Wall clock time and date at job start Thu Mar 4 2021 14:42:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86305 * 109.46645 * 2 1 4 4 H 1.48499 * 109.46850 * 299.99889 * 3 2 1 5 5 H 1.48499 * 109.47126 * 59.99874 * 3 2 1 6 6 H 1.48496 * 109.46885 * 180.02562 * 3 2 1 7 7 C 1.50699 * 109.47152 * 119.99802 * 2 1 3 8 8 C 1.36447 * 120.29589 * 120.00399 * 7 2 1 9 9 C 1.40087 * 119.25876 * 179.97438 * 8 7 2 10 10 C 1.40846 * 132.87055 * 179.97438 * 9 8 7 11 11 C 1.46568 * 126.57997 * 0.03108 * 10 9 8 12 12 O 1.21721 * 119.99776 * 359.97438 * 11 10 9 13 13 N 1.34774 * 119.99885 * 179.97438 * 11 10 9 14 14 C 1.46504 * 119.99993 * 179.97438 * 13 11 10 15 15 C 1.52555 * 108.99201 * 276.16184 * 14 13 11 16 16 C 1.54021 * 109.45873 * 162.04457 * 15 14 13 17 17 Si 1.86511 * 107.16060 * 58.31694 * 16 15 14 18 18 C 1.86517 * 110.13887 * 75.81705 * 17 16 15 19 19 C 1.53974 * 107.20840 * 164.96542 * 18 17 16 20 20 C 1.52551 * 109.46901 * 301.76495 * 19 18 17 21 21 C 1.52546 * 111.91521 * 77.26854 * 20 19 18 22 22 C 1.53946 * 109.49398 * 282.74594 * 21 20 19 23 23 C 1.86533 * 108.14490 * 315.43492 * 17 16 15 24 24 C 1.52553 * 108.99621 * 153.83712 * 14 13 11 25 25 C 1.40559 * 106.84156 * 180.02562 * 10 9 8 26 26 N 1.30744 * 108.74194 * 0.02562 * 25 10 9 27 27 N 1.36582 * 120.22417 * 0.02562 * 9 8 7 28 28 C 1.36235 * 120.08421 * 0.02562 * 27 9 8 29 29 C 1.35189 * 120.70855 * 359.70059 * 28 27 9 30 30 H 0.96700 * 114.00311 * 60.00382 * 1 2 3 31 31 H 1.08997 * 109.47332 * 240.00042 * 2 1 3 32 32 H 1.08002 * 120.37200 * 0.02562 * 8 7 2 33 33 H 0.96998 * 120.00337 * 359.97438 * 13 11 10 34 34 H 1.09003 * 108.97494 * 34.99460 * 14 13 11 35 35 H 1.09002 * 109.46948 * 282.11753 * 15 14 13 36 36 H 1.09005 * 109.46991 * 42.11068 * 15 14 13 37 37 H 1.09009 * 109.96807 * 298.89223 * 16 15 14 38 38 H 1.08998 * 109.96369 * 177.74895 * 16 15 14 39 39 H 1.08996 * 109.90769 * 284.38966 * 18 17 16 40 40 H 1.09004 * 109.90608 * 45.53768 * 18 17 16 41 41 H 1.09002 * 109.47185 * 181.76805 * 19 18 17 42 42 H 1.08996 * 109.47135 * 61.76651 * 19 18 17 43 43 H 1.09001 * 108.99506 * 316.64011 * 20 19 18 44 44 H 1.09003 * 108.92553 * 197.85530 * 20 19 18 45 45 H 1.09002 * 109.47065 * 162.73979 * 21 20 19 46 46 H 1.09005 * 109.46472 * 42.75152 * 21 20 19 47 47 H 1.09008 * 109.90582 * 298.77779 * 22 21 20 48 48 H 1.08996 * 109.91463 * 177.63127 * 22 21 20 49 49 H 1.09002 * 109.91151 * 285.11847 * 23 17 16 50 50 H 1.09002 * 109.97647 * 164.00053 * 23 17 16 51 51 H 1.09007 * 109.46919 * 317.90126 * 24 14 13 52 52 H 1.08997 * 109.47153 * 77.89643 * 24 14 13 53 53 H 1.08001 * 125.62732 * 180.02562 * 25 10 9 54 54 H 1.08004 * 119.64903 * 180.02562 * 28 27 9 55 55 H 1.07996 * 119.84781 * 180.29509 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7566 0.0000 4 1 1.5548 2.4565 -1.2125 5 1 1.5548 2.4566 1.2125 6 1 3.5349 1.7566 -0.0006 7 6 1.9314 -0.7104 1.2305 8 6 2.7163 -1.8202 1.1123 9 6 3.1716 -2.4632 2.2706 10 6 3.9754 -3.6003 2.4823 11 6 4.5758 -4.4500 1.4500 12 8 4.3961 -4.1969 0.2730 13 7 5.3269 -5.5116 1.8039 14 6 5.9266 -6.3613 0.7721 15 6 4.8958 -7.3883 0.3138 16 6 5.3264 -7.9774 -1.0425 17 14 7.0122 -8.7383 -0.8017 18 6 6.8607 -10.3610 0.1054 19 6 8.1985 -11.1042 -0.0640 20 6 8.4853 -11.3027 -1.5491 21 6 8.9927 -10.0233 -2.2070 22 6 7.8102 -9.0692 -2.4548 23 6 8.0521 -7.5456 0.1860 24 6 7.1763 -7.0262 1.3409 25 6 4.0913 -3.7637 3.8736 26 7 3.4182 -2.8122 4.4659 27 7 2.8315 -1.9823 3.5029 28 6 2.0465 -0.8741 3.6106 29 6 1.6001 -0.2342 2.5065 30 1 -0.3934 0.4416 -0.7651 31 1 1.7924 -0.5138 -0.8899 32 1 2.9841 -2.1983 0.1368 33 1 5.4704 -5.7131 2.7418 34 1 6.2105 -5.7403 -0.0775 35 1 4.8254 -8.1869 1.0523 36 1 3.9243 -6.9054 0.2072 37 1 5.3795 -7.1873 -1.7916 38 1 4.6161 -8.7413 -1.3589 39 1 6.6688 -10.1786 1.1627 40 1 6.0510 -10.9516 -0.3233 41 1 8.1395 -12.0753 0.4276 42 1 8.9996 -10.5175 0.3855 43 1 7.5693 -11.6190 -2.0482 44 1 9.2382 -12.0827 -1.6626 45 1 9.4679 -10.2672 -3.1572 46 1 9.7177 -9.5407 -1.5516 47 1 7.0908 -9.5366 -3.1272 48 1 8.1707 -8.1355 -2.8864 49 1 8.3645 -6.7142 -0.4458 50 1 8.9277 -8.0574 0.5854 51 1 7.7401 -6.2995 1.9260 52 1 6.8854 -7.8600 1.9798 53 1 4.6450 -4.5463 4.3711 54 1 1.7821 -0.4995 4.5885 55 1 0.9825 0.6459 2.6080 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_15739362_11618758.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 14:42:54 Heat of formation + Delta-G solvation = -19.420644 kcal Electronic energy + Delta-G solvation = -33611.979722 eV Core-core repulsion = 29352.132946 eV Total energy + Delta-G solvation = -4259.846776 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 387.189 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -43.32679 -40.67926 -39.18674 -37.76000 -37.28214 -37.26973 -34.37241 -33.77360 -32.18733 -31.99186 -31.84224 -30.34241 -27.73078 -27.22500 -26.31499 -24.83650 -23.71187 -23.44174 -23.21483 -22.88586 -21.42759 -21.07532 -21.00171 -19.16694 -18.46264 -18.01537 -17.60640 -17.04339 -16.95535 -16.68962 -16.31792 -16.04513 -15.93436 -15.74822 -15.66222 -15.18436 -15.04578 -14.91475 -14.74625 -14.67312 -14.33120 -14.12728 -13.70542 -13.64304 -13.33924 -13.32800 -13.22762 -13.09151 -13.03550 -12.74432 -12.59565 -12.50059 -12.26647 -12.21829 -12.12620 -12.09591 -11.92244 -11.86684 -11.84050 -11.60352 -11.54275 -11.38051 -10.93731 -10.76346 -10.26637 -10.19083 -10.14599 -10.06231 -9.97098 -8.81322 -0.61181 -0.14378 1.00312 1.00874 1.10160 1.47694 1.51199 1.89520 1.89758 1.91757 1.99857 2.02892 2.27420 2.48857 2.69904 3.02750 3.17210 3.50929 3.70576 3.72050 3.80241 3.87400 3.98418 4.06077 4.11635 4.15485 4.21936 4.25496 4.33139 4.35070 4.39312 4.40193 4.51769 4.55958 4.57825 4.66647 4.69553 4.76361 4.84700 4.86719 4.91650 4.98701 5.05781 5.10157 5.14441 5.18955 5.23873 5.25637 5.27407 5.31374 5.32683 5.43154 5.44258 5.46537 5.51909 5.55433 5.60901 5.63509 5.71070 6.27020 6.65204 6.75123 7.33609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.555 6.555 2 C -0.086 4.086 3 Si 0.986 3.014 4 H -0.241 1.241 5 H -0.243 1.243 6 H -0.275 1.275 7 C -0.026 4.026 8 C -0.120 4.120 9 C 0.148 3.852 10 C -0.340 4.340 11 C 0.597 3.403 12 O -0.590 6.590 13 N -0.713 5.713 14 C 0.139 3.861 15 C -0.115 4.115 16 C -0.422 4.422 17 Si 1.056 2.944 18 C -0.409 4.409 19 C -0.112 4.112 20 C -0.135 4.135 21 C -0.112 4.112 22 C -0.423 4.423 23 C -0.407 4.407 24 C -0.113 4.113 25 C 0.131 3.869 26 N -0.339 5.339 27 N -0.274 5.274 28 C 0.110 3.890 29 C -0.147 4.147 30 H 0.404 0.596 31 H 0.091 0.909 32 H 0.152 0.848 33 H 0.413 0.587 34 H 0.066 0.934 35 H 0.084 0.916 36 H 0.038 0.962 37 H 0.063 0.937 38 H 0.076 0.924 39 H 0.084 0.916 40 H 0.072 0.928 41 H 0.059 0.941 42 H 0.073 0.927 43 H 0.060 0.940 44 H 0.061 0.939 45 H 0.054 0.946 46 H 0.072 0.928 47 H 0.070 0.930 48 H 0.072 0.928 49 H 0.073 0.927 50 H 0.094 0.906 51 H 0.077 0.923 52 H 0.091 0.909 53 H 0.236 0.764 54 H 0.207 0.793 55 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.616 1.094 1.740 2.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.365 6.365 2 C -0.195 4.195 3 Si 0.805 3.195 4 H -0.164 1.164 5 H -0.166 1.166 6 H -0.200 1.200 7 C -0.032 4.032 8 C -0.139 4.139 9 C 0.027 3.973 10 C -0.355 4.355 11 C 0.387 3.613 12 O -0.473 6.473 13 N -0.364 5.364 14 C 0.035 3.965 15 C -0.154 4.154 16 C -0.506 4.506 17 Si 1.246 2.754 18 C -0.496 4.496 19 C -0.149 4.149 20 C -0.173 4.173 21 C -0.150 4.150 22 C -0.508 4.508 23 C -0.494 4.494 24 C -0.151 4.151 25 C -0.050 4.050 26 N -0.159 5.159 27 N -0.038 5.038 28 C -0.015 4.015 29 C -0.168 4.168 30 H 0.255 0.745 31 H 0.109 0.891 32 H 0.170 0.830 33 H 0.249 0.751 34 H 0.085 0.915 35 H 0.102 0.898 36 H 0.056 0.944 37 H 0.082 0.918 38 H 0.095 0.905 39 H 0.103 0.897 40 H 0.091 0.909 41 H 0.078 0.922 42 H 0.091 0.909 43 H 0.079 0.921 44 H 0.080 0.920 45 H 0.073 0.927 46 H 0.090 0.910 47 H 0.089 0.911 48 H 0.091 0.909 49 H 0.092 0.908 50 H 0.113 0.887 51 H 0.095 0.905 52 H 0.110 0.890 53 H 0.252 0.748 54 H 0.223 0.777 55 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 0.576 2.203 2.705 3.536 hybrid contribution -0.141 -0.643 -1.230 1.395 sum 0.436 1.560 1.475 2.191 Atomic orbital electron populations 1.86435 1.16252 1.82444 1.51329 1.24812 0.86456 1.11391 0.96804 0.85215 0.78935 0.73080 0.82233 1.16404 1.16603 1.19999 1.19768 0.94162 0.93414 0.95869 1.20669 1.00211 0.95337 0.97721 1.19533 0.96191 0.94786 0.86783 1.19744 1.17168 1.04170 0.94397 1.17022 0.77533 0.79939 0.86838 1.90743 1.62961 1.73422 1.20134 1.45736 1.51791 1.27817 1.11035 1.21067 0.93090 0.91434 0.90935 1.21616 0.97903 0.98284 0.97571 1.26483 1.19416 1.06181 0.98501 0.78625 0.64519 0.66133 0.66151 1.26304 0.99425 1.15255 1.08578 1.21279 0.97328 1.00787 0.95530 1.21533 1.01463 0.97950 0.96314 1.21269 0.97586 0.95467 1.00640 1.26437 1.04348 1.02505 1.17470 1.26231 1.07067 1.10581 1.05522 1.21527 0.93686 1.01249 0.98620 1.24630 0.93445 0.95759 0.91150 1.77557 1.19618 1.07259 1.11467 1.46321 1.32408 1.19598 1.05423 1.22235 0.91365 0.84425 1.03503 1.21209 1.02736 1.03243 0.89622 0.74498 0.89089 0.82993 0.75063 0.91533 0.89763 0.94353 0.91825 0.90473 0.89732 0.90912 0.92234 0.90876 0.92088 0.92047 0.92707 0.90970 0.91117 0.90933 0.90770 0.88715 0.90465 0.89007 0.74752 0.77653 0.79310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 1.45 12.76 -148.98 -1.90 -0.45 16 2 C -0.09 0.19 2.81 71.24 0.20 0.39 16 3 Si 0.99 -3.57 27.25 68.60 1.87 -1.70 16 4 H -0.24 1.04 7.11 99.48 0.71 1.75 16 5 H -0.24 0.88 7.03 99.48 0.70 1.58 16 6 H -0.28 -0.25 7.11 99.48 0.71 0.46 16 7 C -0.03 -0.07 4.53 -19.82 -0.09 -0.16 16 8 C -0.12 -0.90 9.35 22.30 0.21 -0.69 16 9 C 0.15 1.40 6.76 39.49 0.27 1.66 16 10 C -0.34 -2.73 6.17 -19.90 -0.12 -2.85 16 11 C 0.60 5.64 7.57 86.42 0.65 6.29 16 12 O -0.59 -9.93 15.35 -4.42 -0.07 -10.00 16 13 N -0.71 -1.26 5.02 -447.99 -2.25 -3.51 16 14 C 0.14 0.22 2.02 44.69 0.09 0.31 16 15 C -0.12 -0.27 5.20 30.79 0.16 -0.11 16 16 C -0.42 -0.47 4.97 72.33 0.36 -0.11 16 17 Si 1.06 -4.14 9.18 68.60 0.63 -3.51 16 18 C -0.41 1.52 4.97 72.31 0.36 1.88 16 19 C -0.11 0.32 5.64 30.77 0.17 0.49 16 20 C -0.14 0.19 5.40 30.29 0.16 0.35 16 21 C -0.11 0.13 5.63 30.76 0.17 0.30 16 22 C -0.42 0.45 4.97 72.30 0.36 0.81 16 23 C -0.41 1.67 4.97 72.31 0.36 2.03 16 24 C -0.11 0.47 5.08 30.77 0.16 0.63 16 25 C 0.13 0.38 11.44 85.42 0.98 1.35 16 26 N -0.34 -2.34 12.57 -56.61 -0.71 -3.05 16 27 N -0.27 -1.88 3.86 -187.28 -0.72 -2.60 16 28 C 0.11 0.06 11.17 83.31 0.93 0.99 16 29 C -0.15 0.11 8.67 22.03 0.19 0.30 16 30 H 0.40 -4.68 8.74 -74.06 -0.65 -5.33 16 31 H 0.09 -0.35 7.71 -2.39 -0.02 -0.37 16 32 H 0.15 1.37 7.01 -2.91 -0.02 1.35 16 33 H 0.41 -2.18 7.51 -92.71 -0.70 -2.88 16 34 H 0.07 0.45 7.29 -2.39 -0.02 0.43 16 35 H 0.08 -0.16 7.71 -2.39 -0.02 -0.18 16 36 H 0.04 0.32 7.95 -2.38 -0.02 0.31 16 37 H 0.06 0.26 7.98 -2.38 -0.02 0.24 16 38 H 0.08 0.06 7.98 -2.39 -0.02 0.04 16 39 H 0.08 -0.46 7.98 -2.39 -0.02 -0.48 16 40 H 0.07 -0.20 7.98 -2.39 -0.02 -0.22 16 41 H 0.06 -0.13 8.14 -2.39 -0.02 -0.15 16 42 H 0.07 -0.35 7.72 -2.39 -0.02 -0.37 16 43 H 0.06 -0.04 7.89 -2.39 -0.02 -0.06 16 44 H 0.06 -0.09 8.14 -2.39 -0.02 -0.11 16 45 H 0.05 0.00 8.14 -2.39 -0.02 -0.02 16 46 H 0.07 -0.22 7.72 -2.38 -0.02 -0.24 16 47 H 0.07 -0.01 7.98 -2.38 -0.02 -0.03 16 48 H 0.07 -0.05 7.98 -2.39 -0.02 -0.07 16 49 H 0.07 -0.19 7.98 -2.39 -0.02 -0.21 16 50 H 0.09 -0.58 7.98 -2.39 -0.02 -0.60 16 51 H 0.08 -0.36 8.13 -2.38 -0.02 -0.38 16 52 H 0.09 -0.73 7.71 -2.39 -0.02 -0.75 16 53 H 0.24 -1.72 7.46 -2.91 -0.02 -1.74 16 54 H 0.21 -1.30 8.06 -2.91 -0.02 -1.33 16 55 H 0.19 -1.23 7.48 -2.91 -0.02 -1.25 16 Total: 0.00 -24.29 428.94 2.72 -21.56 By element: Atomic # 1 Polarization: -10.92 SS G_CDS: 0.30 Total: -10.61 kcal Atomic # 6 Polarization: 8.29 SS G_CDS: 5.57 Total: 13.86 kcal Atomic # 7 Polarization: -5.47 SS G_CDS: -3.68 Total: -9.16 kcal Atomic # 8 Polarization: -8.48 SS G_CDS: -1.97 Total: -10.45 kcal Atomic # 14 Polarization: -7.71 SS G_CDS: 2.50 Total: -5.21 kcal Total: -24.29 2.72 -21.56 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_15739362_11618758.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.143 kcal (2) G-P(sol) polarization free energy of solvation -24.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds