Wall clock time and date at job start Thu Mar 4 2021 18:05:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42894 * 1 3 3 Si 1.86301 * 109.47093 * 2 1 4 4 C 1.50707 * 109.47214 * 119.99968 * 2 1 3 5 5 C 1.32763 * 124.70938 * 65.00484 * 4 2 1 6 6 C 1.44435 * 113.08351 * 180.02562 * 5 4 2 7 7 C 1.47190 * 123.46336 * 179.97438 * 6 5 4 8 8 O 1.21635 * 119.99941 * 359.97438 * 7 6 5 9 9 N 1.34769 * 119.99768 * 179.97438 * 7 6 5 10 10 C 1.46503 * 119.99689 * 179.97438 * 9 7 6 11 11 C 1.52997 * 109.47195 * 275.00013 * 10 9 7 12 12 C 1.52997 * 109.47441 * 299.99897 * 11 10 9 13 13 C 1.53002 * 109.47302 * 300.00393 * 12 11 10 14 14 C 1.52997 * 109.47193 * 59.99455 * 13 12 11 15 15 C 1.52997 * 109.47441 * 300.00460 * 14 13 12 16 16 C 1.53003 * 109.46944 * 299.99742 * 15 14 13 17 17 C 1.53000 * 109.47167 * 60.00033 * 16 15 14 18 18 O 1.42900 * 109.47453 * 179.97438 * 17 16 15 19 19 C 1.53003 * 109.46951 * 300.00062 * 17 16 15 20 20 C 1.53002 * 109.47015 * 59.99722 * 17 16 15 21 21 C 1.36014 * 113.07385 * 359.97438 * 6 5 4 22 22 S 1.70444 * 110.81789 * 0.23282 * 21 6 5 23 23 H 0.96699 * 114.00047 * 60.00483 * 1 2 3 24 24 H 1.09001 * 109.47491 * 240.00056 * 2 1 3 25 25 H 1.48501 * 109.99841 * 60.00057 * 3 2 1 26 26 H 1.48499 * 110.00136 * 181.31797 * 3 2 1 27 27 H 1.07999 * 123.46132 * 359.97383 * 5 4 2 28 28 H 0.97004 * 120.00627 * 0.02562 * 9 7 6 29 29 H 1.09000 * 109.46972 * 35.00309 * 10 9 7 30 30 H 1.08992 * 109.47229 * 60.00066 * 11 10 9 31 31 H 1.08992 * 109.47804 * 180.02562 * 12 11 10 32 32 H 1.09001 * 109.46799 * 59.99964 * 12 11 10 33 33 H 1.09000 * 109.47212 * 179.97438 * 13 12 11 34 34 H 1.09001 * 109.47036 * 180.02562 * 14 13 12 35 35 H 1.09001 * 109.47153 * 60.00279 * 14 13 12 36 36 H 1.09001 * 109.47603 * 180.02562 * 15 14 13 37 37 H 1.08994 * 109.47180 * 179.97438 * 16 15 14 38 38 H 1.09001 * 109.47260 * 300.00082 * 16 15 14 39 39 H 0.96698 * 114.00056 * 60.00219 * 18 17 16 40 40 H 1.09001 * 109.47128 * 299.99737 * 19 17 16 41 41 H 1.09004 * 109.46999 * 179.97438 * 19 17 16 42 42 H 1.08994 * 109.47294 * 60.00482 * 20 17 16 43 43 H 1.09004 * 109.47128 * 180.02562 * 20 17 16 44 44 H 1.08002 * 124.58647 * 179.97438 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 1.7485 -2.0003 1.4863 6 6 2.3356 -2.4181 2.7381 7 6 2.2685 -3.7982 3.2454 8 8 1.6955 -4.6559 2.6008 9 7 2.8421 -4.1114 4.4240 10 6 2.7748 -5.4850 4.9292 11 6 1.4588 -5.6874 5.6828 12 6 1.3873 -4.7084 6.8564 13 6 2.5618 -4.9613 7.8039 14 6 3.8778 -4.7589 7.0502 15 6 3.9492 -5.7379 5.8767 16 6 3.8791 -7.1724 6.4042 17 6 2.5631 -7.3749 7.1579 18 8 2.4972 -8.7148 7.6501 19 6 2.4916 -6.3958 8.3314 20 6 1.3887 -7.1218 6.2104 21 6 2.9567 -1.4051 3.4000 22 16 2.8340 0.0538 2.5272 23 1 -0.3933 0.4416 -0.7651 24 1 1.7923 -0.5138 -0.8900 25 1 1.5614 2.4679 1.2085 26 1 3.5345 1.7703 -0.0321 27 1 1.2149 -2.6684 0.8266 28 1 3.2988 -3.4274 4.9383 29 1 2.8257 -6.1825 4.0931 30 1 0.6222 -5.5071 5.0079 31 1 0.4500 -4.8528 7.3936 32 1 1.4373 -3.6864 6.4805 33 1 2.5111 -4.2635 8.6397 34 1 4.7144 -4.9395 7.7251 35 1 3.9278 -3.7370 6.6744 36 1 4.8870 -5.5940 5.3400 37 1 3.9296 -7.8698 5.5682 38 1 4.7158 -7.3526 7.0792 39 1 3.2127 -8.9460 8.2582 40 1 3.3283 -6.5760 9.0064 41 1 1.5538 -6.5397 8.8681 42 1 1.4395 -7.8193 5.3744 43 1 0.4511 -7.2656 6.7474 44 1 3.4562 -1.5101 4.3518 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_15142604_6894386.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 18:05:38 Heat of formation + Delta-G solvation = -93.612950 kcal Electronic energy + Delta-G solvation = -27882.261452 eV Core-core repulsion = 24084.489813 eV Total energy + Delta-G solvation = -3797.771638 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 336.123 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.92201 -40.81567 -38.75484 -37.66238 -37.19202 -35.49397 -33.81842 -33.30233 -32.14546 -30.87469 -27.19910 -27.04704 -26.98970 -25.20558 -22.98162 -22.61726 -22.37898 -21.64399 -20.52371 -19.26287 -18.53796 -18.37311 -18.21876 -17.92763 -16.80903 -16.35260 -16.30672 -15.94185 -15.78789 -15.48071 -15.29996 -15.18955 -14.90692 -14.55316 -14.42381 -14.33545 -13.96087 -13.95180 -13.77709 -13.63378 -13.54539 -13.36856 -13.08028 -12.69317 -12.57653 -12.39329 -12.11095 -12.09458 -12.00939 -11.83156 -11.57102 -11.30882 -11.12984 -10.81605 -10.50156 -10.46307 -10.18855 -10.04914 -9.61996 -5.19491 -0.47450 0.26710 0.60409 0.72572 1.18745 1.59919 1.87593 1.96912 2.16355 3.11255 3.30295 3.34822 3.39366 3.67030 3.74935 3.77005 3.84550 3.91544 3.93997 4.03887 4.07753 4.11429 4.15304 4.19125 4.21328 4.33232 4.40357 4.50530 4.55370 4.58902 4.65331 4.72985 4.79791 4.88384 4.94048 4.95005 4.96223 5.00349 5.04946 5.07938 5.10675 5.24313 5.28377 5.32364 5.42899 5.45113 6.36688 6.83077 6.85579 7.05439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.564 6.564 2 C -0.051 4.051 3 Si 0.760 3.240 4 C -0.210 4.210 5 C -0.071 4.071 6 C -0.177 4.177 7 C 0.578 3.422 8 O -0.579 6.579 9 N -0.701 5.701 10 C 0.159 3.841 11 C -0.088 4.088 12 C -0.108 4.108 13 C -0.081 4.081 14 C -0.110 4.110 15 C -0.084 4.084 16 C -0.132 4.132 17 C 0.135 3.865 18 O -0.580 6.580 19 C -0.133 4.133 20 C -0.100 4.100 21 C -0.183 4.183 22 S 0.188 5.812 23 H 0.406 0.594 24 H 0.099 0.901 25 H -0.270 1.270 26 H -0.263 1.263 27 H 0.141 0.859 28 H 0.412 0.588 29 H 0.065 0.935 30 H 0.053 0.947 31 H 0.061 0.939 32 H 0.069 0.931 33 H 0.090 0.910 34 H 0.088 0.912 35 H 0.077 0.923 36 H 0.092 0.908 37 H 0.061 0.939 38 H 0.093 0.907 39 H 0.392 0.608 40 H 0.084 0.916 41 H 0.061 0.939 42 H 0.054 0.946 43 H 0.064 0.936 44 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.009 6.519 1.601 8.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.375 6.375 2 C -0.163 4.163 3 Si 0.661 3.339 4 C -0.326 4.326 5 C -0.101 4.101 6 C -0.195 4.195 7 C 0.364 3.636 8 O -0.460 6.460 9 N -0.353 5.353 10 C 0.054 3.946 11 C -0.108 4.108 12 C -0.146 4.146 13 C -0.099 4.099 14 C -0.147 4.147 15 C -0.103 4.103 16 C -0.170 4.170 17 C 0.095 3.905 18 O -0.389 6.389 19 C -0.171 4.171 20 C -0.138 4.138 21 C -0.321 4.321 22 S 0.454 5.546 23 H 0.257 0.743 24 H 0.117 0.883 25 H -0.195 1.195 26 H -0.188 1.188 27 H 0.159 0.841 28 H 0.251 0.749 29 H 0.083 0.917 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.108 0.892 34 H 0.106 0.894 35 H 0.095 0.905 36 H 0.110 0.890 37 H 0.079 0.921 38 H 0.112 0.888 39 H 0.242 0.758 40 H 0.103 0.897 41 H 0.080 0.920 42 H 0.072 0.928 43 H 0.082 0.918 44 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 5.166 7.650 2.014 9.448 hybrid contribution -0.307 -2.157 0.170 2.185 sum 4.859 5.494 2.184 7.653 Atomic orbital electron populations 1.86470 1.17033 1.82556 1.51433 1.24340 0.85988 1.11133 0.94798 0.93585 0.79003 0.75122 0.86194 1.23803 1.09147 0.97178 1.02512 1.21059 0.98363 0.94903 0.95746 1.20175 1.07310 0.94130 0.97909 1.17810 0.77822 0.86964 0.80955 1.90794 1.45114 1.50860 1.59198 1.45771 1.56659 1.12130 1.20720 1.20914 0.95369 0.82541 0.95783 1.21300 0.97398 0.94890 0.97190 1.21558 0.99029 0.98641 0.95343 1.21057 0.94539 0.96402 0.97940 1.21647 0.97784 0.98872 0.96405 1.21272 0.97230 0.95727 0.96053 1.22144 0.97947 0.96043 1.00899 1.21088 0.94428 0.81862 0.93142 1.86539 1.55110 1.30042 1.67170 1.22171 1.03026 0.94764 0.97139 1.21379 0.98273 0.95737 0.98414 1.26121 1.03293 0.97144 1.05529 1.83168 1.50624 1.09833 1.10967 0.74263 0.88289 1.19532 1.18804 0.84128 0.74926 0.91701 0.92838 0.92031 0.91254 0.89164 0.89353 0.90452 0.88974 0.92062 0.88842 0.75841 0.89749 0.92017 0.92753 0.91762 0.77703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -0.38 12.86 -148.98 -1.92 -2.30 16 2 C -0.05 0.02 2.93 71.24 0.21 0.23 16 3 Si 0.76 -2.91 30.92 68.60 2.12 -0.78 16 4 C -0.21 -1.02 5.69 24.51 0.14 -0.88 16 5 C -0.07 -0.60 9.95 22.67 0.23 -0.37 16 6 C -0.18 -1.06 5.98 -19.87 -0.12 -1.18 16 7 C 0.58 5.05 7.76 86.60 0.67 5.72 16 8 O -0.58 -10.37 16.46 -4.14 -0.07 -10.44 16 9 N -0.70 -0.76 4.20 -446.03 -1.87 -2.63 16 10 C 0.16 0.38 2.05 44.99 0.09 0.47 16 11 C -0.09 -0.34 2.87 -10.79 -0.03 -0.37 16 12 C -0.11 0.06 5.04 30.59 0.15 0.21 16 13 C -0.08 0.37 3.20 -10.79 -0.03 0.34 16 14 C -0.11 0.79 5.02 30.59 0.15 0.95 16 15 C -0.08 0.30 2.88 -10.79 -0.03 0.27 16 16 C -0.13 0.29 4.81 30.60 0.15 0.44 16 17 C 0.13 0.07 1.15 -10.79 -0.01 0.06 16 18 O -0.58 -1.59 12.98 -148.98 -1.93 -3.53 16 19 C -0.13 0.38 4.82 30.60 0.15 0.53 16 20 C -0.10 -0.51 4.84 30.60 0.15 -0.36 16 21 C -0.18 0.10 10.38 67.30 0.70 0.80 16 22 S 0.19 0.24 20.20 -56.49 -1.14 -0.90 16 23 H 0.41 -4.19 8.74 -74.06 -0.65 -4.84 16 24 H 0.10 -0.37 7.96 -2.39 -0.02 -0.39 16 25 H -0.27 -0.56 7.11 99.48 0.71 0.14 16 26 H -0.26 -0.02 7.11 99.48 0.71 0.68 16 27 H 0.14 1.51 8.06 -2.91 -0.02 1.49 16 28 H 0.41 -2.27 5.36 -92.71 -0.50 -2.77 16 29 H 0.06 0.54 7.58 -2.39 -0.02 0.52 16 30 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.06 0.05 8.14 -2.39 -0.02 0.03 16 32 H 0.07 -0.10 7.60 -2.39 -0.02 -0.12 16 33 H 0.09 -0.58 8.14 -2.39 -0.02 -0.60 16 34 H 0.09 -0.83 8.14 -2.39 -0.02 -0.85 16 35 H 0.08 -0.77 6.51 -2.39 -0.02 -0.78 16 36 H 0.09 -0.45 8.14 -2.39 -0.02 -0.47 16 37 H 0.06 0.06 8.14 -2.39 -0.02 0.04 16 38 H 0.09 -0.57 8.14 -2.39 -0.02 -0.59 16 39 H 0.39 -2.14 9.05 -74.06 -0.67 -2.81 16 40 H 0.08 -0.51 8.14 -2.39 -0.02 -0.53 16 41 H 0.06 -0.02 8.14 -2.38 -0.02 -0.04 16 42 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 43 H 0.06 0.42 8.14 -2.38 -0.02 0.40 16 44 H 0.21 -1.81 7.01 -2.91 -0.02 -1.83 16 Total: 0.00 -23.14 348.63 -2.98 -26.12 By element: Atomic # 1 Polarization: -11.66 SS G_CDS: -0.73 Total: -12.38 kcal Atomic # 6 Polarization: 4.29 SS G_CDS: 2.56 Total: 6.85 kcal Atomic # 7 Polarization: -0.76 SS G_CDS: -1.87 Total: -2.63 kcal Atomic # 8 Polarization: -12.35 SS G_CDS: -3.92 Total: -16.27 kcal Atomic # 14 Polarization: -2.91 SS G_CDS: 2.12 Total: -0.78 kcal Atomic # 16 Polarization: 0.24 SS G_CDS: -1.14 Total: -0.90 kcal Total: -23.14 -2.98 -26.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_15142604_6894386.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.496 kcal (2) G-P(sol) polarization free energy of solvation -23.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds