Wall clock time and date at job start Thu Mar 4 2021 13:51:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86305 * 109.47234 * 2 1 4 4 H 1.48504 * 109.46963 * 60.00189 * 3 2 1 5 5 H 1.48499 * 109.47107 * 180.02562 * 3 2 1 6 6 H 1.48500 * 109.47138 * 300.00155 * 3 2 1 7 7 C 1.50703 * 109.47315 * 120.00242 * 2 1 3 8 8 C 1.34174 * 125.43721 * 64.99660 * 7 2 1 9 9 C 1.47019 * 105.95603 * 180.02562 * 8 7 2 10 10 C 1.47372 * 127.19448 * 179.97438 * 9 8 7 11 11 O 1.21619 * 119.99900 * 359.97438 * 10 9 8 12 12 N 1.34775 * 120.00456 * 179.97438 * 10 9 8 13 13 C 1.46493 * 120.00608 * 179.97438 * 12 10 9 14 14 C 1.52586 * 108.91059 * 154.99735 * 13 12 10 15 15 C 1.54362 * 109.20981 * 198.48435 * 14 13 12 16 16 Si 1.85199 * 107.06814 * 303.27337 * 15 14 13 17 17 C 1.87430 * 111.55701 * 167.17538 * 16 15 14 18 18 C 1.55697 * 100.87968 * 121.64056 * 17 16 15 19 19 C 1.53840 * 111.36481 * 332.07181 * 18 17 16 20 20 C 1.56398 * 109.81410 * 47.74979 * 19 18 17 21 21 C 1.85203 * 110.00805 * 42.82291 * 16 15 14 22 22 C 1.52586 * 108.91341 * 277.81852 * 13 12 10 23 23 C 1.36415 * 105.61344 * 0.22275 * 9 8 7 24 24 O 1.33656 * 108.39750 * 359.63702 * 23 9 8 25 25 H 0.96697 * 114.00001 * 59.99488 * 1 2 3 26 26 H 1.09000 * 109.46564 * 240.00491 * 2 1 3 27 27 H 1.08007 * 127.01975 * 0.02562 * 8 7 2 28 28 H 0.97009 * 119.99837 * 359.97438 * 12 10 9 29 29 H 1.09001 * 108.88843 * 36.36395 * 13 12 10 30 30 H 1.09006 * 109.51499 * 78.57205 * 14 13 12 31 31 H 1.08994 * 109.52036 * 318.40710 * 14 13 12 32 32 H 1.09002 * 109.93494 * 183.87952 * 15 14 13 33 33 H 1.08998 * 110.00192 * 62.70311 * 15 14 13 34 34 H 1.09002 * 111.14489 * 239.55751 * 17 16 15 35 35 H 1.08997 * 111.14261 * 3.72473 * 17 16 15 36 36 H 1.08995 * 109.10511 * 92.54664 * 18 17 16 37 37 H 1.09006 * 109.09924 * 211.52315 * 18 17 16 38 38 H 1.09007 * 109.38945 * 287.65199 * 19 18 17 39 39 H 1.08999 * 109.42161 * 167.86890 * 19 18 17 40 40 H 1.08998 * 111.49915 * 203.21349 * 20 19 18 41 41 H 1.09000 * 111.54323 * 78.10804 * 20 19 18 42 42 H 1.09001 * 109.93748 * 76.56224 * 21 16 15 43 43 H 1.08996 * 109.93797 * 197.79007 * 21 16 15 44 44 H 1.09001 * 109.51575 * 281.43938 * 22 13 12 45 45 H 1.09004 * 109.51034 * 41.54173 * 22 13 12 46 46 H 1.08000 * 125.80262 * 179.75161 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 1 1.5551 2.4565 1.2126 5 1 3.5350 1.7565 -0.0006 6 1 1.5550 2.4565 -1.2125 7 6 1.9314 -0.7105 1.2304 8 6 1.7551 -2.0122 1.5036 9 6 2.4120 -2.2461 2.7979 10 6 2.4992 -3.5190 3.5356 11 8 1.9913 -4.5240 3.0762 12 7 3.1418 -3.5693 4.7192 13 6 3.2280 -4.8344 5.4527 14 6 4.4541 -4.7973 6.3603 15 6 4.8245 -6.2379 6.7727 16 14 3.3294 -6.9733 7.5813 17 6 3.4995 -8.8287 7.7856 18 6 3.3454 -8.9697 9.3285 19 6 3.8125 -7.6977 10.0570 20 6 3.1876 -6.4366 9.3750 21 6 1.8082 -6.5310 6.6220 22 6 1.9341 -5.0421 6.2343 23 6 2.9190 -1.0375 3.1761 24 8 2.6261 -0.1419 2.2282 25 1 -0.3933 0.4418 -0.7650 26 1 1.7922 -0.5138 -0.8901 27 1 1.2365 -2.7396 0.8966 28 1 3.5472 -2.7677 5.0855 29 1 3.3421 -5.6496 4.7382 30 1 4.2303 -4.2098 7.2508 31 1 5.2895 -4.3454 5.8255 32 1 5.6569 -6.2206 7.4763 33 1 5.0949 -6.8201 5.8918 34 1 2.7032 -9.3567 7.2610 35 1 4.4797 -9.1723 7.4553 36 1 2.2978 -9.1529 9.5672 37 1 3.9405 -9.8166 9.6705 38 1 4.8997 -7.6332 10.0115 39 1 3.4963 -7.7402 11.0993 40 1 3.7784 -5.5420 9.5721 41 1 2.1474 -6.2966 9.6690 42 1 1.7438 -7.1447 5.7235 43 1 0.9227 -6.6806 7.2397 44 1 1.9518 -4.4311 7.1368 45 1 1.0846 -4.7531 5.6155 46 1 3.4660 -0.8385 4.0858 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_15739290_13456056.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 13:51:22 Heat of formation + Delta-G solvation = -101.327177 kcal Electronic energy + Delta-G solvation = -25033.460222 eV Core-core repulsion = 21433.522621 eV Total energy + Delta-G solvation = -3599.937602 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.151 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.74095 -40.83153 -37.91535 -37.85810 -36.12932 -34.48129 -33.55699 -32.06953 -31.80679 -29.67663 -27.42345 -26.42298 -24.93445 -24.24092 -23.58719 -22.23466 -21.68570 -20.97727 -20.65040 -18.98091 -18.68237 -17.39706 -17.30668 -17.13461 -16.25942 -16.17100 -15.94088 -15.88751 -15.71480 -15.49704 -14.94518 -14.89723 -14.64428 -14.19732 -14.18891 -13.77981 -13.58248 -13.37713 -13.21913 -13.09069 -12.92235 -12.70489 -12.33088 -12.17873 -12.15647 -12.12137 -12.04203 -11.94207 -11.73218 -11.34598 -11.21429 -10.96726 -10.48556 -10.36372 -10.30104 -10.17844 -10.08107 -9.77282 0.24053 0.79950 1.06104 1.37184 1.54772 1.74139 1.79296 1.90324 1.94773 1.97321 2.07962 2.25635 2.68119 3.37328 3.51105 3.68811 3.75267 3.93682 4.05907 4.13446 4.16196 4.20015 4.30032 4.32784 4.41929 4.42748 4.50744 4.51801 4.64722 4.67403 4.71831 4.82496 4.83835 4.89130 5.11712 5.12977 5.14446 5.15752 5.21573 5.24232 5.27581 5.35642 5.38925 5.46035 5.50827 5.55044 5.61059 5.83226 6.49900 6.73831 7.16995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.563 6.563 2 C -0.049 4.049 3 Si 0.997 3.003 4 H -0.276 1.276 5 H -0.259 1.259 6 H -0.236 1.236 7 C -0.022 4.022 8 C -0.148 4.148 9 C -0.268 4.268 10 C 0.585 3.415 11 O -0.584 6.584 12 N -0.708 5.708 13 C 0.134 3.866 14 C -0.113 4.113 15 C -0.409 4.409 16 Si 1.052 2.948 17 C -0.427 4.427 18 C -0.124 4.124 19 C -0.126 4.126 20 C -0.408 4.408 21 C -0.425 4.425 22 C -0.117 4.117 23 C 0.061 3.939 24 O -0.176 6.176 25 H 0.408 0.592 26 H 0.120 0.880 27 H 0.149 0.851 28 H 0.416 0.584 29 H 0.066 0.934 30 H 0.096 0.904 31 H 0.082 0.918 32 H 0.099 0.901 33 H 0.077 0.923 34 H 0.071 0.929 35 H 0.079 0.921 36 H 0.057 0.943 37 H 0.057 0.943 38 H 0.071 0.929 39 H 0.061 0.939 40 H 0.091 0.909 41 H 0.076 0.924 42 H 0.062 0.938 43 H 0.079 0.921 44 H 0.089 0.911 45 H 0.038 0.962 46 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.278 4.939 1.694 6.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.374 6.374 2 C -0.158 4.158 3 Si 0.818 3.182 4 H -0.201 1.201 5 H -0.183 1.183 6 H -0.159 1.159 7 C -0.069 4.069 8 C -0.168 4.168 9 C -0.272 4.272 10 C 0.374 3.626 11 O -0.465 6.465 12 N -0.360 5.360 13 C 0.030 3.970 14 C -0.150 4.150 15 C -0.496 4.496 16 Si 1.243 2.757 17 C -0.512 4.512 18 C -0.162 4.162 19 C -0.163 4.163 20 C -0.494 4.494 21 C -0.509 4.509 22 C -0.155 4.155 23 C -0.009 4.009 24 O -0.072 6.072 25 H 0.261 0.739 26 H 0.137 0.863 27 H 0.167 0.833 28 H 0.254 0.746 29 H 0.084 0.916 30 H 0.115 0.885 31 H 0.101 0.899 32 H 0.117 0.883 33 H 0.095 0.905 34 H 0.090 0.910 35 H 0.097 0.903 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.090 0.910 39 H 0.080 0.920 40 H 0.110 0.890 41 H 0.094 0.906 42 H 0.081 0.919 43 H 0.098 0.902 44 H 0.107 0.893 45 H 0.056 0.944 46 H 0.280 0.720 Dipole moment (debyes) X Y Z Total from point charges 4.364 5.069 1.847 6.939 hybrid contribution -0.638 -0.679 -0.412 1.019 sum 3.726 4.390 1.435 5.934 Atomic orbital electron populations 1.86435 1.16713 1.82533 1.51723 1.24060 0.86045 1.12441 0.93257 0.84975 0.79580 0.72821 0.80784 1.20067 1.18333 1.15877 1.21555 1.00912 0.92067 0.92407 1.22562 1.01858 0.95995 0.96370 1.21532 1.11145 0.95056 0.99496 1.17497 0.77485 0.86772 0.80849 1.90783 1.48751 1.37416 1.69565 1.45850 1.56412 1.13658 1.20043 1.21185 0.95987 0.85829 0.94022 1.21605 0.95522 0.98176 0.99729 1.26148 1.14712 1.00888 1.07872 0.78858 0.65313 0.65469 0.66068 1.26716 1.04377 1.22123 0.97962 1.21913 1.01344 0.98287 0.94655 1.22071 1.01024 0.93395 0.99826 1.26717 1.03467 1.00036 1.19163 1.26464 1.17109 0.98705 1.08655 1.21688 0.96452 0.97109 1.00284 1.25316 0.97456 0.85092 0.93008 1.83689 1.57495 1.39505 1.26535 0.73938 0.86286 0.83333 0.74640 0.91603 0.88532 0.89895 0.88255 0.90457 0.90995 0.90258 0.92455 0.92375 0.91017 0.92013 0.89004 0.90551 0.91864 0.90238 0.89258 0.94356 0.71976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 0.05 12.86 -148.98 -1.92 -1.87 16 2 C -0.05 0.06 2.96 71.24 0.21 0.27 16 3 Si 1.00 -2.40 27.38 68.60 1.88 -0.52 16 4 H -0.28 -0.70 7.11 99.48 0.71 0.01 16 5 H -0.26 0.13 7.11 99.48 0.71 0.84 16 6 H -0.24 1.05 7.11 99.48 0.71 1.76 16 7 C -0.02 -0.09 6.22 24.76 0.15 0.06 16 8 C -0.15 -1.17 10.90 23.65 0.26 -0.91 16 9 C -0.27 -1.39 6.31 -19.00 -0.12 -1.51 16 10 C 0.59 4.75 7.53 86.65 0.65 5.41 16 11 O -0.58 -10.56 16.59 -4.09 -0.07 -10.63 16 12 N -0.71 0.40 5.03 -447.17 -2.25 -1.84 16 13 C 0.13 0.01 1.96 44.72 0.09 0.10 16 14 C -0.11 0.71 5.11 30.92 0.16 0.87 16 15 C -0.41 2.27 4.96 72.44 0.36 2.63 16 16 Si 1.05 -4.68 10.56 68.60 0.72 -3.96 16 17 C -0.43 0.30 5.84 72.91 0.43 0.73 16 18 C -0.12 0.00 6.10 31.81 0.19 0.19 16 19 C -0.13 0.23 5.97 32.06 0.19 0.42 16 20 C -0.41 1.62 5.95 73.17 0.44 2.05 16 21 C -0.43 -0.31 4.96 72.45 0.36 0.05 16 22 C -0.12 -0.16 5.24 30.92 0.16 0.00 16 23 C 0.06 -0.15 11.61 67.39 0.78 0.63 16 24 O -0.18 -0.36 8.90 4.47 0.04 -0.32 16 25 H 0.41 -4.25 8.74 -74.06 -0.65 -4.90 16 26 H 0.12 -0.75 7.96 -2.39 -0.02 -0.77 16 27 H 0.15 1.41 8.06 -2.91 -0.02 1.39 16 28 H 0.42 -3.77 7.55 -92.70 -0.70 -4.47 16 29 H 0.07 0.37 7.28 -2.39 -0.02 0.35 16 30 H 0.10 -1.01 7.76 -2.38 -0.02 -1.03 16 31 H 0.08 -0.62 8.13 -2.39 -0.02 -0.64 16 32 H 0.10 -0.77 7.97 -2.39 -0.02 -0.79 16 33 H 0.08 -0.31 7.97 -2.39 -0.02 -0.33 16 34 H 0.07 0.04 8.03 -2.39 -0.02 0.02 16 35 H 0.08 -0.10 8.03 -2.39 -0.02 -0.12 16 36 H 0.06 0.03 8.14 -2.39 -0.02 0.01 16 37 H 0.06 0.03 8.14 -2.38 -0.02 0.01 16 38 H 0.07 -0.25 8.14 -2.38 -0.02 -0.27 16 39 H 0.06 -0.07 8.14 -2.39 -0.02 -0.09 16 40 H 0.09 -0.58 8.04 -2.39 -0.02 -0.60 16 41 H 0.08 -0.24 8.04 -2.39 -0.02 -0.25 16 42 H 0.06 0.25 7.97 -2.39 -0.02 0.23 16 43 H 0.08 0.04 7.97 -2.39 -0.02 0.03 16 44 H 0.09 -0.31 7.76 -2.39 -0.02 -0.33 16 45 H 0.04 0.30 7.83 -2.39 -0.02 0.28 16 46 H 0.26 -3.80 7.47 -2.91 -0.02 -3.83 16 Total: 0.00 -24.73 369.39 3.11 -21.63 By element: Atomic # 1 Polarization: -13.86 SS G_CDS: 0.39 Total: -13.48 kcal Atomic # 6 Polarization: 6.69 SS G_CDS: 4.31 Total: 11.00 kcal Atomic # 7 Polarization: 0.40 SS G_CDS: -2.25 Total: -1.84 kcal Atomic # 8 Polarization: -10.87 SS G_CDS: -1.94 Total: -12.82 kcal Atomic # 14 Polarization: -7.08 SS G_CDS: 2.60 Total: -4.48 kcal Total: -24.73 3.11 -21.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_15739290_13456056.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.702 kcal (2) G-P(sol) polarization free energy of solvation -24.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds