Wall clock time and date at job start Thu Mar 4 2021 13:24:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42896 * 1 3 3 Si 1.86301 * 109.46974 * 2 1 4 4 H 1.48506 * 109.47302 * 299.99678 * 3 2 1 5 5 H 1.48503 * 109.47334 * 179.97438 * 3 2 1 6 6 H 1.48500 * 109.47376 * 59.99808 * 3 2 1 7 7 C 1.50701 * 109.47417 * 239.99877 * 2 1 3 8 8 C 1.35004 * 126.42665 * 149.68741 * 7 2 1 9 9 N 1.33587 * 108.65456 * 179.83695 * 8 7 2 10 10 C 1.32419 * 109.22142 * 0.43301 * 9 8 7 11 11 C 1.41251 * 132.12097 * 179.70545 * 10 9 8 12 12 Br 1.89102 * 120.24963 * 0.05937 * 11 10 9 13 13 C 1.35702 * 119.49226 * 180.02562 * 11 10 9 14 14 C 1.41758 * 119.52975 * 0.02562 * 13 11 10 15 15 C 1.47576 * 120.00644 * 180.02562 * 14 13 11 16 16 O 1.21591 * 120.00213 * 180.02562 * 15 14 13 17 17 N 1.34783 * 120.00318 * 0.02562 * 15 14 13 18 18 C 1.46493 * 120.00427 * 180.02562 * 17 15 14 19 19 C 1.52566 * 108.90859 * 276.37200 * 18 17 15 20 20 C 1.54422 * 109.16397 * 161.39544 * 19 18 17 21 21 Si 1.85212 * 107.00006 * 56.84439 * 20 19 18 22 22 C 1.87769 * 111.38142 * 81.14624 * 21 20 19 23 23 C 1.56395 * 98.95919 * 98.20095 * 22 21 20 24 24 C 1.53774 * 109.78864 * 39.37297 * 23 22 21 25 25 C 1.55683 * 111.39447 * 312.18784 * 24 23 22 26 26 C 1.85207 * 110.01380 * 317.14989 * 21 20 19 27 27 C 1.52571 * 108.90933 * 153.62674 * 18 17 15 28 28 C 1.36495 * 119.98531 * 0.02562 * 14 13 11 29 29 N 1.35940 * 120.50290 * 359.97438 * 28 14 13 30 30 H 0.96708 * 114.00095 * 60.00047 * 1 2 3 31 31 H 1.09002 * 109.47509 * 119.99862 * 2 1 3 32 32 H 1.07995 * 125.67809 * 359.96383 * 8 7 2 33 33 H 1.07996 * 120.23292 * 179.97438 * 13 11 10 34 34 H 0.96997 * 119.99549 * 359.97438 * 17 15 14 35 35 H 1.09006 * 108.88221 * 35.00277 * 18 17 15 36 36 H 1.08995 * 109.51530 * 281.40124 * 19 18 17 37 37 H 1.08999 * 109.51368 * 41.56215 * 19 18 17 38 38 H 1.09003 * 110.01630 * 297.45167 * 20 19 18 39 39 H 1.08996 * 109.99190 * 176.22212 * 20 19 18 40 40 H 1.08998 * 111.49598 * 215.64437 * 22 21 20 41 41 H 1.09002 * 111.49773 * 340.76369 * 22 21 20 42 42 H 1.08998 * 109.41956 * 279.27183 * 23 22 21 43 43 H 1.09001 * 109.41547 * 159.46820 * 23 22 21 44 44 H 1.09000 * 109.10056 * 191.68039 * 24 23 22 45 45 H 1.08995 * 109.10475 * 72.70487 * 24 23 22 46 46 H 1.09001 * 111.15038 * 270.09210 * 25 24 23 47 47 H 1.09005 * 111.18247 * 145.89172 * 25 24 23 48 48 H 1.09002 * 109.93222 * 283.39837 * 26 21 20 49 49 H 1.09002 * 110.00227 * 162.22345 * 26 21 20 50 50 H 1.08996 * 109.51258 * 318.42929 * 27 18 17 51 51 H 1.08999 * 109.51469 * 78.59468 * 27 18 17 52 52 H 1.07994 * 119.74676 * 180.02562 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 1 1.5550 2.4565 -1.2126 5 1 3.5350 1.7566 0.0006 6 1 1.5549 2.4566 1.2125 7 6 1.9314 -0.7104 -1.2304 8 6 3.0827 -0.4572 -1.8883 9 7 3.1767 -1.2962 -2.9236 10 6 2.1071 -2.0764 -2.9510 11 6 1.7124 -3.1126 -3.8260 12 35 2.8132 -3.5986 -5.2848 13 6 0.5376 -3.7570 -3.6114 14 6 -0.2755 -3.3802 -2.5131 15 6 -1.5549 -4.0743 -2.2696 16 8 -2.2525 -3.7508 -1.3277 17 7 -1.9501 -5.0670 -3.0911 18 6 -3.2204 -5.7557 -2.8498 19 6 -2.9993 -6.8509 -1.8108 20 6 -4.3609 -7.2596 -1.2076 21 14 -5.4409 -7.7872 -2.6167 22 6 -5.0752 -9.5545 -3.1351 23 6 -6.2292 -10.2776 -2.3662 24 6 -7.5126 -9.4338 -2.4399 25 6 -7.2329 -7.9429 -2.0899 26 6 -5.2487 -6.6137 -4.0366 27 6 -3.7415 -6.3098 -4.1723 28 6 0.1251 -2.3752 -1.6808 29 7 1.3019 -1.7294 -1.8955 30 1 -0.3934 0.4417 -0.7651 31 1 1.7924 -0.5138 0.8900 32 1 3.8083 0.2967 -1.6209 33 1 0.2240 -4.5507 -4.2732 34 1 -1.3938 -5.3249 -3.8427 35 1 -3.9419 -5.0382 -2.4587 36 1 -2.5355 -7.7152 -2.2860 37 1 -2.3493 -6.4767 -1.0200 38 1 -4.8105 -6.4108 -0.6923 39 1 -4.2266 -8.0879 -0.5120 40 1 -5.1718 -9.6826 -4.2132 41 1 -4.0959 -9.8794 -2.7834 42 1 -5.9422 -10.4104 -1.3231 43 1 -6.4102 -11.2529 -2.8181 44 1 -8.2435 -9.8341 -1.7374 45 1 -7.9210 -9.4930 -3.4488 46 1 -7.3455 -7.7620 -1.0209 47 1 -7.8721 -7.2759 -2.6685 48 1 -5.7968 -5.6934 -3.8349 49 1 -5.6191 -7.0734 -4.9530 50 1 -3.5881 -5.5735 -4.9612 51 1 -3.2059 -7.2264 -4.4194 52 1 -0.4972 -2.0916 -0.8450 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_15739290_12335884.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 13:24:31 Heat of formation + Delta-G solvation = -15.561873 kcal Electronic energy + Delta-G solvation = -33840.615227 eV Core-core repulsion = 29396.655396 eV Total energy + Delta-G solvation = -4443.959831 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 451.084 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -44.28524 -41.31899 -38.74923 -38.11534 -37.70787 -36.12895 -35.37964 -34.13882 -32.40988 -32.03318 -31.78700 -30.26222 -29.66050 -27.34878 -26.85976 -25.24567 -24.53779 -24.10961 -23.56925 -22.58205 -21.75641 -21.68419 -20.86662 -19.51151 -18.71521 -18.25384 -17.80163 -17.54224 -17.06865 -16.44174 -16.30644 -16.10945 -15.95981 -15.87975 -15.77070 -15.62759 -15.34911 -15.11972 -14.93473 -14.77233 -14.45584 -14.16965 -13.70646 -13.42946 -13.38665 -13.33007 -13.20803 -13.08453 -13.02406 -12.80441 -12.70968 -12.37395 -12.16755 -12.11713 -12.09132 -12.06964 -11.92247 -11.69119 -11.55175 -11.36304 -11.34992 -11.33833 -11.24637 -10.88191 -10.38827 -10.28508 -10.16406 -10.12981 -9.99068 -9.09874 -0.90777 -0.38577 0.18366 0.88355 1.11765 1.35809 1.50719 1.56896 1.76704 1.80744 1.92422 1.95009 1.98157 2.04093 2.23833 2.70417 2.79355 3.06778 3.17995 3.37884 3.46935 3.48376 3.76022 3.84499 4.06076 4.13996 4.15096 4.16994 4.22015 4.27536 4.36074 4.38337 4.42808 4.44656 4.50657 4.54965 4.66671 4.67740 4.72235 4.84679 4.88363 4.95461 5.12729 5.14754 5.19749 5.23167 5.24718 5.27468 5.29836 5.35197 5.38767 5.49219 5.51389 5.55695 5.56594 5.62209 6.36078 6.36705 6.47226 7.02249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.551 6.551 2 C -0.052 4.052 3 Si 1.012 2.988 4 H -0.261 1.261 5 H -0.237 1.237 6 H -0.261 1.261 7 C -0.084 4.084 8 C 0.029 3.971 9 N -0.495 5.495 10 C 0.225 3.775 11 C -0.081 4.081 12 Br 0.005 6.995 13 C -0.023 4.023 14 C -0.169 4.169 15 C 0.576 3.424 16 O -0.563 6.563 17 N -0.704 5.704 18 C 0.134 3.866 19 C -0.118 4.118 20 C -0.421 4.421 21 Si 1.053 2.947 22 C -0.410 4.410 23 C -0.128 4.128 24 C -0.123 4.123 25 C -0.428 4.428 26 C -0.410 4.410 27 C -0.116 4.116 28 C 0.159 3.841 29 N -0.356 5.356 30 H 0.389 0.611 31 H 0.138 0.862 32 H 0.211 0.789 33 H 0.187 0.813 34 H 0.415 0.585 35 H 0.076 0.924 36 H 0.087 0.913 37 H 0.046 0.954 38 H 0.069 0.931 39 H 0.079 0.921 40 H 0.085 0.915 41 H 0.082 0.918 42 H 0.061 0.939 43 H 0.061 0.939 44 H 0.053 0.947 45 H 0.064 0.936 46 H 0.070 0.930 47 H 0.080 0.920 48 H 0.078 0.922 49 H 0.096 0.904 50 H 0.082 0.918 51 H 0.094 0.906 52 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.556 -1.505 -2.291 3.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.357 6.357 2 C -0.161 4.161 3 Si 0.831 3.169 4 H -0.185 1.185 5 H -0.160 1.160 6 H -0.185 1.185 7 C -0.195 4.195 8 C -0.120 4.120 9 N -0.214 5.214 10 C -0.020 4.020 11 C -0.164 4.164 12 Br 0.091 6.909 13 C -0.048 4.048 14 C -0.177 4.177 15 C 0.363 3.637 16 O -0.443 6.443 17 N -0.356 5.356 18 C 0.030 3.970 19 C -0.157 4.157 20 C -0.506 4.506 21 Si 1.244 2.756 22 C -0.496 4.496 23 C -0.166 4.166 24 C -0.161 4.161 25 C -0.513 4.513 26 C -0.497 4.497 27 C -0.154 4.154 28 C 0.033 3.967 29 N -0.030 5.030 30 H 0.239 0.761 31 H 0.155 0.845 32 H 0.227 0.773 33 H 0.204 0.796 34 H 0.254 0.746 35 H 0.094 0.906 36 H 0.106 0.894 37 H 0.065 0.935 38 H 0.088 0.912 39 H 0.098 0.902 40 H 0.103 0.897 41 H 0.101 0.899 42 H 0.080 0.920 43 H 0.080 0.920 44 H 0.072 0.928 45 H 0.083 0.917 46 H 0.089 0.911 47 H 0.099 0.901 48 H 0.097 0.903 49 H 0.114 0.886 50 H 0.100 0.900 51 H 0.113 0.887 52 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -0.552 -0.870 -2.114 2.352 hybrid contribution -0.914 -0.285 0.424 1.047 sum -1.465 -1.155 -1.690 2.518 Atomic orbital electron populations 1.86500 1.17400 1.81527 1.50322 1.25066 0.84797 1.11504 0.94744 0.84838 0.80679 0.70928 0.80443 1.18508 1.16042 1.18473 1.22457 0.98046 0.96448 1.02547 1.22924 0.96895 1.00329 0.91850 1.70815 1.20129 1.08036 1.22376 1.20728 0.89811 0.99866 0.91589 1.20568 0.98536 0.99311 0.97966 1.96838 1.66735 1.90497 1.36865 1.21381 0.90062 0.97925 0.95468 1.19304 0.98326 1.00932 0.99093 1.17574 0.84038 0.79859 0.82275 1.90847 1.55780 1.66498 1.31187 1.45912 1.23650 1.35040 1.30969 1.21244 0.84528 0.94367 0.96876 1.21715 0.97661 0.98544 0.97740 1.26380 1.05437 1.05476 1.13281 0.78842 0.64692 0.66286 0.65813 1.26757 1.00045 1.19138 1.03645 1.22075 0.94521 0.99419 1.00574 1.21884 0.97850 0.94673 1.01696 1.26733 1.21462 0.98133 1.04927 1.26167 0.97550 1.11175 1.14774 1.21622 0.96089 1.02841 0.94831 1.22282 0.84994 0.90354 0.99058 1.42709 1.15027 1.24170 1.21058 0.76141 0.84488 0.77275 0.79604 0.74643 0.90572 0.89435 0.93513 0.91250 0.90220 0.89653 0.89879 0.91980 0.92007 0.92814 0.91747 0.91085 0.90144 0.90284 0.88562 0.89968 0.88746 0.78819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 1.04 10.90 -148.98 -1.62 -0.58 16 2 C -0.05 0.17 3.06 71.24 0.22 0.38 16 3 Si 1.01 -4.65 26.59 68.60 1.82 -2.82 16 4 H -0.26 0.63 7.11 99.48 0.71 1.33 16 5 H -0.24 1.30 6.84 99.48 0.68 1.98 16 6 H -0.26 0.47 7.11 99.48 0.71 1.18 16 7 C -0.08 -0.12 6.25 41.01 0.26 0.13 16 8 C 0.03 0.09 10.44 83.68 0.87 0.97 16 9 N -0.49 -4.25 11.30 -194.10 -2.19 -6.45 16 10 C 0.23 1.46 7.59 134.18 1.02 2.48 16 11 C -0.08 -0.21 6.24 22.42 0.14 -0.07 16 12 Br 0.01 0.01 33.72 -20.37 -0.69 -0.67 16 13 C -0.02 0.06 9.26 22.55 0.21 0.27 16 14 C -0.17 0.01 5.84 -20.35 -0.12 -0.11 16 15 C 0.58 0.85 7.54 86.71 0.65 1.50 16 16 O -0.56 -5.14 15.92 -4.00 -0.06 -5.21 16 17 N -0.70 3.21 4.97 -447.02 -2.22 0.99 16 18 C 0.13 -0.50 1.98 44.71 0.09 -0.41 16 19 C -0.12 0.31 5.24 30.93 0.16 0.47 16 20 C -0.42 1.10 4.96 72.47 0.36 1.46 16 21 Si 1.05 -6.74 10.56 68.60 0.72 -6.02 16 22 C -0.41 2.05 5.95 73.16 0.44 2.48 16 23 C -0.13 0.24 5.97 32.04 0.19 0.43 16 24 C -0.12 0.13 6.10 31.78 0.19 0.32 16 25 C -0.43 0.97 5.84 72.91 0.43 1.39 16 26 C -0.41 3.03 4.95 72.44 0.36 3.39 16 27 C -0.12 0.97 5.12 30.91 0.16 1.13 16 28 C 0.16 0.31 9.91 83.65 0.83 1.14 16 29 N -0.36 -1.31 2.93 -337.71 -0.99 -2.30 16 30 H 0.39 -2.72 8.70 -74.05 -0.64 -3.37 16 31 H 0.14 -0.74 7.96 -2.39 -0.02 -0.76 16 32 H 0.21 -0.57 6.71 -2.91 -0.02 -0.59 16 33 H 0.19 -1.91 6.44 -2.91 -0.02 -1.93 16 34 H 0.42 -4.52 6.62 -92.71 -0.61 -5.14 16 35 H 0.08 0.04 7.24 -2.38 -0.02 0.02 16 36 H 0.09 -0.58 7.75 -2.39 -0.02 -0.59 16 37 H 0.05 0.12 7.94 -2.39 -0.02 0.10 16 38 H 0.07 -0.01 7.97 -2.39 -0.02 -0.03 16 39 H 0.08 -0.19 7.97 -2.39 -0.02 -0.21 16 40 H 0.08 -0.51 8.04 -2.39 -0.02 -0.53 16 41 H 0.08 -0.47 8.04 -2.39 -0.02 -0.49 16 42 H 0.06 -0.11 8.14 -2.39 -0.02 -0.13 16 43 H 0.06 -0.08 8.14 -2.39 -0.02 -0.10 16 44 H 0.05 0.01 8.14 -2.39 -0.02 -0.01 16 45 H 0.06 -0.11 8.14 -2.39 -0.02 -0.13 16 46 H 0.07 -0.07 8.03 -2.39 -0.02 -0.09 16 47 H 0.08 -0.22 8.03 -2.38 -0.02 -0.24 16 48 H 0.08 -0.50 7.97 -2.39 -0.02 -0.52 16 49 H 0.10 -0.85 7.97 -2.39 -0.02 -0.87 16 50 H 0.08 -0.75 8.13 -2.39 -0.02 -0.77 16 51 H 0.09 -1.12 7.75 -2.39 -0.02 -1.13 16 52 H 0.20 0.39 6.19 -2.91 -0.02 0.37 16 Total: 0.00 -20.01 428.20 1.66 -18.35 By element: Atomic # 1 Polarization: -13.09 SS G_CDS: 0.44 Total: -12.65 kcal Atomic # 6 Polarization: 10.92 SS G_CDS: 6.45 Total: 17.37 kcal Atomic # 7 Polarization: -2.35 SS G_CDS: -5.41 Total: -7.76 kcal Atomic # 8 Polarization: -4.10 SS G_CDS: -1.69 Total: -5.79 kcal Atomic # 14 Polarization: -11.39 SS G_CDS: 2.55 Total: -8.84 kcal Atomic # 35 Polarization: 0.01 SS G_CDS: -0.69 Total: -0.67 kcal Total: -20.01 1.66 -18.35 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_15739290_12335884.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.789 kcal (2) G-P(sol) polarization free energy of solvation -20.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds