Wall clock time and date at job start Thu Mar 4 2021 13:14:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 N 1.28470 * 124.88534 * 2 1 4 4 C 1.31811 * 110.07174 * 180.16139 * 3 2 1 5 5 C 1.47710 * 126.51577 * 179.81970 * 4 3 2 6 6 O 1.21573 * 119.99890 * 179.68618 * 5 4 3 7 7 N 1.34783 * 119.99884 * 359.68005 * 5 4 3 8 8 C 1.46499 * 119.99531 * 180.02562 * 7 5 4 9 9 H 1.08997 * 112.91343 * 23.75029 * 8 7 5 10 10 C 1.53781 * 113.61225 * 155.00207 * 8 7 5 11 11 C 1.53786 * 87.17350 * 139.93836 * 10 8 7 12 12 H 1.09000 * 113.61138 * 220.06261 * 11 10 8 13 13 N 1.46496 * 113.61518 * 89.15486 * 11 10 8 14 14 C 1.36888 * 126.39324 * 119.71333 * 13 11 10 15 15 C 1.34670 * 106.81400 * 179.84249 * 14 13 11 16 16 N 1.34123 * 108.02082 * 0.42179 * 15 14 13 17 17 C 1.30495 * 109.25781 * 359.73302 * 16 15 14 18 18 C 1.53782 * 113.61191 * 252.49880 * 8 7 5 19 19 C 1.41499 * 106.96212 * 359.55108 * 4 3 2 20 20 C 1.35035 * 124.88291 * 179.65537 * 2 1 3 21 21 C 1.50699 * 126.38792 * 0.02562 * 20 2 1 22 22 O 1.42897 * 109.47281 * 330.00102 * 21 20 2 23 23 Si 1.86296 * 109.47232 * 210.00219 * 21 20 2 24 24 H 1.08997 * 109.47616 * 270.34255 * 1 2 3 25 25 H 1.09000 * 109.47434 * 30.34606 * 1 2 3 26 26 H 1.09004 * 109.47303 * 150.34212 * 1 2 3 27 27 H 0.96997 * 119.99692 * 0.02562 * 7 5 4 28 28 H 1.09002 * 113.61445 * 254.52836 * 10 8 7 29 29 H 1.09002 * 113.61408 * 25.34566 * 10 8 7 30 30 H 1.08002 * 126.59256 * 359.97438 * 14 13 11 31 31 H 1.07995 * 125.98571 * 180.12007 * 15 14 13 32 32 H 1.08001 * 125.65244 * 180.02562 * 17 16 15 33 33 H 1.08997 * 113.61668 * 334.56642 * 18 8 7 34 34 H 1.08994 * 113.61387 * 105.47377 * 18 8 7 35 35 H 1.08004 * 127.24445 * 180.26384 * 19 4 3 36 36 H 1.09000 * 109.46777 * 90.00197 * 21 20 2 37 37 H 0.96701 * 114.00268 * 300.00327 * 22 21 20 38 38 H 1.48503 * 110.00136 * 180.02562 * 23 21 20 39 39 H 1.48505 * 110.00005 * 301.31685 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1997 1.0538 0.0000 4 6 3.4740 0.7168 -0.0035 5 6 4.6273 1.6398 -0.0084 6 8 5.7597 1.1976 -0.0055 7 7 4.4240 2.9722 -0.0162 8 6 5.5679 3.8875 -0.0216 9 1 6.4733 3.4328 -0.4234 10 6 5.2508 5.2660 -0.6251 11 6 6.1132 5.8704 0.4956 12 1 5.7017 6.7877 0.9166 13 7 7.5309 5.9890 0.1460 14 6 8.2604 7.1461 0.0938 15 6 9.5123 6.8015 -0.2635 16 7 9.5439 5.4716 -0.4341 17 6 8.3606 4.9782 -0.1905 18 6 5.7841 4.6111 1.3180 19 6 3.5271 -0.6971 0.0047 20 6 2.2372 -1.1077 0.0067 21 6 1.7533 -2.5349 0.0147 22 8 0.4952 -2.6075 0.6883 23 14 2.9941 -3.6063 0.8996 24 1 -0.3634 0.0061 1.0276 25 1 -0.3634 0.8868 -0.5192 26 1 -0.3634 -0.8931 -0.5085 27 1 3.5205 3.3249 -0.0182 28 1 5.6659 5.4119 -1.6224 29 1 4.1975 5.5389 -0.5610 30 1 7.9016 8.1434 0.3015 31 1 10.3437 7.4782 -0.3949 32 1 8.0898 3.9342 -0.2481 33 1 4.8769 4.7057 1.9146 34 1 6.6297 4.2284 1.8894 35 1 4.4108 -1.3181 0.0086 36 1 1.6371 -2.8848 -1.0110 37 1 0.5238 -2.3107 1.6082 38 1 2.5288 -5.0165 0.9139 39 1 4.3152 -3.5147 0.2275 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_15608530_13259642.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 13:14:15 Heat of formation + Delta-G solvation = 119.882496 kcal Electronic energy + Delta-G solvation = -24256.961302 eV Core-core repulsion = 20591.811441 eV Total energy + Delta-G solvation = -3665.149860 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 304.132 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.87705 -43.25514 -40.97038 -39.29956 -38.02691 -35.13213 -34.38032 -32.95830 -32.42182 -30.26963 -28.69556 -27.00314 -26.93821 -26.17513 -24.20337 -22.47763 -22.31137 -21.98315 -21.32002 -20.70912 -19.17522 -18.08302 -17.63388 -17.60810 -17.36562 -17.01561 -16.35112 -16.04386 -15.84162 -15.73250 -15.56160 -15.27640 -15.15033 -15.03013 -14.82285 -14.03073 -13.96310 -13.72371 -13.56318 -13.53377 -13.44643 -13.10290 -12.63943 -12.38941 -12.21507 -11.90866 -11.83960 -11.36690 -10.95839 -10.93835 -10.58026 -10.35583 -10.06078 -9.99754 -9.49120 -4.99023 0.39105 0.77438 1.05271 1.17814 1.52784 1.69445 1.75940 1.95623 2.05815 2.17606 2.22256 3.08708 3.16635 3.29372 3.33225 3.34359 3.61438 3.66299 3.84285 3.98678 4.00984 4.27117 4.29729 4.34803 4.37414 4.41726 4.48450 4.58477 4.59118 4.59514 4.73785 4.74848 4.75561 4.83977 4.96222 5.17122 5.30563 5.35887 5.64870 5.80406 6.23017 6.32037 6.56122 6.78675 7.05468 7.10717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.257 5.257 3 N -0.256 5.256 4 C -0.038 4.038 5 C 0.604 3.396 6 O -0.569 6.569 7 N -0.692 5.692 8 C 0.106 3.894 9 H 0.097 0.903 10 C -0.137 4.137 11 C 0.109 3.891 12 H 0.153 0.847 13 N -0.440 5.440 14 C -0.037 4.037 15 C -0.065 4.065 16 N -0.539 5.539 17 C 0.166 3.834 18 C -0.147 4.147 19 C -0.199 4.199 20 C -0.006 4.006 21 C -0.033 4.033 22 O -0.542 6.542 23 Si 0.787 3.213 24 H 0.111 0.889 25 H 0.101 0.899 26 H 0.114 0.886 27 H 0.420 0.580 28 H 0.075 0.925 29 H 0.138 0.862 30 H 0.211 0.789 31 H 0.179 0.821 32 H 0.205 0.795 33 H 0.131 0.869 34 H 0.068 0.932 35 H 0.158 0.842 36 H 0.128 0.872 37 H 0.398 0.602 38 H -0.282 1.282 39 H -0.293 1.293 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.296 2.833 4.052 12.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.047 5.047 3 N -0.094 5.094 4 C -0.196 4.196 5 C 0.389 3.611 6 O -0.447 6.447 7 N -0.343 5.343 8 C 0.001 3.999 9 H 0.115 0.885 10 C -0.175 4.175 11 C 0.006 3.994 12 H 0.171 0.829 13 N -0.123 5.123 14 C -0.170 4.170 15 C -0.212 4.212 16 N -0.258 5.258 17 C -0.116 4.116 18 C -0.186 4.186 19 C -0.228 4.228 20 C -0.131 4.131 21 C -0.145 4.145 22 O -0.350 6.350 23 Si 0.691 3.309 24 H 0.129 0.871 25 H 0.119 0.881 26 H 0.133 0.867 27 H 0.258 0.742 28 H 0.094 0.906 29 H 0.156 0.844 30 H 0.228 0.772 31 H 0.196 0.804 32 H 0.221 0.779 33 H 0.149 0.851 34 H 0.087 0.913 35 H 0.175 0.825 36 H 0.145 0.855 37 H 0.249 0.751 38 H -0.208 1.208 39 H -0.220 1.220 Dipole moment (debyes) X Y Z Total from point charges -10.469 2.102 3.231 11.156 hybrid contribution -0.206 -0.047 -0.587 0.624 sum -10.674 2.056 2.644 11.187 Atomic orbital electron populations 1.22684 0.70220 1.06603 1.06681 1.45727 1.09117 1.01618 1.48211 1.73452 1.02298 1.14603 1.19049 1.21711 0.91069 0.94051 1.12788 1.17116 0.86300 0.82412 0.75234 1.90805 1.24124 1.77882 1.51861 1.45650 1.10778 1.04277 1.73565 1.22895 0.90208 0.88984 0.97827 0.88538 1.23799 1.02817 0.92381 0.98519 1.22422 0.77155 1.02052 0.97819 0.82932 1.45479 1.10181 1.06981 1.49618 1.23270 0.92530 0.92554 1.08690 1.22739 0.98348 0.91939 1.08140 1.70269 1.22673 1.11133 1.21765 1.25145 0.86007 0.96247 1.04180 1.23936 1.04241 0.93503 0.96965 1.21623 0.97314 0.93942 1.09885 1.22098 0.90582 0.92301 1.08146 1.24757 0.94626 0.92032 1.03064 1.86481 1.28687 1.88833 1.30976 0.93226 0.73464 0.75751 0.88492 0.87088 0.88083 0.86749 0.74237 0.90594 0.84381 0.77216 0.80375 0.77885 0.85103 0.91284 0.82480 0.85533 0.75087 1.20828 1.22030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 -0.74 10.12 127.77 1.29 0.56 16 2 N -0.26 0.51 3.70 -355.94 -1.32 -0.81 16 3 N -0.26 -0.46 11.67 -48.18 -0.56 -1.03 16 4 C -0.04 -0.21 7.13 42.46 0.30 0.09 16 5 C 0.60 4.41 7.83 86.75 0.68 5.09 16 6 O -0.57 -8.51 16.53 -3.95 -0.07 -8.57 16 7 N -0.69 0.34 5.35 -443.02 -2.37 -2.03 16 8 C 0.11 -0.20 3.74 45.52 0.17 -0.03 16 9 H 0.10 0.35 4.97 -2.39 -0.01 0.34 16 10 C -0.14 0.99 7.53 31.12 0.23 1.23 16 11 C 0.11 -0.72 4.89 45.58 0.22 -0.50 16 12 H 0.15 -1.88 8.14 -2.39 -0.02 -1.90 16 13 N -0.44 -0.45 2.94 -503.48 -1.48 -1.93 16 14 C -0.04 -0.04 11.58 83.09 0.96 0.92 16 15 C -0.07 -0.48 11.87 83.52 0.99 0.51 16 16 N -0.54 -7.14 11.25 -200.32 -2.25 -9.39 16 17 C 0.17 1.27 11.19 180.27 2.02 3.28 16 18 C -0.15 0.77 7.30 31.18 0.23 0.99 16 19 C -0.20 -0.88 9.35 22.41 0.21 -0.67 16 20 C -0.01 0.01 6.18 41.40 0.26 0.26 16 21 C -0.03 0.17 2.87 71.24 0.20 0.37 16 22 O -0.54 4.45 10.40 -148.98 -1.55 2.90 16 23 Si 0.79 -3.03 31.37 68.60 2.15 -0.88 16 24 H 0.11 -1.54 8.14 -2.39 -0.02 -1.55 16 25 H 0.10 -1.08 8.14 -2.39 -0.02 -1.10 16 26 H 0.11 -1.18 6.77 -2.38 -0.02 -1.20 16 27 H 0.42 -2.15 8.45 -92.71 -0.78 -2.94 16 28 H 0.08 -0.30 8.14 -2.39 -0.02 -0.32 16 29 H 0.14 -1.77 8.12 -2.39 -0.02 -1.79 16 30 H 0.21 -1.47 8.06 -2.91 -0.02 -1.50 16 31 H 0.18 0.65 8.06 -2.91 -0.02 0.63 16 32 H 0.20 1.21 5.87 -2.91 -0.02 1.19 16 33 H 0.13 -1.24 8.14 -2.39 -0.02 -1.26 16 34 H 0.07 -0.05 8.03 -2.39 -0.02 -0.07 16 35 H 0.16 0.86 6.84 -2.91 -0.02 0.84 16 36 H 0.13 -0.63 7.96 -2.39 -0.02 -0.65 16 37 H 0.40 -6.14 8.70 -74.06 -0.64 -6.78 16 38 H -0.28 -0.51 7.11 99.48 0.71 0.20 16 39 H -0.29 -1.03 6.83 99.48 0.68 -0.35 16 Total: 0.00 -27.86 331.26 0.02 -27.84 By element: Atomic # 1 Polarization: -17.90 SS G_CDS: -0.31 Total: -18.21 kcal Atomic # 6 Polarization: 4.34 SS G_CDS: 7.77 Total: 12.11 kcal Atomic # 7 Polarization: -7.21 SS G_CDS: -7.99 Total: -15.19 kcal Atomic # 8 Polarization: -4.06 SS G_CDS: -1.61 Total: -5.67 kcal Atomic # 14 Polarization: -3.03 SS G_CDS: 2.15 Total: -0.88 kcal Total: -27.86 0.02 -27.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_15608530_13259642.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.727 kcal (2) G-P(sol) polarization free energy of solvation -27.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.845 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds