Wall clock time and date at job start Thu Mar 4 2021 13:40:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86296 * 109.46936 * 2 1 4 4 H 1.48495 * 109.47317 * 300.00286 * 3 2 1 5 5 H 1.48504 * 109.47264 * 60.00305 * 3 2 1 6 6 H 1.48501 * 109.47183 * 180.02562 * 3 2 1 7 7 C 1.50702 * 109.46728 * 240.00527 * 2 1 3 8 8 C 1.38058 * 119.80085 * 299.99437 * 7 2 1 9 9 C 1.38712 * 120.08395 * 179.97438 * 8 7 2 10 10 O 1.35644 * 120.15306 * 180.02562 * 9 8 7 11 11 C 1.40140 * 119.69772 * 0.02562 * 9 8 7 12 12 C 1.47531 * 120.19204 * 179.97438 * 11 9 8 13 13 O 1.21583 * 120.00091 * 0.02562 * 12 11 9 14 14 N 1.34782 * 119.99780 * 179.97438 * 12 11 9 15 15 C 1.46506 * 119.99569 * 179.97438 * 14 12 11 16 16 C 1.52588 * 108.90847 * 204.99993 * 15 14 12 17 17 C 1.54362 * 109.20169 * 161.59307 * 16 15 14 18 18 Si 1.85204 * 107.14387 * 56.67478 * 17 16 15 19 19 C 1.87761 * 111.39232 * 193.23530 * 18 17 16 20 20 C 1.56407 * 98.97303 * 221.43794 * 19 18 17 21 21 C 1.53779 * 109.77706 * 39.35984 * 20 19 18 22 22 C 1.55690 * 111.40408 * 312.19566 * 21 20 19 23 23 C 1.85277 * 109.97989 * 317.33870 * 18 17 16 24 24 C 1.52591 * 108.83320 * 82.24148 * 15 14 12 25 25 C 1.39714 * 119.61701 * 0.25842 * 11 9 8 26 26 C 1.37794 * 119.90774 * 359.48331 * 25 11 9 27 27 H 0.96700 * 114.00386 * 59.99767 * 1 2 3 28 28 H 1.08999 * 109.47169 * 120.00073 * 2 1 3 29 29 H 1.08003 * 119.96054 * 0.02562 * 8 7 2 30 30 H 0.96700 * 114.00332 * 269.97763 * 10 9 8 31 31 H 0.96998 * 120.00003 * 0.02562 * 14 12 11 32 32 H 1.08998 * 108.89064 * 323.64291 * 15 14 12 33 33 H 1.09003 * 109.51691 * 41.68235 * 16 15 14 34 34 H 1.08998 * 109.56693 * 281.54017 * 16 15 14 35 35 H 1.09002 * 109.93522 * 176.10916 * 17 16 15 36 36 H 1.09000 * 109.93236 * 297.24332 * 17 16 15 37 37 H 1.09004 * 111.48939 * 338.87885 * 19 18 17 38 38 H 1.08995 * 111.49490 * 103.99331 * 19 18 17 39 39 H 1.08995 * 109.41788 * 279.26608 * 20 19 18 40 40 H 1.08998 * 109.42029 * 159.45540 * 20 19 18 41 41 H 1.08998 * 109.10136 * 191.67900 * 21 20 19 42 42 H 1.09007 * 109.09995 * 72.71222 * 21 20 19 43 43 H 1.08997 * 111.14134 * 270.09921 * 22 21 20 44 44 H 1.08999 * 111.17949 * 145.89816 * 22 21 20 45 45 H 1.08996 * 109.86118 * 283.27731 * 23 18 17 46 46 H 1.09008 * 110.01933 * 162.13210 * 23 18 17 47 47 H 1.08997 * 109.51931 * 318.37097 * 24 15 14 48 48 H 1.09005 * 109.51419 * 78.53757 * 24 15 14 49 49 H 1.07997 * 120.04727 * 179.72701 * 25 11 9 50 50 H 1.07995 * 119.84752 * 180.23351 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 1 1.5549 2.4565 -1.2124 5 1 1.5550 2.4565 1.2126 6 1 3.5350 1.7565 -0.0006 7 6 1.9313 -0.7103 -1.2306 8 6 1.5953 -2.0321 -1.4450 9 6 2.0539 -2.6915 -2.5759 10 8 1.7242 -3.9900 -2.7883 11 6 2.8594 -2.0099 -3.4982 12 6 3.3537 -2.7008 -4.7044 13 8 3.0619 -3.8646 -4.9009 14 7 4.1277 -2.0414 -5.5891 15 6 4.6190 -2.7276 -6.7867 16 6 5.8974 -2.0421 -7.2600 17 6 6.6654 -2.9943 -8.2014 18 14 5.5142 -3.4441 -9.5807 19 6 6.1705 -4.8956 -10.5747 20 6 5.8151 -4.3883 -12.0109 21 6 6.0798 -2.8767 -12.1092 22 6 5.4665 -2.1126 -10.8992 23 6 3.8241 -3.7929 -8.9065 24 6 3.5238 -2.7092 -7.8491 25 6 3.1967 -0.6742 -3.2657 26 6 2.7279 -0.0332 -2.1396 27 1 -0.3934 0.4417 -0.7650 28 1 1.7924 -0.5138 0.8900 29 1 0.9739 -2.5532 -0.7317 30 1 2.3501 -4.6219 -2.4088 31 1 4.3601 -1.1128 -5.4325 32 1 4.8466 -3.7627 -6.5319 33 1 6.5209 -1.8000 -6.3993 34 1 5.6442 -1.1269 -7.7952 35 1 7.5459 -2.4913 -8.6012 36 1 6.9643 -3.8915 -7.6593 37 1 7.2468 -5.0126 -10.4474 38 1 5.6403 -5.8169 -10.3339 39 1 4.7628 -4.5860 -12.2149 40 1 6.4299 -4.9123 -12.7428 41 1 5.6397 -2.4967 -13.0312 42 1 7.1558 -2.7037 -12.1321 43 1 4.4426 -1.8027 -11.1080 44 1 6.0837 -1.2592 -10.6186 45 1 3.8066 -4.7792 -8.4430 46 1 3.0858 -3.7455 -9.7072 47 1 2.5601 -2.9129 -7.3823 48 1 3.4976 -1.7304 -8.3281 49 1 3.8207 -0.1436 -3.9696 50 1 2.9861 1.0004 -1.9628 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_15739290_13422076.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 13:40:24 Heat of formation + Delta-G solvation = -131.793661 kcal Electronic energy + Delta-G solvation = -28660.933946 eV Core-core repulsion = 24775.911459 eV Total energy + Delta-G solvation = -3885.022487 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 349.167 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.70633 -40.21293 -38.55943 -37.67173 -37.13882 -36.14172 -34.23320 -32.40857 -32.07308 -31.13145 -29.68240 -27.92459 -26.44683 -24.72191 -23.92217 -23.63373 -23.32301 -21.71959 -21.45815 -20.92653 -19.43127 -18.68372 -18.31356 -17.50591 -16.73745 -16.41442 -16.25183 -16.16818 -16.02376 -15.95415 -15.76554 -15.50300 -15.35808 -15.11471 -14.89977 -14.54926 -14.18466 -13.89746 -13.66885 -13.38842 -13.31298 -13.20435 -13.12511 -12.87783 -12.81684 -12.36253 -12.35501 -12.18016 -12.13909 -12.11868 -12.03710 -11.95567 -11.73587 -11.54023 -11.34538 -10.93592 -10.50696 -10.37601 -10.30676 -10.17991 -10.12845 -9.98261 -9.76992 -0.41685 0.13275 1.16827 1.50968 1.54542 1.72534 1.78660 1.90452 1.95744 1.96811 2.09252 2.57025 2.67404 3.12819 3.44637 3.55328 3.66680 3.73391 3.82020 4.02647 4.08297 4.12824 4.15776 4.19574 4.27226 4.32333 4.41654 4.46258 4.49798 4.63460 4.65445 4.68126 4.68895 4.76059 4.81500 4.84497 5.00459 5.09775 5.12231 5.13548 5.15210 5.22322 5.22499 5.24549 5.27142 5.36073 5.38719 5.46011 5.51089 5.54448 5.58689 5.60711 6.50201 6.66964 6.70979 7.19351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.553 6.553 2 C -0.091 4.091 3 Si 0.988 3.012 4 H -0.245 1.245 5 H -0.280 1.280 6 H -0.246 1.246 7 C -0.073 4.073 8 C -0.135 4.135 9 C 0.152 3.848 10 O -0.498 6.498 11 C -0.181 4.181 12 C 0.553 3.447 13 O -0.563 6.563 14 N -0.712 5.712 15 C 0.135 3.865 16 C -0.114 4.114 17 C -0.409 4.409 18 Si 1.053 2.947 19 C -0.425 4.425 20 C -0.128 4.128 21 C -0.123 4.123 22 C -0.410 4.410 23 C -0.423 4.423 24 C -0.116 4.116 25 C -0.054 4.054 26 C -0.145 4.145 27 H 0.390 0.610 28 H 0.128 0.872 29 H 0.140 0.860 30 H 0.407 0.593 31 H 0.413 0.587 32 H 0.068 0.932 33 H 0.081 0.919 34 H 0.094 0.906 35 H 0.098 0.902 36 H 0.078 0.922 37 H 0.081 0.919 38 H 0.072 0.928 39 H 0.061 0.939 40 H 0.059 0.941 41 H 0.058 0.942 42 H 0.065 0.935 43 H 0.076 0.924 44 H 0.090 0.910 45 H 0.064 0.936 46 H 0.077 0.923 47 H 0.037 0.963 48 H 0.086 0.914 49 H 0.167 0.833 50 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.882 6.581 0.090 8.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.360 6.360 2 C -0.200 4.200 3 Si 0.811 3.189 4 H -0.168 1.168 5 H -0.205 1.205 6 H -0.170 1.170 7 C -0.074 4.074 8 C -0.154 4.154 9 C 0.106 3.894 10 O -0.311 6.311 11 C -0.185 4.185 12 C 0.341 3.659 13 O -0.442 6.442 14 N -0.365 5.365 15 C 0.031 3.969 16 C -0.151 4.151 17 C -0.496 4.496 18 Si 1.243 2.757 19 C -0.509 4.509 20 C -0.166 4.166 21 C -0.160 4.160 22 C -0.496 4.496 23 C -0.508 4.508 24 C -0.154 4.154 25 C -0.073 4.073 26 C -0.162 4.162 27 H 0.239 0.761 28 H 0.146 0.854 29 H 0.157 0.843 30 H 0.267 0.733 31 H 0.252 0.748 32 H 0.086 0.914 33 H 0.100 0.900 34 H 0.112 0.888 35 H 0.117 0.883 36 H 0.096 0.904 37 H 0.100 0.900 38 H 0.091 0.909 39 H 0.080 0.920 40 H 0.078 0.922 41 H 0.077 0.923 42 H 0.084 0.916 43 H 0.095 0.905 44 H 0.109 0.891 45 H 0.083 0.917 46 H 0.096 0.904 47 H 0.056 0.944 48 H 0.105 0.895 49 H 0.184 0.816 50 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 4.577 6.490 0.225 7.945 hybrid contribution -0.226 -0.748 -0.311 0.841 sum 4.351 5.742 -0.086 7.205 Atomic orbital electron populations 1.86513 1.17378 1.82010 1.50130 1.25284 0.85065 1.11700 0.97957 0.85130 0.80123 0.73339 0.80293 1.16835 1.20519 1.16957 1.20598 0.96185 0.93754 0.96820 1.21346 1.01714 0.95408 0.96924 1.18790 0.92810 0.85698 0.92129 1.84715 1.52502 1.13398 1.80477 1.20483 1.03765 0.96797 0.97461 1.18344 0.78333 0.86047 0.83185 1.90805 1.58137 1.18074 1.77209 1.45987 1.51530 1.16318 1.22631 1.21159 0.94060 0.97594 0.84097 1.21608 0.93579 0.99278 1.00674 1.26157 1.08963 1.03498 1.10982 0.78850 0.64814 0.66405 0.65622 1.26854 1.05903 1.12588 1.05602 1.22086 1.01422 0.95719 0.97354 1.21877 1.01296 0.93929 0.98932 1.26579 1.03571 1.09613 1.09821 1.26455 1.19874 1.00994 1.03447 1.21677 0.97700 1.00120 0.95950 1.21465 0.96937 0.91605 0.97260 1.21250 0.99285 1.01104 0.94575 0.76053 0.85387 0.84260 0.73327 0.74839 0.91420 0.90006 0.88782 0.88296 0.90365 0.90022 0.90916 0.92041 0.92188 0.92315 0.91597 0.90498 0.89111 0.91743 0.90388 0.94380 0.89532 0.81613 0.83130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 0.61 12.76 -148.98 -1.90 -1.30 16 2 C -0.09 0.34 2.81 71.24 0.20 0.54 16 3 Si 0.99 -5.18 25.05 68.60 1.72 -3.47 16 4 H -0.24 1.45 7.11 99.48 0.71 2.16 16 5 H -0.28 0.14 7.11 99.48 0.71 0.85 16 6 H -0.25 1.38 7.11 99.48 0.71 2.09 16 7 C -0.07 0.13 5.39 -19.83 -0.11 0.02 16 8 C -0.14 -0.28 9.53 22.34 0.21 -0.07 16 9 C 0.15 0.84 6.72 22.85 0.15 1.00 16 10 O -0.50 -4.27 11.58 -68.66 -0.79 -5.06 16 11 C -0.18 -0.59 5.89 -20.01 -0.12 -0.70 16 12 C 0.55 3.63 7.48 86.69 0.65 4.28 16 13 O -0.56 -8.56 14.77 16.94 0.25 -8.31 16 14 N -0.71 0.56 4.99 -447.00 -2.23 -1.67 16 15 C 0.14 -0.04 1.96 44.72 0.09 0.05 16 16 C -0.11 0.71 5.11 30.92 0.16 0.87 16 17 C -0.41 2.38 4.95 72.44 0.36 2.73 16 18 Si 1.05 -4.91 10.58 68.60 0.73 -4.18 16 19 C -0.42 0.46 5.95 73.17 0.43 0.90 16 20 C -0.13 0.01 5.97 32.04 0.19 0.20 16 21 C -0.12 0.17 6.09 31.79 0.19 0.37 16 22 C -0.41 1.61 5.84 72.91 0.43 2.04 16 23 C -0.42 -0.21 4.96 72.44 0.36 0.15 16 24 C -0.12 -0.14 5.24 30.92 0.16 0.02 16 25 C -0.05 0.21 9.54 22.52 0.21 0.42 16 26 C -0.14 0.63 8.64 22.24 0.19 0.82 16 27 H 0.39 -2.89 8.70 -74.06 -0.64 -3.53 16 28 H 0.13 -0.67 7.96 -2.39 -0.02 -0.69 16 29 H 0.14 0.26 8.06 -2.91 -0.02 0.24 16 30 H 0.41 0.62 9.06 -74.06 -0.67 -0.06 16 31 H 0.41 -3.31 6.61 -92.71 -0.61 -3.92 16 32 H 0.07 0.32 7.29 -2.39 -0.02 0.30 16 33 H 0.08 -0.60 8.13 -2.39 -0.02 -0.62 16 34 H 0.09 -0.95 7.77 -2.39 -0.02 -0.97 16 35 H 0.10 -0.78 7.97 -2.39 -0.02 -0.80 16 36 H 0.08 -0.35 7.97 -2.39 -0.02 -0.37 16 37 H 0.08 -0.14 8.04 -2.38 -0.02 -0.16 16 38 H 0.07 0.00 8.04 -2.39 -0.02 -0.02 16 39 H 0.06 0.00 8.14 -2.39 -0.02 -0.02 16 40 H 0.06 0.03 8.14 -2.39 -0.02 0.01 16 41 H 0.06 -0.04 8.14 -2.39 -0.02 -0.06 16 42 H 0.07 -0.15 8.14 -2.38 -0.02 -0.17 16 43 H 0.08 -0.27 8.03 -2.39 -0.02 -0.29 16 44 H 0.09 -0.55 8.03 -2.39 -0.02 -0.57 16 45 H 0.06 0.23 7.97 -2.39 -0.02 0.21 16 46 H 0.08 0.04 7.98 -2.38 -0.02 0.02 16 47 H 0.04 0.30 7.82 -2.39 -0.02 0.28 16 48 H 0.09 -0.28 7.76 -2.38 -0.02 -0.30 16 49 H 0.17 -1.89 6.40 -2.91 -0.02 -1.90 16 50 H 0.15 -1.32 4.85 -2.91 -0.01 -1.34 16 Total: 0.00 -21.29 390.11 1.33 -19.96 By element: Atomic # 1 Polarization: -9.41 SS G_CDS: -0.21 Total: -9.62 kcal Atomic # 6 Polarization: 9.88 SS G_CDS: 3.77 Total: 13.65 kcal Atomic # 7 Polarization: 0.56 SS G_CDS: -2.23 Total: -1.67 kcal Atomic # 8 Polarization: -12.22 SS G_CDS: -2.45 Total: -14.67 kcal Atomic # 14 Polarization: -10.09 SS G_CDS: 2.44 Total: -7.65 kcal Total: -21.29 1.33 -19.96 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_15739290_13422076.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.834 kcal (2) G-P(sol) polarization free energy of solvation -21.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds