Wall clock time and date at job start Thu Mar 4 2021 13:24:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86296 * 109.47187 * 2 1 4 4 H 1.48499 * 109.47257 * 300.00121 * 3 2 1 5 5 H 1.48504 * 109.47177 * 59.99926 * 3 2 1 6 6 H 1.48500 * 109.47260 * 180.02562 * 3 2 1 7 7 C 1.50697 * 109.46866 * 239.99816 * 2 1 3 8 8 C 1.37935 * 119.92548 * 299.99842 * 7 2 1 9 9 C 1.39601 * 119.87630 * 180.02562 * 8 7 2 10 10 C 1.47846 * 120.13894 * 179.97438 * 9 8 7 11 11 O 1.21553 * 120.00154 * 359.97438 * 10 9 8 12 12 N 1.34777 * 119.99557 * 179.97438 * 10 9 8 13 13 C 1.46499 * 119.99665 * 179.72375 * 12 10 9 14 14 C 1.52574 * 108.90749 * 276.64860 * 13 12 10 15 15 C 1.54426 * 109.16032 * 161.40146 * 14 13 12 16 16 Si 1.85200 * 107.00192 * 56.84546 * 15 14 13 17 17 C 1.87767 * 111.38515 * 81.14959 * 16 15 14 18 18 C 1.56399 * 98.96279 * 98.19880 * 17 16 15 19 19 C 1.53776 * 109.79013 * 39.36997 * 18 17 16 20 20 C 1.55688 * 111.39278 * 312.19686 * 19 18 17 21 21 C 1.85206 * 110.01808 * 317.14340 * 16 15 14 22 22 C 1.52567 * 108.90987 * 153.91060 * 13 12 10 23 23 C 1.39545 * 119.71903 * 0.25397 * 9 8 7 24 24 C 1.38075 * 119.83989 * 359.44619 * 23 9 8 25 25 Br 1.89101 * 119.93672 * 180.29568 * 24 23 9 26 26 C 1.38369 * 119.91874 * 119.98220 * 7 2 1 27 27 H 0.96695 * 113.99783 * 59.99931 * 1 2 3 28 28 H 1.09004 * 109.47458 * 119.99630 * 2 1 3 29 29 H 1.07998 * 120.06555 * 0.02562 * 8 7 2 30 30 H 0.97001 * 120.00485 * 0.02562 * 12 10 9 31 31 H 1.09002 * 108.88701 * 35.27741 * 13 12 10 32 32 H 1.08996 * 109.51462 * 281.39956 * 14 13 12 33 33 H 1.08996 * 109.51446 * 41.56798 * 14 13 12 34 34 H 1.09002 * 110.01025 * 297.44618 * 15 14 13 35 35 H 1.09001 * 109.99397 * 176.22836 * 15 14 13 36 36 H 1.08997 * 111.49630 * 215.64146 * 17 16 15 37 37 H 1.08995 * 111.49132 * 340.76224 * 17 16 15 38 38 H 1.08995 * 109.41646 * 279.27270 * 18 17 16 39 39 H 1.08993 * 109.41619 * 159.46572 * 18 17 16 40 40 H 1.08998 * 109.10736 * 191.68427 * 19 18 17 41 41 H 1.09003 * 109.09990 * 72.70460 * 19 18 17 42 42 H 1.08997 * 111.14294 * 270.07854 * 20 19 18 43 43 H 1.08998 * 111.18220 * 145.88751 * 20 19 18 44 44 H 1.09000 * 109.93979 * 283.41371 * 21 16 15 45 45 H 1.09003 * 110.00647 * 162.22115 * 21 16 15 46 46 H 1.09013 * 109.50999 * 318.42869 * 22 13 12 47 47 H 1.08997 * 109.51618 * 78.53366 * 22 13 12 48 48 H 1.08001 * 120.07938 * 179.74855 * 23 9 8 49 49 H 1.07999 * 119.85729 * 359.97438 * 26 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 1 1.5550 2.4565 -1.2125 5 1 1.5550 2.4565 1.2125 6 1 3.5350 1.7564 -0.0006 7 6 1.9313 -0.7104 -1.2304 8 6 1.5971 -2.0310 -1.4471 9 6 2.0634 -2.6883 -2.5870 10 6 1.7092 -4.1039 -2.8248 11 8 1.0110 -4.6981 -2.0266 12 7 2.1605 -4.7355 -3.9265 13 6 1.8146 -6.1400 -4.1590 14 6 2.7847 -7.0235 -3.3805 15 6 2.1750 -8.4342 -3.2284 16 14 1.8186 -9.0570 -4.9358 17 6 3.3632 -9.7497 -5.7482 18 6 3.1276 -11.2694 -5.4636 19 6 1.6380 -11.6075 -5.6411 20 6 0.7307 -10.5828 -4.8990 21 6 1.0649 -7.7089 -5.9579 22 6 1.8559 -6.4176 -5.6587 23 6 2.8700 -2.0053 -3.4982 24 6 3.1922 -0.6817 -3.2729 25 35 4.2782 0.2489 -4.5100 26 6 2.7263 -0.0363 -2.1404 27 1 -0.3933 0.4417 -0.7650 28 1 1.7924 -0.5138 0.8900 29 1 0.9759 -2.5556 -0.7363 30 1 2.7180 -4.2615 -4.5633 31 1 0.8032 -6.3193 -3.7944 32 1 3.7297 -7.0897 -3.9195 33 1 2.9567 -6.5939 -2.3936 34 1 1.2515 -8.3812 -2.6518 35 1 2.8852 -9.0957 -2.7323 36 1 3.3795 -9.5414 -6.8180 37 1 4.2679 -9.3875 -5.2599 38 1 3.4319 -11.4982 -4.4423 39 1 3.7196 -11.8643 -6.1590 40 1 1.4487 -12.6048 -5.2440 41 1 1.3939 -11.5963 -6.7034 42 1 0.5342 -10.9010 -3.8752 43 1 -0.1998 -10.4154 -5.4414 44 1 0.0184 -7.5755 -5.6839 45 1 1.1432 -7.9556 -7.0168 46 1 1.4065 -5.5824 -6.1961 47 1 2.8908 -6.5412 -5.9777 48 1 3.2373 -2.5093 -4.3799 49 1 2.9845 0.9978 -1.9663 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_15739290_12335870.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 13:24:17 Heat of formation + Delta-G solvation = -85.202986 kcal Electronic energy + Delta-G solvation = -28293.911239 eV Core-core repulsion = 24389.773264 eV Total energy + Delta-G solvation = -3904.137975 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 411.078 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.66397 -40.21657 -37.96250 -37.64432 -36.13896 -34.40314 -33.62967 -32.67365 -32.06662 -30.48124 -29.67522 -27.41980 -26.92236 -25.09033 -24.44118 -23.59791 -22.81260 -21.72740 -21.36348 -20.87082 -19.15055 -18.07233 -17.73184 -17.37105 -16.65631 -16.43663 -16.19657 -16.06118 -15.88568 -15.70596 -15.54502 -15.18064 -15.04617 -14.93539 -14.72892 -14.19542 -14.15999 -13.68187 -13.37752 -13.30638 -13.23256 -13.08981 -13.02760 -12.82013 -12.39913 -12.28984 -12.19637 -12.14978 -12.11114 -11.98053 -11.93495 -11.78574 -11.71856 -11.48923 -11.34884 -11.19202 -10.58335 -10.42679 -10.30576 -10.24378 -10.17817 -10.04376 -9.92203 -0.53674 -0.17421 0.39377 1.08237 1.41676 1.45997 1.53813 1.78767 1.87368 1.91829 1.95598 2.02531 2.46756 2.68153 3.26484 3.34535 3.53871 3.73528 3.78074 3.86154 3.94598 4.05280 4.13160 4.15919 4.18984 4.21765 4.30708 4.32777 4.42009 4.50942 4.57671 4.62108 4.66475 4.71211 4.73829 4.81421 4.84023 4.92326 5.06321 5.11457 5.13885 5.15959 5.21703 5.24121 5.26736 5.32820 5.37110 5.38451 5.46275 5.49991 5.55095 5.60337 6.39679 6.64132 7.06770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.550 6.550 2 C -0.080 4.080 3 Si 0.970 3.030 4 H -0.244 1.244 5 H -0.269 1.269 6 H -0.249 1.249 7 C -0.115 4.115 8 C -0.026 4.026 9 C -0.135 4.135 10 C 0.558 3.442 11 O -0.570 6.570 12 N -0.709 5.709 13 C 0.132 3.868 14 C -0.117 4.117 15 C -0.422 4.422 16 Si 1.052 2.948 17 C -0.408 4.408 18 C -0.128 4.128 19 C -0.123 4.123 20 C -0.427 4.427 21 C -0.410 4.410 22 C -0.115 4.115 23 C -0.045 4.045 24 C -0.099 4.099 25 Br -0.031 7.031 26 C -0.075 4.075 27 H 0.391 0.609 28 H 0.130 0.870 29 H 0.136 0.864 30 H 0.414 0.586 31 H 0.071 0.929 32 H 0.088 0.912 33 H 0.043 0.957 34 H 0.066 0.934 35 H 0.080 0.920 36 H 0.086 0.914 37 H 0.083 0.917 38 H 0.062 0.938 39 H 0.063 0.937 40 H 0.054 0.946 41 H 0.064 0.936 42 H 0.070 0.930 43 H 0.080 0.920 44 H 0.077 0.923 45 H 0.097 0.903 46 H 0.079 0.921 47 H 0.094 0.906 48 H 0.163 0.837 49 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.815 1.534 -4.670 5.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.357 6.357 2 C -0.191 4.191 3 Si 0.792 3.208 4 H -0.167 1.167 5 H -0.194 1.194 6 H -0.173 1.173 7 C -0.117 4.117 8 C -0.046 4.046 9 C -0.139 4.139 10 C 0.345 3.655 11 O -0.450 6.450 12 N -0.360 5.360 13 C 0.028 3.972 14 C -0.155 4.155 15 C -0.507 4.507 16 Si 1.243 2.757 17 C -0.494 4.494 18 C -0.166 4.166 19 C -0.161 4.161 20 C -0.512 4.512 21 C -0.497 4.497 22 C -0.153 4.153 23 C -0.065 4.065 24 C -0.179 4.179 25 Br 0.055 6.945 26 C -0.094 4.094 27 H 0.240 0.760 28 H 0.148 0.852 29 H 0.154 0.846 30 H 0.252 0.748 31 H 0.089 0.911 32 H 0.106 0.894 33 H 0.062 0.938 34 H 0.085 0.915 35 H 0.099 0.901 36 H 0.104 0.896 37 H 0.101 0.899 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.073 0.927 41 H 0.083 0.917 42 H 0.089 0.911 43 H 0.099 0.901 44 H 0.096 0.904 45 H 0.116 0.884 46 H 0.098 0.902 47 H 0.113 0.887 48 H 0.181 0.819 49 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 3.110 2.011 -4.025 5.469 hybrid contribution -0.358 -0.508 -0.060 0.624 sum 2.752 1.503 -4.084 5.149 Atomic orbital electron populations 1.86527 1.17092 1.81915 1.50145 1.25100 0.85219 1.11038 0.97701 0.85394 0.80238 0.74168 0.80981 1.16704 1.19365 1.17265 1.20366 0.99108 0.94460 0.97747 1.21271 0.94725 0.93370 0.95194 1.19936 1.02466 0.93842 0.97641 1.18343 0.79321 0.86242 0.81555 1.90801 1.39444 1.68191 1.46568 1.46006 1.53053 1.13146 1.23838 1.21222 0.99557 0.79402 0.96978 1.21704 0.99165 0.94752 0.99918 1.26406 1.04241 1.00481 1.19530 0.78851 0.66617 0.65073 0.65196 1.26729 1.14609 1.00763 1.07303 1.22073 0.95807 0.96908 1.01765 1.21885 0.94168 0.99255 1.00756 1.26715 1.06521 1.15367 1.02567 1.26184 1.05123 1.08147 1.10263 1.21612 1.02774 0.98988 0.91892 1.21464 0.94127 0.92238 0.98661 1.21722 1.03040 0.95901 0.97208 1.96848 1.65716 1.75442 1.56525 1.21398 0.95341 1.00491 0.92204 0.76011 0.85241 0.84640 0.74806 0.91062 0.89397 0.93801 0.91476 0.90119 0.89562 0.89858 0.91967 0.91862 0.92716 0.91677 0.91087 0.90133 0.90442 0.88435 0.90198 0.88736 0.81918 0.83779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 0.04 12.76 -148.98 -1.90 -1.86 16 2 C -0.08 0.16 2.82 71.24 0.20 0.36 16 3 Si 0.97 -2.71 25.06 68.60 1.72 -0.99 16 4 H -0.24 0.82 7.11 99.48 0.71 1.52 16 5 H -0.27 -0.25 7.11 99.48 0.71 0.46 16 6 H -0.25 0.58 7.11 99.48 0.71 1.29 16 7 C -0.12 0.05 5.38 -19.91 -0.11 -0.05 16 8 C -0.03 -0.07 9.15 22.53 0.21 0.13 16 9 C -0.13 -0.22 5.87 -20.09 -0.12 -0.34 16 10 C 0.56 2.75 7.54 86.79 0.65 3.41 16 11 O -0.57 -7.69 16.00 -3.88 -0.06 -7.76 16 12 N -0.71 1.12 4.97 -446.76 -2.22 -1.10 16 13 C 0.13 -0.15 1.98 44.71 0.09 -0.06 16 14 C -0.12 0.05 5.24 30.94 0.16 0.21 16 15 C -0.42 0.36 4.96 72.47 0.36 0.72 16 16 Si 1.05 -5.41 10.56 68.60 0.72 -4.68 16 17 C -0.41 1.75 5.95 73.17 0.44 2.18 16 18 C -0.13 0.18 5.97 32.04 0.19 0.37 16 19 C -0.12 0.07 6.10 31.78 0.19 0.26 16 20 C -0.43 0.58 5.84 72.91 0.43 1.01 16 21 C -0.41 2.39 4.95 72.44 0.36 2.75 16 22 C -0.11 0.73 5.11 30.91 0.16 0.89 16 23 C -0.04 0.12 9.28 22.55 0.21 0.33 16 24 C -0.10 0.15 6.22 22.28 0.14 0.29 16 25 Br -0.03 0.06 33.69 -20.37 -0.69 -0.63 16 26 C -0.07 0.10 8.41 22.35 0.19 0.29 16 27 H 0.39 -2.64 8.70 -74.06 -0.64 -3.29 16 28 H 0.13 -0.44 7.96 -2.38 -0.02 -0.46 16 29 H 0.14 0.75 7.65 -2.91 -0.02 0.73 16 30 H 0.41 -3.32 6.63 -92.71 -0.61 -3.94 16 31 H 0.07 0.26 7.24 -2.39 -0.02 0.25 16 32 H 0.09 -0.42 7.75 -2.39 -0.02 -0.43 16 33 H 0.04 0.22 7.93 -2.39 -0.02 0.20 16 34 H 0.07 0.14 7.97 -2.39 -0.02 0.12 16 35 H 0.08 -0.08 7.97 -2.39 -0.02 -0.10 16 36 H 0.09 -0.46 8.04 -2.39 -0.02 -0.48 16 37 H 0.08 -0.41 8.04 -2.39 -0.02 -0.43 16 38 H 0.06 -0.08 8.14 -2.39 -0.02 -0.10 16 39 H 0.06 -0.07 8.14 -2.39 -0.02 -0.09 16 40 H 0.05 0.03 8.14 -2.39 -0.02 0.01 16 41 H 0.06 -0.09 8.14 -2.39 -0.02 -0.11 16 42 H 0.07 -0.01 8.03 -2.39 -0.02 -0.03 16 43 H 0.08 -0.15 8.03 -2.39 -0.02 -0.17 16 44 H 0.08 -0.35 7.97 -2.39 -0.02 -0.37 16 45 H 0.10 -0.74 7.97 -2.39 -0.02 -0.76 16 46 H 0.08 -0.56 8.13 -2.38 -0.02 -0.58 16 47 H 0.09 -0.95 7.76 -2.39 -0.02 -0.97 16 48 H 0.16 -1.38 6.40 -2.91 -0.02 -1.40 16 49 H 0.14 -0.50 4.86 -2.91 -0.01 -0.51 16 Total: 0.00 -15.70 402.74 1.78 -13.92 By element: Atomic # 1 Polarization: -10.09 SS G_CDS: 0.47 Total: -9.63 kcal Atomic # 6 Polarization: 8.99 SS G_CDS: 3.74 Total: 12.73 kcal Atomic # 7 Polarization: 1.12 SS G_CDS: -2.22 Total: -1.10 kcal Atomic # 8 Polarization: -7.65 SS G_CDS: -1.96 Total: -9.62 kcal Atomic # 14 Polarization: -8.12 SS G_CDS: 2.44 Total: -5.68 kcal Atomic # 35 Polarization: 0.06 SS G_CDS: -0.69 Total: -0.63 kcal Total: -15.70 1.78 -13.92 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_15739290_12335870.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.283 kcal (2) G-P(sol) polarization free energy of solvation -15.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds