Wall clock time and date at job start Thu Mar 4 2021 16:08:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.33809 * 122.44810 * 2 1 4 4 C 1.50705 * 124.52614 * 359.97438 * 3 2 1 5 5 O 1.42898 * 109.46821 * 30.00445 * 4 3 2 6 6 Si 1.86292 * 109.46982 * 150.00115 * 4 3 2 7 7 S 1.70622 * 110.95451 * 180.02562 * 3 2 1 8 8 C 1.75834 * 91.56062 * 359.83208 * 7 3 2 9 9 C 1.46585 * 125.45914 * 180.20182 * 8 7 3 10 10 O 1.21704 * 119.99825 * 180.09704 * 9 8 7 11 11 N 1.34769 * 119.99803 * 0.10366 * 9 8 7 12 12 C 1.46505 * 120.00229 * 180.02562 * 11 9 8 13 13 H 1.09001 * 112.84214 * 336.19269 * 12 11 9 14 14 C 1.53778 * 113.61580 * 107.49822 * 12 11 9 15 15 C 1.53780 * 87.08310 * 89.11879 * 14 12 11 16 16 F 1.39899 * 113.68854 * 270.87501 * 15 14 12 17 17 C 1.52997 * 113.61427 * 139.97729 * 15 14 12 18 18 N 1.46499 * 109.46717 * 87.50530 * 17 15 14 19 19 C 1.34778 * 119.99657 * 179.97438 * 18 17 15 20 20 O 1.21505 * 120.00471 * 359.97438 * 19 18 17 21 21 O 1.34642 * 119.99702 * 180.02562 * 19 18 17 22 22 C 1.45206 * 116.99949 * 180.02562 * 21 19 18 23 23 C 1.53008 * 109.47009 * 59.99584 * 22 21 19 24 24 C 1.52999 * 109.47342 * 179.97438 * 22 21 19 25 25 C 1.52996 * 109.46919 * 300.00125 * 22 21 19 26 26 C 1.53771 * 113.61597 * 204.99806 * 12 11 9 27 27 C 1.36649 * 109.08528 * 0.29190 * 8 7 3 28 28 H 1.08997 * 109.47523 * 270.00132 * 1 2 3 29 29 H 1.09003 * 109.47275 * 30.00344 * 1 2 3 30 30 H 1.09003 * 109.47441 * 149.99966 * 1 2 3 31 31 H 1.08999 * 109.47344 * 270.00378 * 4 3 2 32 32 H 0.96701 * 114.00698 * 59.99389 * 5 4 3 33 33 H 1.48505 * 109.99958 * 180.02562 * 6 4 3 34 34 H 1.48497 * 110.00110 * 301.32016 * 6 4 3 35 35 H 0.97002 * 120.00344 * 359.97438 * 11 9 8 36 36 H 1.09007 * 113.61463 * 203.66913 * 14 12 11 37 37 H 1.09002 * 113.61715 * 334.56653 * 14 12 11 38 38 H 1.08999 * 109.47173 * 207.49893 * 17 15 14 39 39 H 1.09000 * 109.47342 * 327.50521 * 17 15 14 40 40 H 0.96999 * 120.00076 * 359.97438 * 18 17 15 41 41 H 1.09005 * 109.46870 * 60.00379 * 23 22 21 42 42 H 1.08995 * 109.46688 * 179.97438 * 23 22 21 43 43 H 1.09002 * 109.47201 * 300.00338 * 23 22 21 44 44 H 1.09001 * 109.46425 * 59.99806 * 24 22 21 45 45 H 1.09000 * 109.47100 * 179.97438 * 24 22 21 46 46 H 1.08998 * 109.47029 * 300.00307 * 24 22 21 47 47 H 1.09002 * 109.47350 * 59.99626 * 25 22 21 48 48 H 1.09004 * 109.46899 * 180.02562 * 25 22 21 49 49 H 1.09003 * 109.47228 * 299.99359 * 25 22 21 50 50 H 1.09000 * 113.61903 * 25.43018 * 26 12 11 51 51 H 1.09005 * 113.61744 * 156.33334 * 26 12 11 52 52 H 1.08002 * 123.35574 * 179.97438 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2250 1.1292 0.0000 4 6 1.6355 2.5162 -0.0006 5 8 0.3752 2.4983 0.6727 6 14 2.7922 3.6828 0.8778 7 16 3.8970 0.7892 -0.0007 8 6 3.5937 -0.9428 0.0041 9 6 4.6231 -1.9863 0.0101 10 8 4.3000 -3.1597 0.0113 11 7 5.9272 -1.6464 0.0144 12 6 6.9561 -2.6893 0.0198 13 1 6.5975 -3.6354 0.4254 14 6 7.6953 -2.8324 -1.3211 15 6 8.6854 -1.7784 -0.7980 16 9 8.3113 -0.4623 -1.0894 17 6 10.1428 -2.0753 -1.1567 18 7 10.4480 -1.5047 -2.4710 19 6 11.6819 -1.6427 -2.9954 20 8 12.5412 -2.2399 -2.3780 21 8 11.9626 -1.1179 -4.2032 22 6 13.3118 -1.3055 -4.7060 23 6 13.6066 -2.8019 -4.8293 24 6 13.4402 -0.6460 -6.0806 25 6 14.3101 -0.6672 -3.7382 26 6 8.2955 -2.2301 0.6194 27 6 2.2446 -1.1601 -0.0006 28 1 -0.3634 0.0000 1.0276 29 1 -0.3634 0.8900 -0.5139 30 1 -0.3634 -0.8900 -0.5138 31 1 1.4937 2.8503 -1.0283 32 1 0.4255 2.2100 1.5944 33 1 2.2220 5.0540 0.8846 34 1 3.0188 3.2205 2.2706 35 1 6.1847 -0.7112 0.0131 36 1 8.1423 -3.8153 -1.4706 37 1 7.1127 -2.4964 -2.1789 38 1 10.7989 -1.6326 -0.4072 39 1 10.2979 -3.1538 -1.1839 40 1 9.7621 -1.0276 -2.9638 41 1 12.8954 -3.2567 -5.5188 42 1 14.6192 -2.9427 -5.2072 43 1 13.5151 -3.2721 -3.8502 44 1 13.2300 0.4200 -5.9930 45 1 14.4531 -0.7865 -6.4578 46 1 12.7289 -1.1011 -6.7698 47 1 14.2186 -1.1374 -2.7591 48 1 15.3229 -0.8076 -4.1160 49 1 14.1002 0.3988 -3.6504 50 1 8.1977 -1.4079 1.3282 51 1 8.9068 -3.0483 1.0005 52 1 1.8018 -2.1452 0.0007 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_15734490_6739946.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 16:08:48 Heat of formation + Delta-G solvation = -135.122680 kcal Electronic energy + Delta-G solvation = -35636.230272 eV Core-core repulsion = 30644.709841 eV Total energy + Delta-G solvation = -4991.520430 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 401.155 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -48.91927 -41.81559 -41.22637 -40.07598 -39.19834 -38.33381 -37.41569 -36.00652 -35.00426 -34.25177 -32.11236 -30.25062 -29.27477 -28.36316 -28.30086 -27.07729 -26.64284 -24.78367 -23.92412 -22.83946 -22.02049 -21.33880 -20.69545 -20.13002 -19.54951 -19.28987 -17.85704 -17.84458 -17.44708 -17.39265 -17.14679 -16.86279 -16.67034 -16.58731 -16.40020 -16.00806 -15.88442 -15.66123 -15.44543 -15.27289 -15.06253 -14.71317 -14.52644 -14.45949 -14.41820 -13.96030 -13.86314 -13.63051 -13.51491 -13.36469 -13.17959 -13.10930 -13.06045 -13.00027 -12.91599 -12.86986 -12.73719 -12.47473 -12.42361 -12.34953 -12.25052 -11.85168 -11.63198 -11.40701 -11.37580 -11.33428 -11.14357 -10.89757 -10.36099 -10.27955 -9.69793 -9.39832 -5.12698 -0.68897 0.28899 0.69992 1.05419 1.10093 1.30180 1.52896 1.71770 1.86221 1.88220 2.01303 2.92527 2.99765 3.16143 3.22448 3.24552 3.51697 3.57581 3.61604 3.72249 3.74180 3.79599 3.94461 4.08558 4.26993 4.32660 4.36774 4.48841 4.50658 4.55956 4.58260 4.61785 4.62708 4.65937 4.74616 4.76952 4.80254 4.82427 4.84702 4.87344 4.87760 4.88320 4.90406 4.99205 5.05444 5.19789 5.27414 5.33523 5.36581 5.42043 5.43227 5.55174 6.26059 6.29043 6.35335 6.95162 7.27459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.109 4.109 3 C -0.236 4.236 4 C -0.037 4.037 5 O -0.529 6.529 6 Si 0.734 3.266 7 S 0.259 5.741 8 C -0.289 4.289 9 C 0.595 3.405 10 O -0.566 6.566 11 N -0.701 5.701 12 C 0.110 3.890 13 H 0.109 0.891 14 C -0.162 4.162 15 C 0.084 3.916 16 F -0.190 7.190 17 C 0.131 3.869 18 N -0.702 5.702 19 C 0.646 3.354 20 O -0.590 6.590 21 O -0.370 6.370 22 C 0.127 3.873 23 C -0.180 4.180 24 C -0.139 4.139 25 C -0.180 4.180 26 C -0.141 4.141 27 C -0.056 4.056 28 H 0.075 0.925 29 H 0.081 0.919 30 H 0.062 0.938 31 H 0.142 0.858 32 H 0.388 0.612 33 H -0.275 1.275 34 H -0.274 1.274 35 H 0.410 0.590 36 H 0.131 0.869 37 H 0.079 0.921 38 H 0.084 0.916 39 H 0.102 0.898 40 H 0.415 0.585 41 H 0.061 0.939 42 H 0.086 0.914 43 H 0.065 0.935 44 H 0.069 0.931 45 H 0.099 0.901 46 H 0.069 0.931 47 H 0.065 0.935 48 H 0.087 0.913 49 H 0.061 0.939 50 H 0.100 0.900 51 H 0.145 0.855 52 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.453 3.256 -0.860 4.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.121 4.121 3 C -0.356 4.356 4 C -0.148 4.148 5 O -0.337 6.337 6 Si 0.635 3.365 7 S 0.528 5.472 8 C -0.409 4.409 9 C 0.383 3.617 10 O -0.447 6.447 11 N -0.352 5.352 12 C 0.005 3.995 13 H 0.127 0.873 14 C -0.201 4.201 15 C 0.065 3.935 16 F -0.170 7.170 17 C 0.008 3.992 18 N -0.362 5.362 19 C 0.399 3.601 20 O -0.481 6.481 21 O -0.285 6.285 22 C 0.091 3.909 23 C -0.237 4.237 24 C -0.196 4.196 25 C -0.237 4.237 26 C -0.179 4.179 27 C -0.091 4.091 28 H 0.094 0.906 29 H 0.100 0.900 30 H 0.081 0.919 31 H 0.159 0.841 32 H 0.238 0.762 33 H -0.200 1.200 34 H -0.199 1.199 35 H 0.247 0.753 36 H 0.149 0.851 37 H 0.098 0.902 38 H 0.102 0.898 39 H 0.120 0.880 40 H 0.252 0.748 41 H 0.080 0.920 42 H 0.105 0.895 43 H 0.084 0.916 44 H 0.088 0.912 45 H 0.117 0.883 46 H 0.088 0.912 47 H 0.084 0.916 48 H 0.106 0.894 49 H 0.080 0.920 50 H 0.119 0.881 51 H 0.163 0.837 52 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 3.962 3.856 -0.525 5.554 hybrid contribution -2.485 -0.762 0.504 2.648 sum 1.477 3.094 -0.022 3.429 Atomic orbital electron populations 1.20610 0.88202 1.03205 1.03043 1.18761 0.98883 0.90524 1.03959 1.24689 0.99481 1.00971 1.10480 1.24631 0.91121 0.94572 1.04450 1.86620 1.27929 1.89228 1.29955 0.94680 0.83515 0.76870 0.81413 1.82507 1.01594 0.95803 1.67264 1.24621 0.97699 0.98547 1.20035 1.17124 0.82314 0.87085 0.75222 1.90830 1.82260 1.19823 1.51762 1.45536 1.04413 1.10704 1.74542 1.21974 0.87531 0.92568 0.97445 0.87290 1.24218 0.96832 1.00619 0.98411 1.22236 0.93214 0.78713 0.99301 1.92849 1.92430 1.37384 1.94371 1.21902 0.93732 1.00836 0.82690 1.44534 1.10400 1.60101 1.21215 1.18245 0.83563 0.77908 0.80342 1.90914 1.47130 1.47077 1.62991 1.86319 1.36365 1.73045 1.32751 1.22371 0.76862 0.96736 0.94959 1.22478 1.03456 0.94403 1.03374 1.21898 1.04173 1.01258 0.92225 1.22476 0.99778 1.00918 1.00550 1.24001 0.94831 1.04529 0.94566 1.20765 0.91279 1.00242 0.96775 0.90587 0.90002 0.91874 0.84098 0.76239 1.20026 1.19901 0.75277 0.85116 0.90235 0.89774 0.87954 0.74829 0.91970 0.89469 0.91580 0.91220 0.88278 0.91230 0.91621 0.89446 0.91987 0.88103 0.83710 0.83646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 0.07 8.67 71.24 0.62 0.68 16 2 C -0.11 -0.13 5.75 -21.05 -0.12 -0.25 16 3 C -0.24 0.35 5.53 24.68 0.14 0.49 16 4 C -0.04 0.13 2.76 71.24 0.20 0.33 16 5 O -0.53 0.93 9.85 -148.98 -1.47 -0.54 16 6 Si 0.73 -3.06 31.31 68.60 2.15 -0.91 16 7 S 0.26 -0.83 19.80 -56.49 -1.12 -1.95 16 8 C -0.29 -0.91 6.45 24.08 0.16 -0.75 16 9 C 0.59 3.34 7.78 86.42 0.67 4.01 16 10 O -0.57 -7.48 16.44 -4.36 -0.07 -7.55 16 11 N -0.70 0.59 5.18 -444.10 -2.30 -1.71 16 12 C 0.11 -0.40 4.32 45.51 0.20 -0.20 16 13 H 0.11 -0.11 7.46 -2.39 -0.02 -0.13 16 14 C -0.16 0.92 7.32 31.12 0.23 1.15 16 15 C 0.08 -0.55 1.73 -10.27 -0.02 -0.57 16 16 F -0.19 0.69 15.50 44.97 0.70 1.38 16 17 C 0.13 -0.60 5.42 86.38 0.47 -0.13 16 18 N -0.70 0.44 5.45 -590.85 -3.22 -2.78 16 19 C 0.65 3.50 8.06 129.79 1.05 4.55 16 20 O -0.59 -5.89 11.88 19.82 0.24 -5.65 16 21 O -0.37 -1.83 9.94 -55.52 -0.55 -2.38 16 22 C 0.13 0.29 1.13 -10.79 -0.01 0.27 16 23 C -0.18 -0.41 8.37 71.98 0.60 0.19 16 24 C -0.14 0.34 8.85 71.98 0.64 0.98 16 25 C -0.18 -0.43 8.37 71.98 0.60 0.17 16 26 C -0.14 1.26 7.28 31.12 0.23 1.48 16 27 C -0.06 -0.22 9.80 21.72 0.21 -0.01 16 28 H 0.08 -0.18 8.14 -2.39 -0.02 -0.20 16 29 H 0.08 0.00 6.41 -2.39 -0.02 -0.01 16 30 H 0.06 -0.04 8.13 -2.39 -0.02 -0.06 16 31 H 0.14 -0.83 7.96 -2.39 -0.02 -0.84 16 32 H 0.39 -2.46 8.66 -74.06 -0.64 -3.10 16 33 H -0.27 -0.61 7.11 99.48 0.71 0.09 16 34 H -0.27 -0.11 7.11 99.48 0.71 0.60 16 35 H 0.41 -1.70 6.89 -92.71 -0.64 -2.34 16 36 H 0.13 -1.12 7.90 -2.38 -0.02 -1.14 16 37 H 0.08 -0.24 8.14 -2.39 -0.02 -0.26 16 38 H 0.08 -0.32 8.14 -2.39 -0.02 -0.34 16 39 H 0.10 -0.60 7.84 -2.39 -0.02 -0.62 16 40 H 0.42 -1.19 8.14 -92.71 -0.75 -1.94 16 41 H 0.06 0.11 8.14 -2.38 -0.02 0.09 16 42 H 0.09 -0.09 8.14 -2.39 -0.02 -0.11 16 43 H 0.07 0.47 5.88 -2.39 -0.01 0.45 16 44 H 0.07 -0.18 8.14 -2.39 -0.02 -0.20 16 45 H 0.10 -0.57 8.14 -2.39 -0.02 -0.59 16 46 H 0.07 -0.18 8.14 -2.39 -0.02 -0.20 16 47 H 0.06 0.48 5.88 -2.39 -0.01 0.47 16 48 H 0.09 -0.09 8.14 -2.39 -0.02 -0.11 16 49 H 0.06 0.12 8.14 -2.39 -0.02 0.10 16 50 H 0.10 -0.95 8.14 -2.39 -0.02 -0.97 16 51 H 0.14 -1.89 8.10 -2.38 -0.02 -1.91 16 52 H 0.15 0.71 8.06 -2.91 -0.02 0.69 16 Total: 0.00 -21.45 434.07 -0.82 -22.27 By element: Atomic # 1 Polarization: -11.57 SS G_CDS: -1.01 Total: -12.58 kcal Atomic # 6 Polarization: 6.55 SS G_CDS: 5.85 Total: 12.40 kcal Atomic # 7 Polarization: 1.03 SS G_CDS: -5.52 Total: -4.50 kcal Atomic # 8 Polarization: -14.26 SS G_CDS: -1.86 Total: -16.11 kcal Atomic # 9 Polarization: 0.69 SS G_CDS: 0.70 Total: 1.38 kcal Atomic # 14 Polarization: -3.06 SS G_CDS: 2.15 Total: -0.91 kcal Atomic # 16 Polarization: -0.83 SS G_CDS: -1.12 Total: -1.95 kcal Total: -21.45 -0.82 -22.27 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_15734490_6739946.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.852 kcal (2) G-P(sol) polarization free energy of solvation -21.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds