Wall clock time and date at job start Thu Mar 4 2021 12:58:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86304 * 109.46535 * 2 1 4 4 H 1.48504 * 109.46936 * 299.99885 * 3 2 1 5 5 H 1.48497 * 109.47562 * 59.99883 * 3 2 1 6 6 H 1.48502 * 109.46782 * 180.02562 * 3 2 1 7 7 C 1.50693 * 109.47336 * 240.00259 * 2 1 3 8 8 C 1.34449 * 126.48507 * 104.96987 * 7 2 1 9 9 N 1.36568 * 109.98566 * 180.02562 * 8 7 2 10 10 C 1.37834 * 109.85926 * 0.02562 * 9 8 7 11 11 C 1.38647 * 133.37509 * 180.32902 * 10 9 8 12 12 C 1.39323 * 119.66150 * 180.18048 * 11 10 9 13 13 C 1.47578 * 119.83218 * 179.72415 * 12 11 10 14 14 O 1.21593 * 119.99995 * 359.72872 * 13 12 11 15 15 N 1.34777 * 120.00056 * 179.73027 * 13 12 11 16 16 C 1.46498 * 119.99828 * 180.27917 * 15 13 12 17 17 C 1.52572 * 108.90585 * 276.08970 * 16 15 13 18 18 C 1.54425 * 109.15951 * 161.40030 * 17 16 15 19 19 Si 1.85204 * 107.00128 * 56.84689 * 18 17 16 20 20 C 1.87768 * 111.38210 * 81.14758 * 19 18 17 21 21 C 1.56400 * 98.96206 * 98.20134 * 20 19 18 22 22 C 1.53773 * 109.78952 * 39.36828 * 21 20 19 23 23 C 1.55687 * 111.39558 * 312.19444 * 22 21 20 24 24 C 1.85201 * 110.01574 * 317.14622 * 19 18 17 25 25 C 1.52571 * 108.90509 * 153.35094 * 16 15 13 26 26 C 1.40200 * 120.33596 * 359.45556 * 12 11 10 27 27 C 1.36237 * 120.38030 * 0.26633 * 26 12 11 28 28 C 1.39880 * 119.95628 * 0.02562 * 27 26 12 29 29 H 0.96698 * 114.00405 * 60.00753 * 1 2 3 30 30 H 1.08989 * 109.47170 * 119.99381 * 2 1 3 31 31 H 1.07997 * 125.01004 * 0.04149 * 8 7 2 32 32 H 0.97002 * 125.07197 * 179.97438 * 9 8 7 33 33 H 1.08000 * 120.16977 * 359.92443 * 11 10 9 34 34 H 0.97001 * 119.99727 * 359.97438 * 15 13 12 35 35 H 1.08998 * 108.88851 * 34.72330 * 16 15 13 36 36 H 1.09001 * 109.51776 * 281.40635 * 17 16 15 37 37 H 1.09000 * 109.51332 * 41.56849 * 17 16 15 38 38 H 1.08996 * 110.01317 * 297.45227 * 18 17 16 39 39 H 1.08999 * 109.99100 * 176.23092 * 18 17 16 40 40 H 1.08996 * 111.49798 * 215.63893 * 20 19 18 41 41 H 1.09005 * 111.49459 * 340.76444 * 20 19 18 42 42 H 1.09000 * 109.41359 * 279.27196 * 21 20 19 43 43 H 1.09001 * 109.41381 * 159.46705 * 21 20 19 44 44 H 1.09000 * 109.10004 * 191.68222 * 22 21 20 45 45 H 1.08994 * 109.10097 * 72.70812 * 22 21 20 46 46 H 1.08998 * 111.14474 * 270.08747 * 23 22 21 47 47 H 1.08996 * 111.18350 * 145.88773 * 23 22 21 48 48 H 1.08996 * 109.93664 * 283.40315 * 24 19 18 49 49 H 1.09000 * 110.00456 * 162.22262 * 24 19 18 50 50 H 1.08999 * 109.51541 * 318.42354 * 25 16 15 51 51 H 1.09001 * 109.51752 * 78.53786 * 25 16 15 52 52 H 1.08002 * 119.81159 * 180.29515 * 26 12 11 53 53 H 1.07992 * 120.02051 * 179.97438 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7566 0.0000 4 1 1.5548 2.4565 -1.2126 5 1 1.5548 2.4566 1.2124 6 1 3.5349 1.7566 -0.0006 7 6 1.9314 -0.7103 -1.2304 8 6 2.4612 -0.1362 -2.3247 9 7 2.8027 -1.0946 -3.2357 10 6 2.4937 -2.3430 -2.7401 11 6 2.6350 -3.6281 -3.2410 12 6 2.2118 -4.7154 -2.4795 13 6 2.3548 -6.0844 -3.0115 14 8 2.8365 -6.2610 -4.1139 15 7 1.9515 -7.1390 -2.2755 16 6 2.0992 -8.4984 -2.8012 17 6 0.9057 -8.8141 -3.6978 18 6 1.2587 -10.0099 -4.6089 19 14 1.7387 -11.4130 -3.4994 20 6 0.2276 -12.2997 -2.8242 21 6 0.1795 -13.4981 -3.8280 22 6 1.6071 -13.9876 -4.1232 23 6 2.5567 -12.8003 -4.4584 24 6 2.8266 -10.7970 -2.1331 25 6 2.2169 -9.4707 -1.6313 26 6 1.6558 -4.5158 -1.2080 27 6 1.5185 -3.2568 -0.7059 28 6 1.9331 -2.1547 -1.4609 29 1 -0.3934 0.4416 -0.7651 30 1 1.7923 -0.5137 0.8899 31 1 2.5969 0.9263 -2.4628 32 1 3.2024 -0.9223 -4.1026 33 1 3.0672 -3.7853 -4.2182 34 1 1.5676 -6.9981 -1.3960 35 1 3.0111 -8.5496 -3.3960 36 1 0.0434 -9.0664 -3.0807 37 1 0.6725 -7.9451 -4.3129 38 1 2.0927 -9.7491 -5.2604 39 1 0.3925 -10.2899 -5.2086 40 1 0.3887 -12.6414 -1.8017 41 1 -0.6659 -11.6798 -2.8991 42 1 -0.2918 -13.1746 -4.7560 43 1 -0.4001 -14.3122 -3.3928 44 1 1.5810 -14.6736 -4.9698 45 1 1.9906 -14.5158 -3.2503 46 1 2.5606 -12.5899 -5.5278 47 1 3.5664 -12.9884 -4.0934 48 1 3.8345 -10.6235 -2.5100 49 1 2.8537 -11.5241 -1.3214 50 1 2.8609 -9.0410 -0.8641 51 1 1.2280 -9.6588 -1.2132 52 1 1.3349 -5.3650 -0.6230 53 1 1.0891 -3.1097 0.2740 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_15739290_12335838.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 12:58:53 Heat of formation + Delta-G solvation = -59.007212 kcal Electronic energy + Delta-G solvation = -30928.892790 eV Core-core repulsion = 26888.292941 eV Total energy + Delta-G solvation = -4040.599849 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 372.178 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -42.46337 -41.04949 -38.26389 -37.67685 -37.36358 -36.13244 -34.01460 -33.23379 -32.05536 -30.71844 -30.58662 -29.66830 -27.10020 -26.37290 -24.86688 -24.21314 -23.68611 -23.50369 -21.69886 -21.33682 -20.88014 -20.74957 -19.37654 -18.40899 -17.79001 -17.19839 -16.94280 -16.32284 -16.14315 -16.05546 -15.93865 -15.79101 -15.68196 -15.40417 -15.17626 -14.93584 -14.81885 -14.77253 -14.56233 -14.25803 -14.17312 -13.68611 -13.37000 -13.21599 -13.10778 -13.06229 -12.79253 -12.65273 -12.40486 -12.36680 -12.22738 -12.18433 -12.10315 -12.02129 -11.92373 -11.70694 -11.68688 -11.34149 -11.09264 -10.77877 -10.35745 -10.29179 -10.25811 -10.16988 -10.05261 -9.36404 -8.79290 -0.31926 0.38885 1.27167 1.37734 1.52248 1.61401 1.80178 1.91603 1.92400 1.93565 1.98933 2.01273 2.27776 2.68917 2.88614 3.59718 3.65320 3.74774 3.78788 3.86669 3.92345 4.07821 4.13214 4.15135 4.16746 4.21765 4.30691 4.33904 4.42706 4.48367 4.51762 4.55379 4.61660 4.65777 4.67260 4.72087 4.81261 4.83836 4.86943 4.99369 5.12085 5.14512 5.16715 5.21765 5.22920 5.25766 5.28925 5.37312 5.39244 5.43262 5.46927 5.48743 5.54122 5.56343 5.61978 5.62581 5.98786 6.49802 6.51825 6.84571 7.18137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.557 6.557 2 C -0.045 4.045 3 Si 0.986 3.014 4 H -0.241 1.241 5 H -0.277 1.277 6 H -0.260 1.260 7 C -0.226 4.226 8 C 0.077 3.923 9 N -0.579 5.579 10 C 0.066 3.934 11 C -0.071 4.071 12 C -0.135 4.135 13 C 0.559 3.441 14 O -0.583 6.583 15 N -0.709 5.709 16 C 0.133 3.867 17 C -0.116 4.116 18 C -0.423 4.423 19 Si 1.054 2.946 20 C -0.408 4.408 21 C -0.128 4.128 22 C -0.123 4.123 23 C -0.426 4.426 24 C -0.411 4.411 25 C -0.114 4.114 26 C -0.108 4.108 27 C -0.080 4.080 28 C -0.079 4.079 29 H 0.386 0.614 30 H 0.114 0.886 31 H 0.202 0.798 32 H 0.433 0.567 33 H 0.125 0.875 34 H 0.415 0.585 35 H 0.068 0.932 36 H 0.087 0.913 37 H 0.040 0.960 38 H 0.065 0.935 39 H 0.080 0.920 40 H 0.086 0.914 41 H 0.082 0.918 42 H 0.061 0.939 43 H 0.063 0.937 44 H 0.054 0.946 45 H 0.065 0.935 46 H 0.070 0.930 47 H 0.080 0.920 48 H 0.076 0.924 49 H 0.097 0.903 50 H 0.078 0.922 51 H 0.094 0.906 52 H 0.155 0.845 53 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.894 1.983 3.415 4.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.364 6.364 2 C -0.156 4.156 3 Si 0.809 3.191 4 H -0.164 1.164 5 H -0.202 1.202 6 H -0.184 1.184 7 C -0.233 4.233 8 C -0.052 4.052 9 N -0.182 5.182 10 C -0.040 4.040 11 C -0.092 4.092 12 C -0.139 4.139 13 C 0.348 3.652 14 O -0.464 6.464 15 N -0.360 5.360 16 C 0.028 3.972 17 C -0.155 4.155 18 C -0.507 4.507 19 Si 1.244 2.756 20 C -0.494 4.494 21 C -0.165 4.165 22 C -0.160 4.160 23 C -0.511 4.511 24 C -0.497 4.497 25 C -0.152 4.152 26 C -0.128 4.128 27 C -0.098 4.098 28 C -0.084 4.084 29 H 0.235 0.765 30 H 0.132 0.868 31 H 0.219 0.781 32 H 0.273 0.727 33 H 0.143 0.857 34 H 0.253 0.747 35 H 0.086 0.914 36 H 0.106 0.894 37 H 0.059 0.941 38 H 0.084 0.916 39 H 0.098 0.902 40 H 0.105 0.895 41 H 0.101 0.899 42 H 0.080 0.920 43 H 0.082 0.918 44 H 0.073 0.927 45 H 0.084 0.916 46 H 0.089 0.911 47 H 0.099 0.901 48 H 0.094 0.906 49 H 0.116 0.884 50 H 0.097 0.903 51 H 0.113 0.887 52 H 0.172 0.828 53 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -0.092 2.448 3.050 3.912 hybrid contribution -0.042 -0.167 -1.186 1.199 sum -0.134 2.281 1.863 2.948 Atomic orbital electron populations 1.86481 1.18037 1.82063 1.49817 1.24380 0.84249 1.10199 0.96742 0.85228 0.79371 0.73743 0.80757 1.16358 1.20174 1.18399 1.20899 1.11672 0.91711 0.99048 1.22260 0.98592 0.95518 0.88813 1.41789 1.54301 1.03394 1.18748 1.18147 1.03831 0.86677 0.95388 1.20115 1.00146 0.88885 1.00084 1.19508 1.05889 0.91736 0.96806 1.18413 0.76981 0.85529 0.84311 1.90760 1.46846 1.86799 1.22044 1.45967 1.63176 1.05583 1.21319 1.21190 0.99065 0.80818 0.96087 1.21697 0.98092 0.98005 0.97670 1.26426 1.05560 1.10893 1.07834 0.78822 0.66623 0.64225 0.65903 1.26724 1.15011 1.04932 1.02701 1.22075 0.96610 0.98600 0.99254 1.21880 0.94517 0.98242 1.01383 1.26701 1.04018 1.12450 1.07917 1.26192 1.08639 1.01233 1.13675 1.21605 1.03383 0.94095 0.96112 1.20939 0.99611 0.98287 0.93932 1.20452 0.98683 0.90433 1.00269 1.19533 1.01007 0.94138 0.93727 0.76487 0.86835 0.78127 0.72733 0.85690 0.74698 0.91386 0.89410 0.94068 0.91617 0.90155 0.89513 0.89884 0.91985 0.91814 0.92687 0.91638 0.91097 0.90114 0.90555 0.88395 0.90299 0.88720 0.82796 0.83747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 0.13 12.88 -148.98 -1.92 -1.79 16 2 C -0.05 0.09 3.06 71.23 0.22 0.31 16 3 Si 0.99 -4.03 26.08 68.60 1.79 -2.24 16 4 H -0.24 1.51 7.03 99.48 0.70 2.21 16 5 H -0.28 -0.09 7.11 99.48 0.71 0.61 16 6 H -0.26 0.67 7.11 99.48 0.71 1.37 16 7 C -0.23 -0.02 5.57 -18.65 -0.10 -0.12 16 8 C 0.08 -0.25 10.43 83.09 0.87 0.61 16 9 N -0.58 0.92 6.07 -187.71 -1.14 -0.22 16 10 C 0.07 0.28 7.26 38.95 0.28 0.56 16 11 C -0.07 -0.47 9.61 22.63 0.22 -0.26 16 12 C -0.14 -0.77 5.87 -20.08 -0.12 -0.89 16 13 C 0.56 4.59 7.55 86.71 0.65 5.25 16 14 O -0.58 -9.58 15.96 -4.01 -0.06 -9.65 16 15 N -0.71 -0.79 4.97 -447.01 -2.22 -3.01 16 16 C 0.13 0.13 1.98 44.71 0.09 0.22 16 17 C -0.12 -0.17 5.24 30.94 0.16 -0.01 16 18 C -0.42 -0.22 4.96 72.47 0.36 0.14 16 19 Si 1.05 -4.39 10.56 68.60 0.72 -3.67 16 20 C -0.41 1.43 5.95 73.17 0.44 1.87 16 21 C -0.13 0.11 5.97 32.04 0.19 0.30 16 22 C -0.12 0.01 6.10 31.78 0.19 0.20 16 23 C -0.43 0.31 5.84 72.91 0.43 0.73 16 24 C -0.41 1.90 4.95 72.44 0.36 2.26 16 25 C -0.11 0.54 5.11 30.91 0.16 0.69 16 26 C -0.11 -0.08 9.46 22.28 0.21 0.13 16 27 C -0.08 -0.15 10.03 22.20 0.22 0.07 16 28 C -0.08 -0.31 6.35 -20.14 -0.13 -0.43 16 29 H 0.39 -2.59 8.70 -74.06 -0.64 -3.23 16 30 H 0.11 -0.29 7.96 -2.39 -0.02 -0.31 16 31 H 0.20 -2.01 6.29 -2.91 -0.02 -2.03 16 32 H 0.43 -2.99 8.96 -92.71 -0.83 -3.82 16 33 H 0.13 0.95 7.62 -2.91 -0.02 0.93 16 34 H 0.41 -2.22 6.58 -92.71 -0.61 -2.83 16 35 H 0.07 0.40 7.23 -2.39 -0.02 0.39 16 36 H 0.09 -0.26 7.75 -2.39 -0.02 -0.28 16 37 H 0.04 0.30 7.95 -2.39 -0.02 0.28 16 38 H 0.06 0.23 7.97 -2.39 -0.02 0.21 16 39 H 0.08 0.02 7.97 -2.39 -0.02 0.00 16 40 H 0.09 -0.41 8.04 -2.39 -0.02 -0.43 16 41 H 0.08 -0.34 8.04 -2.38 -0.02 -0.36 16 42 H 0.06 -0.05 8.14 -2.39 -0.02 -0.07 16 43 H 0.06 -0.04 8.14 -2.39 -0.02 -0.06 16 44 H 0.05 0.05 8.14 -2.39 -0.02 0.04 16 45 H 0.06 -0.06 8.14 -2.39 -0.02 -0.08 16 46 H 0.07 0.03 8.03 -2.39 -0.02 0.02 16 47 H 0.08 -0.10 8.03 -2.39 -0.02 -0.12 16 48 H 0.08 -0.24 7.97 -2.39 -0.02 -0.26 16 49 H 0.10 -0.65 7.97 -2.39 -0.02 -0.67 16 50 H 0.08 -0.41 8.13 -2.39 -0.02 -0.43 16 51 H 0.09 -0.81 7.76 -2.39 -0.02 -0.83 16 52 H 0.15 -0.95 6.36 -2.91 -0.02 -0.97 16 53 H 0.14 -0.19 8.06 -2.91 -0.02 -0.22 16 Total: 0.00 -21.34 414.99 1.47 -19.87 By element: Atomic # 1 Polarization: -10.54 SS G_CDS: -0.40 Total: -10.93 kcal Atomic # 6 Polarization: 6.94 SS G_CDS: 4.70 Total: 11.64 kcal Atomic # 7 Polarization: 0.13 SS G_CDS: -3.36 Total: -3.23 kcal Atomic # 8 Polarization: -9.45 SS G_CDS: -1.98 Total: -11.44 kcal Atomic # 14 Polarization: -8.43 SS G_CDS: 2.51 Total: -5.91 kcal Total: -21.34 1.47 -19.87 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_15739290_12335838.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.133 kcal (2) G-P(sol) polarization free energy of solvation -21.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds