16 4 C -0.29 -0.05 5.45 -16.76 -0.09 -0.14 16 5 C 0.14 -0.08 9.63 83.41 0.80 0.72 16 6 N -0.74 -0.11 5.47 -329.01 -1.80 -1.90 16 7 C 0.14 -0.31 3.36 44.32 0.15 -0.16 16 8 C 0.51 0.60 7.06 87.66 0.62 1.22 16 9 O -0.57 -5.50 15.72 -3.05 -0.05 -5.55 16 10 N -0.71 2.53 4.23 -442.53 -1.87 0.66 16 11 C 0.16 -0.31 2.05 44.99 0.09 -0.21 16 12 C -0.09 0.13 2.88 -10.79 -0.03 0.10 16 13 C -0.11 0.29 5.19 30.60 0.16 0.45 16 14 C -0.08 0.37 3.20 -10.79 -0.03 0.33 16 15 C -0.11 0.53 5.19 30.58 0.16 0.69 16 16 C -0.08 0.41 2.88 -10.81 -0.03 0.38 16 17 C -0.10 0.44 4.67 30.59 0.14 0.58 16 18 C 0.14 -0.49 1.15 -10.83 -0.01 -0.50 16 19 O -0.58 0.92 12.98 -148.98 -1.93 -1.02 16 20 C -0.14 0.57 4.81 30.56 0.15 0.72 16 21 C -0.13 0.44 4.66 30.59 0.14 0.58 16 22 C -0.12 0.25 5.47 30.79 0.17 0.42 16 23 C -0.05 0.04 5.75 29.70 0.17 0.21 16 24 H 0.39 -2.76 8.70 -74.06 -0.64 -3.41 16 25 H 0.09 0.33 7.96 -2.39 -0.02 0.31 16 26 H -0.31 -2.44 7.11 99.48 0.71 -1.73 16 27 H -0.29 -1.51 7.10 99.48 0.71 -0.80 16 28 H 0.14 -0.50 4.37 -2.91 -0.01 -0.51 16 29 H 0.41 0.49 8.08 -92.71 -0.75 -0.26 16 30 H 0.11 -0.72 8.14 -2.39 -0.02 -0.74 16 31 H 0.41 -3.30 6.87 -92.71 -0.64 -3.94 16 32 H 0.07 0.20 7.58 -2.39 -0.02 0.18 16 33 H 0.06 0.17 8.14 -2.39 -0.02 0.15 16 34 H 0.06 -0.09 8.14 -2.39 -0.02 -0.11 16 35 H 0.07 -0.21 8.14 -2.39 -0.02 -0.23 16 36 H 0.08 -0.40 8.14 -2.39 -0.02 -0.42 16 37 H 0.07 -0.32 8.14 -2.39 -0.02 -0.33 16 38 H 0.08 -0.44 8.14 -2.39 -0.02 -0.46 16 39 H 0.09 -0.56 8.14 -2.39 -0.02 -0.57 16 40 H 0.07 -0.41 6.51 -2.39 -0.02 -0.43 16 41 H 0.07 -0.24 8.14 -2.39 -0.02 -0.26 16 42 H 0.39 -2.99 9.04 -74.06 -0.67 -3.66 16 43 H 0.07 -0.22 8.14 -2.39 -0.02 -0.24 16 44 H 0.07 -0.36 8.14 -2.39 -0.02 -0.37 16 45 H 0.07 -0.26 8.14 -2.39 -0.02 -0.28 16 46 H 0.07 -0.19 7.60 -2.38 -0.02 -0.20 16 47 H 0.10 -0.62 8.14 -2.39 -0.02 -0.64 16 48 H 0.05 0.15 8.14 -2.38 -0.02 0.13 16 49 H 0.08 -0.23 8.14 -2.39 -0.02 -0.25 16 50 H 0.06 0.07 8.14 -2.39 -0.02 0.05 16 Total: 0.00 -17.60 368.26 -4.45 -22.05 By element: Atomic # 1 Polarization: -17.35 SS G_CDS: -1.68 Total: -19.03 kcal Atomic # 6 Polarization: 2.79 SS G_CDS: 2.75 Total: 5.55 kcal Atomic # 7 Polarization: 2.42 SS G_CDS: -3.67 Total: -1.25 kcal Atomic # 8 Polarization: -5.33 SS G_CDS: -3.89 Total: -9.22 kcal Atomic # 14 Polarization: -0.14 SS G_CDS: 2.04 Total: 1.90 kcal Total: -17.60 -4.45 -22.05 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_15142604_15413834.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.693 kcal (2) G-P(sol) polarization free energy of solvation -17.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds