Wall clock time and date at job start Thu Mar 4 2021 18:03:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86299 * 109.46685 * 2 1 4 4 C 1.50700 * 109.47163 * 239.99967 * 2 1 3 5 5 C 1.34502 * 125.48902 * 150.28862 * 4 2 1 6 6 C 1.46751 * 106.36277 * 180.12139 * 5 4 2 7 7 C 1.47256 * 126.97059 * 179.88268 * 6 5 4 8 8 O 1.21633 * 120.00315 * 179.68254 * 7 6 5 9 9 N 1.34777 * 120.00032 * 359.68990 * 7 6 5 10 10 C 1.46500 * 120.00075 * 179.97438 * 9 7 6 11 11 C 1.52997 * 109.47007 * 84.99755 * 10 9 7 12 12 C 1.52999 * 109.47317 * 179.97438 * 11 10 9 13 13 C 1.53005 * 109.47159 * 300.00546 * 12 11 10 14 14 C 1.52997 * 109.47452 * 59.99536 * 13 12 11 15 15 C 1.53000 * 109.47023 * 204.99547 * 10 9 7 16 16 C 1.52996 * 109.47328 * 300.00366 * 15 10 9 17 17 C 1.53002 * 109.46891 * 299.99597 * 16 15 10 18 18 O 1.42905 * 109.47208 * 180.02562 * 17 16 15 19 19 C 1.52997 * 109.46733 * 299.99162 * 13 12 11 20 20 C 1.52997 * 109.46978 * 60.00410 * 17 16 15 21 21 C 1.36342 * 106.06098 * 359.62327 * 6 5 4 22 22 C 1.50995 * 126.79347 * 180.25887 * 21 6 5 23 23 C 1.53394 * 108.25145 * 164.27983 * 22 21 6 24 24 C 1.53157 * 109.03950 * 48.47456 * 23 22 21 25 25 C 1.53132 * 109.52744 * 290.42086 * 24 23 22 26 26 N 1.35208 * 108.65934 * 0.24087 * 21 6 5 27 27 H 0.96703 * 113.99605 * 60.00298 * 1 2 3 28 28 H 1.08995 * 109.46767 * 119.99865 * 2 1 3 29 29 H 1.48499 * 110.00198 * 298.67727 * 3 2 1 30 30 H 1.48497 * 110.00154 * 60.00226 * 3 2 1 31 31 H 1.07990 * 126.82017 * 0.02562 * 5 4 2 32 32 H 0.96997 * 119.99651 * 359.97438 * 9 7 6 33 33 H 1.09002 * 109.47092 * 324.99806 * 10 9 7 34 34 H 1.08996 * 109.47853 * 300.00060 * 11 10 9 35 35 H 1.09000 * 109.47486 * 180.02562 * 12 11 10 36 36 H 1.09002 * 109.46716 * 60.00091 * 12 11 10 37 37 H 1.09001 * 109.46812 * 179.97438 * 13 12 11 38 38 H 1.08993 * 109.47194 * 179.97438 * 14 13 12 39 39 H 1.09002 * 109.46695 * 59.99734 * 14 13 12 40 40 H 1.09004 * 109.46724 * 60.00549 * 15 10 9 41 41 H 1.08992 * 109.47554 * 59.99639 * 16 15 10 42 42 H 1.09004 * 109.47108 * 179.97438 * 16 15 10 43 43 H 0.96697 * 113.99519 * 59.99573 * 18 17 16 44 44 H 1.09004 * 109.46976 * 180.02562 * 19 13 12 45 45 H 1.09000 * 109.47380 * 300.00211 * 19 13 12 46 46 H 1.09001 * 109.47375 * 59.99908 * 20 17 16 47 47 H 1.09000 * 109.47140 * 179.97438 * 20 17 16 48 48 H 1.09008 * 109.70563 * 283.99494 * 22 21 6 49 49 H 1.09006 * 109.70734 * 44.61177 * 22 21 6 50 50 H 1.09004 * 109.55284 * 288.60388 * 23 22 21 51 51 H 1.09004 * 109.53991 * 168.34097 * 23 22 21 52 52 H 1.09004 * 109.46003 * 170.40107 * 24 23 22 53 53 H 1.09002 * 109.46381 * 50.44311 * 24 23 22 54 54 H 1.09004 * 109.56140 * 291.17722 * 25 24 23 55 55 H 1.09002 * 109.65796 * 170.88893 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9314 -0.7104 -1.2305 5 6 3.0884 -0.4499 -1.8648 6 6 3.1555 -1.3775 -3.0000 7 6 4.2338 -1.4798 -3.9976 8 8 4.1616 -2.3043 -4.8889 9 7 5.3010 -0.6601 -3.9228 10 6 6.3741 -0.7623 -4.9149 11 6 6.0088 0.0659 -6.1484 12 6 7.1298 -0.0402 -7.1843 13 6 8.4327 0.4893 -6.5819 14 6 8.7980 -0.3388 -5.3484 15 6 7.6773 -0.2329 -4.3129 16 6 7.4945 1.2312 -3.9082 17 6 7.1293 2.0594 -5.1418 18 8 6.9591 3.4270 -4.7640 19 6 8.2494 1.9534 -6.1773 20 6 5.8261 1.5301 -5.7438 21 6 2.0196 -2.1293 -2.9404 22 6 1.6163 -3.2351 -3.8863 23 6 0.4954 -4.0474 -3.2255 24 6 -0.5697 -3.0858 -2.6902 25 6 -0.0054 -2.3101 -1.4966 26 7 1.2886 -1.7250 -1.8773 27 1 -0.3933 0.4417 -0.7651 28 1 1.7923 -0.5138 0.8900 29 1 1.5878 2.4586 -1.2243 30 1 1.5614 2.4679 1.2085 31 1 3.8217 0.2951 -1.5937 32 1 5.3585 -0.0025 -3.2121 33 1 6.5043 -1.8054 -5.2031 34 1 5.0804 -0.3110 -6.5773 35 1 6.8697 0.5501 -8.0629 36 1 7.2604 -1.0833 -7.4726 37 1 9.2314 0.4133 -7.3198 38 1 9.7264 0.0381 -4.9196 39 1 8.9286 -1.3819 -5.6368 40 1 7.9375 -0.8231 -3.4341 41 1 6.6961 1.3072 -3.1702 42 1 8.4228 1.6081 -3.4789 43 1 7.7477 3.8283 -4.3741 44 1 9.1778 2.3308 -5.7485 45 1 7.9891 2.5434 -7.0561 46 1 5.0276 1.6062 -5.0057 47 1 5.5656 2.1204 -6.6223 48 1 1.2574 -2.8058 -4.8218 49 1 2.4719 -3.8815 -4.0822 50 1 0.9054 -4.6323 -2.4022 51 1 0.0470 -4.7153 -3.9611 52 1 -1.4450 -3.6531 -2.3737 53 1 -0.8552 -2.3862 -3.4758 54 1 0.1339 -2.9874 -0.6540 55 1 -0.6967 -1.5155 -1.2157 There are 70 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 70 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_15142604_16915396.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 18:03:44 Heat of formation + Delta-G solvation = -87.373286 kcal Electronic energy + Delta-G solvation = -36980.665523 eV Core-core repulsion = 32561.973442 eV Total energy + Delta-G solvation = -4418.692081 eV No. of doubly occupied orbitals = 70 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 373.209 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -42.91774 -42.63151 -39.95823 -38.11799 -37.40275 -36.91793 -35.59598 -33.70412 -33.52975 -32.35421 -31.51973 -31.15681 -29.44860 -26.95817 -26.92866 -26.23838 -24.69217 -23.98982 -22.71315 -22.37088 -22.14827 -21.75901 -20.77125 -19.76783 -19.07399 -18.47684 -17.90419 -17.48070 -16.94102 -16.64464 -16.54776 -16.18133 -15.90538 -15.84304 -15.40666 -15.35263 -15.28301 -15.23146 -15.11362 -14.99169 -14.66912 -14.57791 -14.40083 -14.35974 -14.13330 -13.88248 -13.60420 -13.48135 -13.26820 -13.21387 -12.99653 -12.81801 -12.40972 -12.20260 -12.09810 -12.01283 -11.98820 -11.87660 -11.85442 -11.82879 -11.77578 -11.51822 -11.11332 -10.92505 -10.87018 -10.71789 -10.37509 -9.97193 -9.55480 -9.05679 -4.92731 0.72166 1.03952 1.42773 1.65912 1.77555 2.01667 2.42041 2.55909 3.16406 3.18755 3.45305 3.45897 3.54310 3.56551 3.66896 3.76492 3.79768 3.86764 3.94975 4.02961 4.11217 4.19184 4.20978 4.24940 4.29152 4.30440 4.32128 4.35067 4.37418 4.37949 4.50561 4.61401 4.63283 4.71221 4.73523 4.74798 4.75738 4.77803 4.81240 4.92202 4.98803 5.00542 5.02630 5.05368 5.07096 5.10815 5.13826 5.16778 5.17889 5.21706 5.35347 5.43483 5.46132 5.53031 5.62705 5.72375 6.01141 6.20510 6.31641 6.69518 6.95457 7.38729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.543 6.543 2 C -0.053 4.053 3 Si 0.796 3.204 4 C -0.017 4.017 5 C -0.162 4.162 6 C -0.257 4.257 7 C 0.589 3.411 8 O -0.588 6.588 9 N -0.709 5.709 10 C 0.160 3.840 11 C -0.088 4.088 12 C -0.110 4.110 13 C -0.083 4.083 14 C -0.107 4.107 15 C -0.084 4.084 16 C -0.135 4.135 17 C 0.138 3.862 18 O -0.578 6.578 19 C -0.135 4.135 20 C -0.095 4.095 21 C 0.102 3.898 22 C -0.053 4.053 23 C -0.124 4.124 24 C -0.134 4.134 25 C 0.095 3.905 26 N -0.428 5.428 27 H 0.385 0.615 28 H 0.132 0.868 29 H -0.295 1.295 30 H -0.292 1.292 31 H 0.180 0.820 32 H 0.409 0.591 33 H 0.071 0.929 34 H 0.052 0.948 35 H 0.063 0.937 36 H 0.065 0.935 37 H 0.084 0.916 38 H 0.086 0.914 39 H 0.068 0.932 40 H 0.092 0.908 41 H 0.075 0.925 42 H 0.091 0.909 43 H 0.391 0.609 44 H 0.082 0.918 45 H 0.058 0.942 46 H 0.060 0.940 47 H 0.053 0.947 48 H 0.078 0.922 49 H 0.081 0.919 50 H 0.067 0.933 51 H 0.089 0.911 52 H 0.107 0.893 53 H 0.070 0.930 54 H 0.085 0.915 55 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.954 1.145 3.687 4.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.351 6.351 2 C -0.161 4.161 3 Si 0.699 3.301 4 C -0.126 4.126 5 C -0.186 4.186 6 C -0.266 4.266 7 C 0.380 3.620 8 O -0.470 6.470 9 N -0.360 5.360 10 C 0.055 3.945 11 C -0.107 4.107 12 C -0.148 4.148 13 C -0.101 4.101 14 C -0.145 4.145 15 C -0.103 4.103 16 C -0.172 4.172 17 C 0.098 3.902 18 O -0.386 6.386 19 C -0.173 4.173 20 C -0.133 4.133 21 C -0.016 4.016 22 C -0.091 4.091 23 C -0.162 4.162 24 C -0.171 4.171 25 C -0.024 4.024 26 N -0.105 5.105 27 H 0.235 0.765 28 H 0.150 0.850 29 H -0.221 1.221 30 H -0.220 1.220 31 H 0.197 0.803 32 H 0.247 0.753 33 H 0.089 0.911 34 H 0.071 0.929 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.102 0.898 38 H 0.105 0.895 39 H 0.087 0.913 40 H 0.110 0.890 41 H 0.093 0.907 42 H 0.109 0.891 43 H 0.241 0.759 44 H 0.101 0.899 45 H 0.077 0.923 46 H 0.079 0.921 47 H 0.072 0.928 48 H 0.096 0.904 49 H 0.099 0.901 50 H 0.086 0.914 51 H 0.107 0.893 52 H 0.126 0.874 53 H 0.088 0.912 54 H 0.103 0.897 55 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 1.854 0.866 3.540 4.089 hybrid contribution -0.818 0.082 -0.385 0.907 sum 1.036 0.948 3.156 3.454 Atomic orbital electron populations 1.86565 1.18337 1.79805 1.50392 1.25004 0.83275 1.11547 0.96276 0.93503 0.90081 0.70147 0.76328 1.20945 0.96227 0.95537 0.99857 1.21969 0.98403 1.02645 0.95538 1.20013 0.98121 1.06160 1.02339 1.17554 0.81501 0.79751 0.83221 1.90732 1.79881 1.38779 1.37627 1.45764 1.20349 1.38147 1.31698 1.20874 0.86537 0.99284 0.87777 1.21316 0.98708 0.94633 0.96076 1.21570 0.94408 1.01527 0.97324 1.21055 0.97083 0.94214 0.97768 1.21557 0.97826 1.00545 0.94526 1.21271 0.93228 0.96458 0.99322 1.22209 1.03352 0.94379 0.97307 1.21006 0.94370 0.81309 0.93517 1.86537 1.42711 1.25528 1.83847 1.22167 0.99010 0.96783 0.99301 1.21338 0.96798 0.94760 1.00397 1.20559 0.91789 0.98108 0.91152 1.20422 0.99493 0.93479 0.95659 1.21698 0.95385 0.97894 1.01180 1.21925 0.99418 0.98757 0.97027 1.22443 0.82095 0.99312 0.98597 1.44036 1.17902 1.27098 1.21418 0.76525 0.85023 1.22136 1.21971 0.80316 0.75328 0.91109 0.92910 0.91841 0.91591 0.89802 0.89543 0.91348 0.89015 0.90672 0.89078 0.75909 0.89902 0.92286 0.92122 0.92805 0.90398 0.90053 0.91444 0.89276 0.87428 0.91165 0.89655 0.86968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 0.75 10.28 -148.98 -1.53 -0.78 16 2 C -0.05 0.14 3.00 71.24 0.21 0.35 16 3 Si 0.80 -2.85 31.12 68.60 2.13 -0.72 16 4 C -0.02 -0.01 6.14 40.99 0.25 0.24 16 5 C -0.16 -0.14 9.09 23.64 0.21 0.07 16 6 C -0.26 -1.77 6.28 -19.12 -0.12 -1.89 16 7 C 0.59 5.44 7.77 86.61 0.67 6.11 16 8 O -0.59 -9.49 15.00 -4.13 -0.06 -9.55 16 9 N -0.71 -1.90 4.23 -445.95 -1.89 -3.78 16 10 C 0.16 0.36 2.05 44.99 0.09 0.45 16 11 C -0.09 -0.33 2.88 -10.79 -0.03 -0.36 16 12 C -0.11 -0.13 5.19 30.60 0.16 0.02 16 13 C -0.08 0.21 3.19 -10.79 -0.03 0.18 16 14 C -0.11 0.46 5.19 30.58 0.16 0.62 16 15 C -0.08 0.29 2.88 -10.81 -0.03 0.26 16 16 C -0.13 0.68 4.64 30.59 0.14 0.83 16 17 C 0.14 -0.17 1.15 -10.82 -0.01 -0.18 16 18 O -0.58 -0.13 12.98 -148.98 -1.93 -2.06 16 19 C -0.13 0.34 4.81 30.56 0.15 0.49 16 20 C -0.10 -0.32 4.69 30.60 0.14 -0.18 16 21 C 0.10 0.67 6.57 41.69 0.27 0.94 16 22 C -0.05 -0.28 5.32 30.07 0.16 -0.12 16 23 C -0.12 0.07 5.98 30.78 0.18 0.25 16 24 C -0.13 0.43 5.92 30.69 0.18 0.61 16 25 C 0.10 -0.17 6.22 86.32 0.54 0.36 16 26 N -0.43 -1.11 3.11 -493.59 -1.54 -2.65 16 27 H 0.39 -2.13 8.27 -74.06 -0.61 -2.74 16 28 H 0.13 -0.61 7.96 -2.39 -0.02 -0.63 16 29 H -0.29 -0.87 7.11 99.48 0.71 -0.16 16 30 H -0.29 -0.87 7.11 99.48 0.71 -0.16 16 31 H 0.18 -1.14 6.53 -2.92 -0.02 -1.15 16 32 H 0.41 -0.85 5.99 -92.71 -0.56 -1.40 16 33 H 0.07 0.47 7.58 -2.39 -0.02 0.46 16 34 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 35 H 0.06 0.12 8.14 -2.39 -0.02 0.10 16 36 H 0.07 0.12 8.14 -2.39 -0.02 0.10 16 37 H 0.08 -0.30 8.14 -2.39 -0.02 -0.32 16 38 H 0.09 -0.59 8.14 -2.39 -0.02 -0.61 16 39 H 0.07 -0.24 8.14 -2.39 -0.02 -0.26 16 40 H 0.09 -0.44 8.14 -2.39 -0.02 -0.46 16 41 H 0.07 -0.43 6.50 -2.39 -0.02 -0.45 16 42 H 0.09 -0.76 8.14 -2.38 -0.02 -0.78 16 43 H 0.39 -2.99 9.04 -74.06 -0.67 -3.66 16 44 H 0.08 -0.47 8.14 -2.38 -0.02 -0.49 16 45 H 0.06 0.01 8.14 -2.39 -0.02 -0.01 16 46 H 0.06 0.30 7.60 -2.39 -0.02 0.28 16 47 H 0.05 0.32 8.14 -2.39 -0.02 0.31 16 48 H 0.08 0.50 8.14 -2.38 -0.02 0.49 16 49 H 0.08 0.71 7.40 -2.38 -0.02 0.70 16 50 H 0.07 0.00 8.12 -2.39 -0.02 -0.02 16 51 H 0.09 -0.23 8.14 -2.38 -0.02 -0.25 16 52 H 0.11 -0.74 8.14 -2.39 -0.02 -0.76 16 53 H 0.07 -0.14 8.11 -2.39 -0.02 -0.16 16 54 H 0.09 -0.18 8.14 -2.39 -0.02 -0.20 16 55 H 0.11 -0.43 5.67 -2.39 -0.01 -0.44 16 Total: 0.00 -20.31 400.81 -2.39 -22.69 By element: Atomic # 1 Polarization: -11.32 SS G_CDS: -0.88 Total: -12.20 kcal Atomic # 6 Polarization: 5.75 SS G_CDS: 3.30 Total: 9.05 kcal Atomic # 7 Polarization: -3.01 SS G_CDS: -3.42 Total: -6.43 kcal Atomic # 8 Polarization: -8.87 SS G_CDS: -3.53 Total: -12.40 kcal Atomic # 14 Polarization: -2.85 SS G_CDS: 2.13 Total: -0.72 kcal Total: -20.31 -2.39 -22.69 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_15142604_16915396.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.682 kcal (2) G-P(sol) polarization free energy of solvation -20.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds