Wall clock time and date at job start Thu Mar 4 2021 13:25:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42904 * 1 3 3 Si 1.86304 * 109.46796 * 2 1 4 4 H 1.48493 * 109.47092 * 60.00185 * 3 2 1 5 5 H 1.48494 * 109.46785 * 180.02562 * 3 2 1 6 6 H 1.48501 * 109.46977 * 300.00064 * 3 2 1 7 7 C 1.50696 * 109.46960 * 240.00019 * 2 1 3 8 8 C 1.38183 * 119.84159 * 104.97728 * 7 2 1 9 9 C 1.38313 * 120.14539 * 179.71960 * 8 7 2 10 10 F 1.35104 * 120.08776 * 180.29639 * 9 8 7 11 11 C 1.39805 * 119.82885 * 0.52812 * 9 8 7 12 12 C 1.47698 * 120.15283 * 179.76592 * 11 9 8 13 13 O 1.21566 * 120.00053 * 359.45476 * 12 11 9 14 14 N 1.34784 * 119.99956 * 179.72478 * 12 11 9 15 15 C 1.46499 * 119.99893 * 179.72984 * 14 12 11 16 16 C 1.52570 * 108.90530 * 276.36733 * 15 14 12 17 17 C 1.54427 * 109.15924 * 161.40011 * 16 15 14 18 18 Si 1.85208 * 106.99833 * 56.84950 * 17 16 15 19 19 C 1.87759 * 111.38270 * 81.14658 * 18 17 16 20 20 C 1.56402 * 98.96414 * 98.20057 * 19 18 17 21 21 C 1.53777 * 109.78869 * 39.36554 * 20 19 18 22 22 C 1.55695 * 111.39477 * 312.19798 * 21 20 19 23 23 C 1.85196 * 110.01552 * 317.14321 * 18 17 16 24 24 C 1.52570 * 108.90476 * 153.63135 * 15 14 12 25 25 C 1.39657 * 119.69045 * 359.49716 * 11 9 8 26 26 C 1.38059 * 119.85351 * 0.24766 * 25 11 9 27 27 F 1.35100 * 119.92174 * 180.02562 * 26 25 11 28 28 H 0.96703 * 113.99978 * 299.99903 * 1 2 3 29 29 H 1.09003 * 109.47088 * 119.99839 * 2 1 3 30 30 H 1.07999 * 119.93142 * 0.02562 * 8 7 2 31 31 H 0.97005 * 119.99846 * 359.72772 * 14 12 11 32 32 H 1.08993 * 108.88633 * 34.99736 * 15 14 12 33 33 H 1.09003 * 109.51700 * 281.40607 * 16 15 14 34 34 H 1.09007 * 109.51627 * 41.56885 * 16 15 14 35 35 H 1.08997 * 110.01393 * 297.44884 * 17 16 15 36 36 H 1.09002 * 109.98806 * 176.22939 * 17 16 15 37 37 H 1.09005 * 111.49755 * 215.63815 * 19 18 17 38 38 H 1.09005 * 111.50091 * 340.76342 * 19 18 17 39 39 H 1.09002 * 109.41923 * 279.27054 * 20 19 18 40 40 H 1.08999 * 109.42368 * 159.46774 * 20 19 18 41 41 H 1.08996 * 109.10138 * 191.68992 * 21 20 19 42 42 H 1.08993 * 109.10091 * 72.70675 * 21 20 19 43 43 H 1.09000 * 111.14165 * 270.08502 * 22 21 20 44 44 H 1.08995 * 111.17912 * 145.88911 * 22 21 20 45 45 H 1.09001 * 109.93951 * 283.41134 * 23 18 17 46 46 H 1.08996 * 110.00724 * 162.22453 * 23 18 17 47 47 H 1.08995 * 109.51726 * 318.42451 * 24 15 14 48 48 H 1.09005 * 109.51808 * 78.53630 * 24 15 14 49 49 H 1.08007 * 120.07030 * 180.22554 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 1 1.5550 2.4565 1.2125 5 1 3.5349 1.7565 -0.0006 6 1 1.5549 2.4565 -1.2125 7 6 1.9313 -0.7104 -1.2304 8 6 2.4526 0.0199 -2.2814 9 6 2.9207 -0.6261 -3.4113 10 9 3.4356 0.0887 -4.4357 11 6 2.8552 -2.0202 -3.4927 12 6 3.3483 -2.7169 -4.6981 13 8 3.8032 -2.0774 -5.6265 14 7 3.2888 -4.0615 -4.7710 15 6 3.7724 -4.7522 -5.9690 16 6 2.6652 -4.7551 -7.0188 17 6 3.2822 -5.0406 -8.4053 18 14 4.1800 -6.6554 -8.2764 19 6 3.0019 -8.1084 -8.4377 20 6 3.2294 -8.4399 -9.9492 21 6 4.7194 -8.2862 -10.2973 22 6 5.2936 -6.9440 -9.7562 23 6 5.1282 -6.7283 -6.6872 24 6 4.2082 -6.1628 -5.5843 25 6 2.3266 -2.7513 -2.4267 26 6 1.8679 -2.0937 -1.3028 27 9 1.3568 -2.7996 -0.2705 28 1 -0.3933 0.4417 0.7651 29 1 1.7924 -0.5138 0.8900 30 1 2.4991 1.0970 -2.2184 31 1 2.9258 -4.5718 -4.0302 32 1 4.6326 -4.2122 -6.3645 33 1 1.9359 -5.5281 -6.7767 34 1 2.1744 -3.7819 -7.0330 35 1 3.9803 -4.2475 -8.6735 36 1 2.4950 -5.1119 -9.1559 37 1 3.3012 -8.9383 -7.7974 38 1 1.9713 -7.8104 -8.2449 39 1 2.6417 -7.7569 -10.5624 40 1 2.9149 -9.4647 -10.1468 41 1 4.8372 -8.3137 -11.3806 42 1 5.2754 -9.1147 -9.8588 43 1 5.1861 -6.1459 -10.4907 44 1 6.3336 -7.0557 -9.4498 45 1 6.0310 -6.1224 -6.7648 46 1 5.3924 -7.7605 -6.4576 47 1 4.7497 -6.1315 -4.6389 48 1 3.3297 -6.7996 -5.4798 49 1 2.2765 -3.8288 -2.4815 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_15739290_12360598.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 13:25:31 Heat of formation + Delta-G solvation = -172.419492 kcal Electronic energy + Delta-G solvation = -31378.292583 eV Core-core repulsion = 26871.282668 eV Total energy + Delta-G solvation = -4507.009914 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 369.148 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -50.16254 -50.09390 -41.47660 -40.00529 -37.99597 -37.57689 -36.13779 -34.51959 -32.96916 -32.06711 -31.41822 -29.67395 -28.23383 -26.59496 -24.73789 -24.44301 -23.70850 -23.43921 -21.81425 -21.71515 -20.88902 -19.54226 -18.75946 -18.62086 -18.45293 -17.44586 -17.17146 -17.10642 -16.53674 -16.33848 -16.21820 -16.00637 -15.80317 -15.68170 -15.63175 -15.49463 -15.31083 -14.97504 -14.69607 -14.27651 -14.17957 -13.80044 -13.73598 -13.55203 -13.38296 -13.23673 -13.11205 -13.07199 -12.82656 -12.41224 -12.34718 -12.19573 -12.15614 -12.10975 -11.93117 -11.91427 -11.72724 -11.34895 -11.22765 -10.63596 -10.44387 -10.37498 -10.30081 -10.18292 -10.09644 -9.84157 -0.83292 -0.34379 1.02785 1.35413 1.41756 1.49010 1.76839 1.85636 1.88483 1.91657 1.98389 2.21783 2.68063 2.73571 2.82528 3.05669 3.29885 3.45431 3.70446 3.73426 3.75314 4.04014 4.11070 4.14282 4.16026 4.20258 4.30967 4.31809 4.32532 4.42018 4.49996 4.51868 4.62978 4.64904 4.66439 4.71323 4.72896 4.81758 4.84440 5.11445 5.13881 5.15819 5.21729 5.23833 5.26650 5.31354 5.35473 5.37774 5.45930 5.49509 5.54952 5.60417 6.33785 6.72125 7.01273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.557 6.557 2 C -0.088 4.088 3 Si 0.971 3.029 4 H -0.242 1.242 5 H -0.253 1.253 6 H -0.263 1.263 7 C -0.059 4.059 8 C -0.142 4.142 9 C 0.136 3.864 10 F -0.126 7.126 11 C -0.149 4.149 12 C 0.556 3.444 13 O -0.561 6.561 14 N -0.704 5.704 15 C 0.132 3.868 16 C -0.118 4.118 17 C -0.423 4.423 18 Si 1.052 2.948 19 C -0.407 4.407 20 C -0.128 4.128 21 C -0.123 4.123 22 C -0.428 4.428 23 C -0.410 4.410 24 C -0.114 4.114 25 C -0.075 4.075 26 C 0.108 3.892 27 F -0.122 7.122 28 H 0.405 0.595 29 H 0.106 0.894 30 H 0.160 0.840 31 H 0.416 0.584 32 H 0.071 0.929 33 H 0.090 0.910 34 H 0.041 0.959 35 H 0.065 0.935 36 H 0.079 0.921 37 H 0.087 0.913 38 H 0.083 0.917 39 H 0.061 0.939 40 H 0.063 0.937 41 H 0.054 0.946 42 H 0.065 0.935 43 H 0.069 0.931 44 H 0.080 0.920 45 H 0.077 0.923 46 H 0.098 0.902 47 H 0.082 0.918 48 H 0.096 0.904 49 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.150 -4.167 6.022 7.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.367 6.367 2 C -0.197 4.197 3 Si 0.793 3.207 4 H -0.165 1.165 5 H -0.177 1.177 6 H -0.188 1.188 7 C -0.061 4.061 8 C -0.160 4.160 9 C 0.115 3.885 10 F -0.104 7.104 11 C -0.153 4.153 12 C 0.343 3.657 13 O -0.440 6.440 14 N -0.356 5.356 15 C 0.028 3.972 16 C -0.156 4.156 17 C -0.508 4.508 18 Si 1.243 2.757 19 C -0.493 4.493 20 C -0.166 4.166 21 C -0.161 4.161 22 C -0.512 4.512 23 C -0.497 4.497 24 C -0.152 4.152 25 C -0.094 4.094 26 C 0.088 3.912 27 F -0.100 7.100 28 H 0.256 0.744 29 H 0.124 0.876 30 H 0.178 0.822 31 H 0.255 0.745 32 H 0.089 0.911 33 H 0.108 0.892 34 H 0.060 0.940 35 H 0.084 0.916 36 H 0.098 0.902 37 H 0.105 0.895 38 H 0.102 0.898 39 H 0.080 0.920 40 H 0.082 0.918 41 H 0.072 0.928 42 H 0.084 0.916 43 H 0.088 0.912 44 H 0.099 0.901 45 H 0.095 0.905 46 H 0.117 0.883 47 H 0.100 0.900 48 H 0.115 0.885 49 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -0.427 -3.162 4.829 5.788 hybrid contribution -0.365 0.079 0.188 0.418 sum -0.792 -3.083 5.017 5.941 Atomic orbital electron populations 1.86457 1.16353 1.82458 1.51424 1.24773 0.86617 1.11472 0.96878 0.85368 0.80199 0.74011 0.81095 1.16500 1.17671 1.18804 1.19593 0.97963 0.92412 0.96108 1.21059 1.01184 1.02075 0.91683 1.17788 0.96355 0.88722 0.85586 1.91592 1.83763 1.77719 1.57325 1.19864 1.06405 0.92138 0.96880 1.18058 0.78487 0.83281 0.85879 1.90863 1.46684 1.66860 1.39614 1.45938 1.63491 1.05146 1.21014 1.21252 0.97021 0.94302 0.84605 1.21714 0.97876 1.02003 0.94020 1.26430 1.08097 1.17868 0.98381 0.78846 0.66041 0.65069 0.65748 1.26725 1.10368 1.14485 0.97745 1.22078 0.95857 1.01996 0.96647 1.21884 0.95706 0.97547 1.00914 1.26722 1.08871 0.99978 1.15654 1.26169 1.05624 1.04906 1.12968 1.21615 1.01049 0.92623 0.99914 1.21391 0.95758 1.02553 0.89747 1.17261 0.98932 0.88759 0.86207 1.91569 1.84375 1.77977 1.56089 0.74393 0.87630 0.82240 0.74496 0.91082 0.89177 0.93985 0.91623 0.90180 0.89451 0.89841 0.92037 0.91821 0.92761 0.91613 0.91185 0.90115 0.90461 0.88290 0.89954 0.88543 0.79576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 1.32 12.86 -148.98 -1.92 -0.59 16 2 C -0.09 0.30 2.43 71.23 0.17 0.47 16 3 Si 0.97 -3.57 25.48 68.60 1.75 -1.82 16 4 H -0.24 1.09 7.11 99.48 0.71 1.80 16 5 H -0.25 0.52 7.11 99.48 0.71 1.23 16 6 H -0.26 0.10 6.72 99.48 0.67 0.77 16 7 C -0.06 -0.03 5.30 -19.78 -0.10 -0.14 16 8 C -0.14 -0.36 8.62 22.27 0.19 -0.17 16 9 C 0.14 0.89 7.28 22.67 0.17 1.06 16 10 F -0.13 -1.55 15.55 44.97 0.70 -0.86 16 11 C -0.15 -0.50 5.88 -20.06 -0.12 -0.62 16 12 C 0.56 3.53 7.54 86.74 0.65 4.19 16 13 O -0.56 -8.80 14.98 -3.92 -0.06 -8.86 16 14 N -0.70 1.01 4.97 -446.91 -2.22 -1.21 16 15 C 0.13 -0.12 1.98 44.71 0.09 -0.03 16 16 C -0.12 -0.01 5.24 30.94 0.16 0.15 16 17 C -0.42 0.11 4.96 72.47 0.36 0.47 16 18 Si 1.05 -5.22 10.56 68.60 0.72 -4.49 16 19 C -0.41 1.74 5.95 73.17 0.43 2.17 16 20 C -0.13 0.16 5.97 32.04 0.19 0.35 16 21 C -0.12 0.04 6.10 31.79 0.19 0.24 16 22 C -0.43 0.46 5.84 72.91 0.43 0.88 16 23 C -0.41 2.44 4.95 72.44 0.36 2.80 16 24 C -0.11 0.76 5.11 30.91 0.16 0.92 16 25 C -0.08 0.21 9.51 22.57 0.21 0.43 16 26 C 0.11 -0.04 7.23 22.33 0.16 0.12 16 27 F -0.12 -0.03 16.73 44.97 0.75 0.72 16 28 H 0.40 -4.67 8.74 -74.06 -0.65 -5.32 16 29 H 0.11 -0.78 7.89 -2.39 -0.02 -0.80 16 30 H 0.16 0.05 4.86 -2.91 -0.01 0.03 16 31 H 0.42 -3.71 6.62 -92.70 -0.61 -4.33 16 32 H 0.07 0.29 7.23 -2.39 -0.02 0.28 16 33 H 0.09 -0.41 7.75 -2.39 -0.02 -0.43 16 34 H 0.04 0.25 7.94 -2.38 -0.02 0.23 16 35 H 0.06 0.19 7.97 -2.39 -0.02 0.17 16 36 H 0.08 -0.03 7.97 -2.39 -0.02 -0.05 16 37 H 0.09 -0.48 8.04 -2.38 -0.02 -0.50 16 38 H 0.08 -0.41 8.04 -2.38 -0.02 -0.43 16 39 H 0.06 -0.07 8.14 -2.39 -0.02 -0.09 16 40 H 0.06 -0.07 8.14 -2.39 -0.02 -0.08 16 41 H 0.05 0.05 8.14 -2.39 -0.02 0.03 16 42 H 0.07 -0.09 8.14 -2.39 -0.02 -0.11 16 43 H 0.07 0.02 8.03 -2.39 -0.02 0.00 16 44 H 0.08 -0.13 8.03 -2.39 -0.02 -0.15 16 45 H 0.08 -0.35 7.97 -2.39 -0.02 -0.37 16 46 H 0.10 -0.78 7.97 -2.39 -0.02 -0.80 16 47 H 0.08 -0.63 8.13 -2.39 -0.02 -0.65 16 48 H 0.10 -1.02 7.76 -2.38 -0.02 -1.04 16 49 H 0.19 -1.99 6.41 -2.91 -0.02 -2.01 16 Total: 0.00 -20.32 391.91 3.89 -16.43 By element: Atomic # 1 Polarization: -13.06 SS G_CDS: 0.45 Total: -12.61 kcal Atomic # 6 Polarization: 9.58 SS G_CDS: 3.71 Total: 13.29 kcal Atomic # 7 Polarization: 1.01 SS G_CDS: -2.22 Total: -1.21 kcal Atomic # 8 Polarization: -7.48 SS G_CDS: -1.97 Total: -9.45 kcal Atomic # 9 Polarization: -1.59 SS G_CDS: 1.45 Total: -0.13 kcal Atomic # 14 Polarization: -8.79 SS G_CDS: 2.47 Total: -6.32 kcal Total: -20.32 3.89 -16.43 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_15739290_12360598.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -155.989 kcal (2) G-P(sol) polarization free energy of solvation -20.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds