Wall clock time and date at job start Thu Mar 4 2021 14:02:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42899 * 1 3 3 Si 1.86297 * 109.47517 * 2 1 4 4 H 1.48496 * 109.47305 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46955 * 300.00605 * 3 2 1 6 6 H 1.48503 * 109.46719 * 59.99711 * 3 2 1 7 7 C 1.50698 * 109.47089 * 120.00428 * 2 1 3 8 8 C 1.38128 * 119.97190 * 64.99403 * 7 2 1 9 9 C 1.38748 * 119.94341 * 179.97438 * 8 7 2 10 10 O 1.35899 * 120.05608 * 180.02562 * 9 8 7 11 11 C 1.42912 * 116.99999 * 180.02562 * 10 9 8 12 12 C 1.50696 * 109.46613 * 180.02562 * 11 10 9 13 13 O 1.21272 * 120.00581 * 0.02562 * 12 11 10 14 14 N 1.34783 * 119.99588 * 180.02562 * 12 11 10 15 15 C 1.46498 * 120.00049 * 179.97438 * 14 12 11 16 16 C 1.52594 * 108.90412 * 83.63262 * 15 14 12 17 17 C 1.54216 * 109.29119 * 198.48134 * 16 15 14 18 18 Si 1.85207 * 106.98593 * 303.15294 * 17 16 15 19 19 C 1.87749 * 111.40638 * 166.95733 * 18 17 16 20 20 C 1.56403 * 98.96948 * 98.21073 * 19 18 17 21 21 C 1.53785 * 109.78066 * 39.35379 * 20 19 18 22 22 C 1.55681 * 111.40081 * 312.19485 * 21 20 19 23 23 C 1.85214 * 109.99414 * 42.91896 * 18 17 16 24 24 C 1.52589 * 108.90667 * 206.36973 * 15 14 12 25 25 C 1.38712 * 119.88686 * 0.28206 * 9 8 7 26 26 C 1.38163 * 119.94691 * 359.44658 * 25 9 8 27 27 C 1.38247 * 120.05177 * 0.57165 * 26 25 9 28 28 H 0.96698 * 113.99896 * 299.99737 * 1 2 3 29 29 H 1.09006 * 109.47028 * 240.00253 * 2 1 3 30 30 H 1.07999 * 120.02957 * 0.02977 * 8 7 2 31 31 H 1.08996 * 109.46858 * 60.00453 * 11 10 9 32 32 H 1.08994 * 109.47108 * 300.00154 * 11 10 9 33 33 H 0.97003 * 119.99857 * 0.02562 * 14 12 11 34 34 H 1.09002 * 108.88449 * 325.00176 * 15 14 12 35 35 H 1.09000 * 109.51500 * 318.28511 * 16 15 14 36 36 H 1.08995 * 109.51568 * 78.44192 * 16 15 14 37 37 H 1.09001 * 109.95244 * 183.79307 * 17 16 15 38 38 H 1.09001 * 110.05610 * 62.56732 * 17 16 15 39 39 H 1.09003 * 111.49436 * 215.64851 * 19 18 17 40 40 H 1.08996 * 111.49875 * 340.76759 * 19 18 17 41 41 H 1.08996 * 109.42301 * 279.25786 * 20 19 18 42 42 H 1.09000 * 109.42163 * 159.44216 * 20 19 18 43 43 H 1.08996 * 109.10123 * 191.68312 * 21 20 19 44 44 H 1.08997 * 109.10021 * 72.70589 * 21 20 19 45 45 H 1.09006 * 111.15032 * 270.09775 * 22 21 20 46 46 H 1.09010 * 111.18053 * 145.90343 * 22 21 20 47 47 H 1.09000 * 109.93252 * 197.71398 * 23 18 17 48 48 H 1.08996 * 110.00752 * 76.52083 * 23 18 17 49 49 H 1.08999 * 109.51716 * 281.55326 * 24 15 14 50 50 H 1.08998 * 109.51536 * 41.66307 * 24 15 14 51 51 H 1.08009 * 120.02986 * 179.72035 * 25 9 8 52 52 H 1.08001 * 119.97443 * 180.27593 * 26 25 9 53 53 H 1.07996 * 119.93913 * 179.70341 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 1 3.5351 1.7563 -0.0006 5 1 1.5550 2.4564 -1.2124 6 1 1.5550 2.4564 1.2125 7 6 1.9313 -0.7105 1.2304 8 6 1.6844 -2.0592 1.3975 9 6 2.1477 -2.7129 2.5303 10 8 1.9065 -4.0399 2.6968 11 6 2.4128 -4.6469 3.8875 12 6 2.0519 -6.1100 3.8978 13 8 1.4235 -6.5861 2.9763 14 7 2.4275 -6.8894 4.9313 15 6 2.0762 -8.3116 4.9417 16 6 3.1103 -9.0823 4.1262 17 6 2.5305 -10.4573 3.7371 18 14 2.0524 -11.3080 5.3112 19 6 0.9799 -12.8127 4.9784 20 6 2.0813 -13.9202 5.0608 21 6 3.0634 -13.5939 6.1982 22 6 3.5318 -12.1104 6.1363 23 6 1.2068 -10.1128 6.4455 24 6 2.0048 -8.7926 6.3881 25 6 2.8527 -2.0084 3.4951 26 6 3.1019 -0.6607 3.3206 27 6 2.6389 -0.0116 2.1912 28 1 -0.3933 0.4417 0.7651 29 1 1.7923 -0.5138 -0.8901 30 1 1.1321 -2.6047 0.6467 31 1 1.9760 -4.1584 4.7584 32 1 3.4972 -4.5403 3.9168 33 1 2.9298 -6.5084 5.6685 34 1 1.0971 -8.4365 4.4792 35 1 3.3520 -8.5228 3.2226 36 1 4.0128 -9.2218 4.7212 37 1 3.2843 -11.0436 3.2117 38 1 1.6531 -10.3272 3.1035 39 1 0.2237 -12.9433 5.7525 40 1 0.5292 -12.7706 3.9869 41 1 2.6227 -13.9638 4.1158 42 1 1.6116 -14.8848 5.2532 43 1 3.9329 -14.2461 6.1168 44 1 2.5734 -13.7736 7.1551 45 1 4.4279 -12.0061 5.5245 46 1 3.6919 -11.7059 7.1358 47 1 1.2064 -10.5030 7.4632 48 1 0.1829 -9.9431 6.1123 49 1 3.0132 -8.9600 6.7664 50 1 1.5073 -8.0389 6.9984 51 1 3.2104 -2.5140 4.3800 52 1 3.6546 -0.1128 4.0694 53 1 2.8306 1.0429 2.0589 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_15739290_4860298.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 14:02:29 Heat of formation + Delta-G solvation = -125.070808 kcal Electronic energy + Delta-G solvation = -29739.884177 eV Core-core repulsion = 25699.615596 eV Total energy + Delta-G solvation = -4040.268581 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 363.182 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.60649 -40.77524 -39.11326 -37.84500 -37.19777 -36.14381 -34.12245 -32.48555 -32.08482 -31.65512 -29.68655 -29.48650 -26.95880 -26.37960 -24.68692 -23.71675 -23.62044 -22.64002 -21.67104 -21.43153 -20.89415 -19.33274 -18.50951 -17.91473 -17.44665 -17.32447 -17.11382 -16.73749 -16.19801 -16.10110 -15.93214 -15.67161 -15.64600 -15.44756 -14.99170 -14.96707 -14.91803 -14.41977 -14.18600 -14.04014 -13.70731 -13.47340 -13.38035 -13.23469 -13.15075 -12.98724 -12.83754 -12.59897 -12.37899 -12.20287 -12.17374 -12.12353 -12.07095 -11.97132 -11.95344 -11.73564 -11.54472 -11.34633 -11.01337 -10.46965 -10.38742 -10.30907 -10.18376 -10.07925 -9.94409 -9.30613 0.18985 0.36271 1.14823 1.43865 1.47511 1.48985 1.54647 1.79906 1.90486 1.92281 1.97454 2.59073 2.65069 2.67874 3.49977 3.55122 3.68669 3.74314 3.84125 3.98613 4.01202 4.07912 4.10543 4.12510 4.15669 4.19426 4.20761 4.32103 4.36414 4.41537 4.49782 4.54551 4.63573 4.66253 4.68072 4.68848 4.80757 4.84028 4.96880 5.09671 5.12750 5.14885 5.21772 5.22281 5.23855 5.26094 5.33601 5.34361 5.37490 5.41977 5.45334 5.49197 5.53943 5.59964 5.67341 6.27045 6.48446 6.68130 7.14505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.555 6.555 2 C -0.091 4.091 3 Si 0.997 3.003 4 H -0.253 1.253 5 H -0.278 1.278 6 H -0.244 1.244 7 C -0.084 4.084 8 C -0.145 4.145 9 C 0.114 3.886 10 O -0.322 6.322 11 C 0.037 3.963 12 C 0.509 3.491 13 O -0.573 6.573 14 N -0.707 5.707 15 C 0.133 3.867 16 C -0.117 4.117 17 C -0.425 4.425 18 Si 1.055 2.945 19 C -0.427 4.427 20 C -0.128 4.128 21 C -0.123 4.123 22 C -0.408 4.408 23 C -0.411 4.411 24 C -0.113 4.113 25 C -0.202 4.202 26 C -0.071 4.071 27 C -0.171 4.171 28 H 0.389 0.611 29 H 0.118 0.882 30 H 0.117 0.883 31 H 0.126 0.874 32 H 0.125 0.875 33 H 0.421 0.579 34 H 0.064 0.936 35 H 0.040 0.960 36 H 0.091 0.909 37 H 0.079 0.921 38 H 0.062 0.938 39 H 0.080 0.920 40 H 0.071 0.929 41 H 0.061 0.939 42 H 0.058 0.942 43 H 0.058 0.942 44 H 0.065 0.935 45 H 0.077 0.923 46 H 0.091 0.909 47 H 0.098 0.902 48 H 0.075 0.925 49 H 0.096 0.904 50 H 0.082 0.918 51 H 0.161 0.839 52 H 0.160 0.840 53 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.906 2.205 8.858 10.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.362 6.362 2 C -0.200 4.200 3 Si 0.820 3.180 4 H -0.177 1.177 5 H -0.203 1.203 6 H -0.168 1.168 7 C -0.084 4.084 8 C -0.164 4.164 9 C 0.069 3.931 10 O -0.236 6.236 11 C -0.040 4.040 12 C 0.295 3.705 13 O -0.451 6.451 14 N -0.361 5.361 15 C 0.029 3.971 16 C -0.155 4.155 17 C -0.510 4.510 18 Si 1.245 2.755 19 C -0.512 4.512 20 C -0.166 4.166 21 C -0.160 4.160 22 C -0.494 4.494 23 C -0.498 4.498 24 C -0.150 4.150 25 C -0.221 4.221 26 C -0.089 4.089 27 C -0.189 4.189 28 H 0.238 0.762 29 H 0.136 0.864 30 H 0.135 0.865 31 H 0.143 0.857 32 H 0.142 0.858 33 H 0.259 0.741 34 H 0.083 0.917 35 H 0.059 0.941 36 H 0.109 0.891 37 H 0.098 0.902 38 H 0.081 0.919 39 H 0.099 0.901 40 H 0.090 0.910 41 H 0.080 0.920 42 H 0.077 0.923 43 H 0.077 0.923 44 H 0.084 0.916 45 H 0.096 0.904 46 H 0.110 0.890 47 H 0.117 0.883 48 H 0.094 0.906 49 H 0.115 0.885 50 H 0.100 0.900 51 H 0.179 0.821 52 H 0.177 0.823 53 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 4.739 2.289 7.504 9.166 hybrid contribution -0.208 -0.532 0.200 0.606 sum 4.531 1.757 7.704 9.109 Atomic orbital electron populations 1.86501 1.17574 1.82089 1.50032 1.25260 0.84941 1.11831 0.98014 0.85018 0.79705 0.73213 0.80081 1.17715 1.20343 1.16776 1.20211 0.98016 0.93171 0.97025 1.20317 1.03976 0.94432 0.97676 1.19224 0.96172 0.82336 0.95374 1.86133 1.74610 1.20776 1.42049 1.22748 1.02535 0.90184 0.88581 1.20582 0.78932 0.88593 0.82346 1.90762 1.41062 1.76063 1.37215 1.45854 1.57603 1.09632 1.22981 1.21176 0.98792 0.79227 0.97893 1.21662 0.98913 0.95454 0.99481 1.26417 1.04819 1.02900 1.16825 0.78810 0.66724 0.64826 0.65111 1.26876 1.04593 1.15111 1.04574 1.22086 0.96191 0.99246 0.99045 1.21874 0.98473 0.96940 0.98754 1.26569 1.12667 1.01873 1.08329 1.26175 1.05621 1.06223 1.11770 1.21605 1.02748 0.97882 0.92800 1.21617 1.03679 0.96225 1.00554 1.21290 0.96855 0.93680 0.97082 1.21240 1.01453 1.00677 0.95489 0.76171 0.86445 0.86501 0.85674 0.85752 0.74057 0.91728 0.94134 0.89100 0.90226 0.91905 0.90139 0.91036 0.92013 0.92290 0.92282 0.91648 0.90365 0.89046 0.88305 0.90586 0.88529 0.89973 0.82140 0.82263 0.84537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -1.90 12.83 -148.98 -1.91 -3.81 16 2 C -0.09 -0.13 2.80 71.24 0.20 0.07 16 3 Si 1.00 -1.13 25.14 68.60 1.72 0.60 16 4 H -0.25 0.18 7.11 99.48 0.71 0.88 16 5 H -0.28 -0.75 7.11 99.48 0.71 -0.04 16 6 H -0.24 0.59 7.04 99.48 0.70 1.29 16 7 C -0.08 -0.25 5.35 -19.88 -0.11 -0.36 16 8 C -0.15 -1.01 9.62 22.37 0.22 -0.79 16 9 C 0.11 0.57 6.69 22.51 0.15 0.72 16 10 O -0.32 -2.51 9.67 -73.37 -0.71 -3.22 16 11 C 0.04 -0.08 5.22 71.23 0.37 0.30 16 12 C 0.51 2.03 7.68 87.65 0.67 2.71 16 13 O -0.57 -9.25 16.14 16.03 0.26 -8.99 16 14 N -0.71 2.57 5.02 -443.83 -2.23 0.34 16 15 C 0.13 -0.20 1.98 44.72 0.09 -0.11 16 16 C -0.12 0.04 5.23 30.87 0.16 0.20 16 17 C -0.43 0.07 4.96 72.39 0.36 0.43 16 18 Si 1.05 -5.35 10.56 68.60 0.72 -4.63 16 19 C -0.43 0.43 5.94 73.17 0.43 0.87 16 20 C -0.13 0.02 5.97 32.04 0.19 0.21 16 21 C -0.12 0.21 6.09 31.78 0.19 0.40 16 22 C -0.41 1.87 5.84 72.91 0.43 2.30 16 23 C -0.41 2.49 4.96 72.45 0.36 2.85 16 24 C -0.11 0.82 5.12 30.92 0.16 0.97 16 25 C -0.20 0.35 9.04 22.37 0.20 0.55 16 26 C -0.07 0.20 10.04 22.25 0.22 0.42 16 27 C -0.17 0.05 8.66 22.28 0.19 0.25 16 28 H 0.39 -1.41 8.70 -74.06 -0.64 -2.05 16 29 H 0.12 0.11 7.96 -2.38 -0.02 0.09 16 30 H 0.12 1.14 8.06 -2.91 -0.02 1.12 16 31 H 0.13 -1.09 7.65 -2.39 -0.02 -1.11 16 32 H 0.12 -1.06 7.67 -2.39 -0.02 -1.08 16 33 H 0.42 -5.08 8.59 -92.71 -0.80 -5.87 16 34 H 0.06 0.29 7.25 -2.39 -0.02 0.28 16 35 H 0.04 0.23 7.94 -2.39 -0.02 0.21 16 36 H 0.09 -0.48 7.75 -2.39 -0.02 -0.49 16 37 H 0.08 -0.02 7.97 -2.39 -0.02 -0.04 16 38 H 0.06 0.21 7.97 -2.39 -0.02 0.19 16 39 H 0.08 -0.12 8.04 -2.39 -0.02 -0.14 16 40 H 0.07 0.02 8.04 -2.39 -0.02 0.00 16 41 H 0.06 -0.01 8.14 -2.39 -0.02 -0.03 16 42 H 0.06 0.04 8.14 -2.39 -0.02 0.02 16 43 H 0.06 -0.06 8.14 -2.39 -0.02 -0.08 16 44 H 0.06 -0.16 8.14 -2.39 -0.02 -0.18 16 45 H 0.08 -0.34 8.03 -2.38 -0.02 -0.36 16 46 H 0.09 -0.62 8.03 -2.38 -0.02 -0.64 16 47 H 0.10 -0.80 7.97 -2.39 -0.02 -0.82 16 48 H 0.08 -0.32 7.97 -2.39 -0.02 -0.34 16 49 H 0.10 -1.10 7.76 -2.39 -0.02 -1.12 16 50 H 0.08 -0.68 8.13 -2.39 -0.02 -0.70 16 51 H 0.16 -1.42 6.30 -2.91 -0.02 -1.44 16 52 H 0.16 -1.41 8.06 -2.91 -0.02 -1.44 16 53 H 0.14 -0.50 4.86 -2.91 -0.01 -0.51 16 Total: 0.00 -24.70 415.09 2.57 -22.13 By element: Atomic # 1 Polarization: -14.62 SS G_CDS: 0.22 Total: -14.41 kcal Atomic # 6 Polarization: 7.50 SS G_CDS: 4.49 Total: 11.99 kcal Atomic # 7 Polarization: 2.57 SS G_CDS: -2.23 Total: 0.34 kcal Atomic # 8 Polarization: -13.66 SS G_CDS: -2.36 Total: -16.02 kcal Atomic # 14 Polarization: -6.48 SS G_CDS: 2.45 Total: -4.03 kcal Total: -24.70 2.57 -22.13 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_15739290_4860298.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.939 kcal (2) G-P(sol) polarization free energy of solvation -24.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds