Wall clock time and date at job start Thu Mar 4 2021 15:16:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42896 * 1 3 3 Si 1.86301 * 109.46974 * 2 1 4 4 H 1.48506 * 109.47113 * 59.99965 * 3 2 1 5 5 H 1.48503 * 109.46998 * 179.97438 * 3 2 1 6 6 H 1.48500 * 109.47376 * 300.00192 * 3 2 1 7 7 C 1.50701 * 109.47417 * 120.00123 * 2 1 3 8 8 C 1.37938 * 119.92246 * 64.72350 * 7 2 1 9 9 C 1.39598 * 119.87283 * 179.77351 * 8 7 2 10 10 C 1.47849 * 120.13458 * 180.25295 * 9 8 7 11 11 O 1.21547 * 120.00725 * 0.25427 * 10 9 8 12 12 N 1.34789 * 119.99371 * 180.24947 * 10 9 8 13 13 C 1.46501 * 119.99329 * 180.02562 * 12 10 9 14 14 C 1.52561 * 108.99458 * 276.15882 * 13 12 10 15 15 C 1.54015 * 109.45620 * 162.04844 * 14 13 12 16 16 Si 1.86523 * 107.15880 * 58.32480 * 15 14 13 17 17 C 1.86515 * 110.13752 * 75.81255 * 16 15 14 18 18 C 1.53975 * 107.20398 * 164.96579 * 17 16 15 19 19 C 1.52546 * 109.46963 * 301.76070 * 18 17 16 20 20 C 1.52559 * 111.91567 * 77.27311 * 19 18 17 21 21 C 1.53956 * 109.48594 * 282.74570 * 20 19 18 22 22 C 1.86531 * 108.14235 * 315.42644 * 16 15 14 23 23 C 1.52562 * 108.98652 * 153.83916 * 13 12 10 24 24 C 1.39536 * 119.72114 * 0.50240 * 9 8 7 25 25 C 1.38078 * 119.84452 * 359.75021 * 24 9 8 26 26 Br 1.89091 * 119.93919 * 180.02562 * 25 24 9 27 27 C 1.38367 * 119.92112 * 245.00350 * 7 2 1 28 28 H 0.96708 * 114.00101 * 299.99304 * 1 2 3 29 29 H 1.09002 * 109.46984 * 240.00143 * 2 1 3 30 30 H 1.08004 * 120.06195 * 359.97438 * 8 7 2 31 31 H 0.96999 * 119.99872 * 0.02562 * 12 10 9 32 32 H 1.08996 * 108.98277 * 35.00238 * 13 12 10 33 33 H 1.09000 * 109.46700 * 282.13061 * 14 13 12 34 34 H 1.09004 * 109.46414 * 42.11698 * 14 13 12 35 35 H 1.08993 * 109.97162 * 298.89340 * 15 14 13 36 36 H 1.09001 * 109.95752 * 177.74771 * 15 14 13 37 37 H 1.08993 * 109.90985 * 284.38582 * 17 16 15 38 38 H 1.08998 * 109.91372 * 45.53973 * 17 16 15 39 39 H 1.08999 * 109.47525 * 181.76904 * 18 17 16 40 40 H 1.08991 * 109.47215 * 61.76200 * 18 17 16 41 41 H 1.09000 * 108.99628 * 316.64413 * 19 18 17 42 42 H 1.08999 * 108.93186 * 197.85080 * 19 18 17 43 43 H 1.08995 * 109.46913 * 162.74133 * 20 19 18 44 44 H 1.08999 * 109.46138 * 42.74604 * 20 19 18 45 45 H 1.09000 * 109.90350 * 298.77290 * 21 20 19 46 46 H 1.08995 * 109.90464 * 177.62973 * 21 20 19 47 47 H 1.08997 * 109.91246 * 285.12233 * 22 16 15 48 48 H 1.09004 * 109.97427 * 164.00043 * 22 16 15 49 49 H 1.08993 * 109.47497 * 317.89473 * 23 13 12 50 50 H 1.09007 * 109.47336 * 77.90080 * 23 13 12 51 51 H 1.08005 * 120.07919 * 179.77452 * 24 9 8 52 52 H 1.07996 * 119.86001 * 359.95268 * 27 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 1 1.5549 2.4565 1.2125 5 1 3.5350 1.7565 0.0006 6 1 1.5549 2.4566 -1.2125 7 6 1.9314 -0.7104 1.2304 8 6 1.6795 -2.0561 1.3991 9 6 2.1495 -2.7142 2.5370 10 6 1.8876 -4.1576 2.7209 11 8 1.2661 -4.7749 1.8783 12 7 2.3384 -4.7891 3.8231 13 6 2.0794 -6.2196 4.0050 14 6 0.6903 -6.3997 4.6095 15 6 0.2218 -7.8511 4.3949 16 14 1.4846 -8.9620 5.2013 17 6 1.2744 -8.9340 7.0544 18 6 2.0630 -10.1292 7.6203 19 6 1.5385 -11.4222 7.0038 20 6 2.0509 -11.6235 5.5810 21 6 1.2606 -10.7193 4.6177 22 6 3.1823 -8.3432 4.7385 23 6 3.1674 -6.8116 4.8958 24 6 2.8628 -2.0028 3.5024 25 6 3.1038 -0.6550 3.3244 26 35 4.0708 0.3115 4.6307 27 6 2.6392 -0.0100 2.1911 28 1 -0.3934 0.4416 0.7652 29 1 1.7923 -0.5138 -0.8900 30 1 1.1226 -2.6002 0.6506 31 1 2.8342 -4.2965 4.4957 32 1 2.1099 -6.7118 3.0331 33 1 0.7278 -6.1827 5.6771 34 1 -0.0081 -5.7178 4.1245 35 1 0.1625 -8.0693 3.3287 36 1 -0.7534 -7.9997 4.8588 37 1 1.6709 -8.0028 7.4589 38 1 0.2192 -9.0311 7.3098 39 1 1.9392 -10.1666 8.7026 40 1 3.1197 -10.0143 7.3791 41 1 0.4490 -11.3910 6.9873 42 1 1.8597 -12.2629 7.6187 43 1 1.9189 -12.6660 5.2914 44 1 3.1089 -11.3652 5.5361 45 1 0.2040 -10.9863 4.6409 46 1 1.6493 -10.8265 3.6051 47 1 3.4049 -8.6079 3.7049 48 1 3.9304 -8.7771 5.4021 49 1 4.1363 -6.4069 4.6037 50 1 2.9650 -6.5551 5.9358 51 1 3.2259 -2.5054 4.3868 52 1 2.8305 1.0442 2.0560 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_15739362_12335870.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 15:16:54 Heat of formation + Delta-G solvation = -91.289209 kcal Electronic energy + Delta-G solvation = -30402.648671 eV Core-core repulsion = 26342.709159 eV Total energy + Delta-G solvation = -4059.939512 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 425.094 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -41.66711 -40.21896 -37.97458 -37.64576 -37.29524 -34.41854 -33.64293 -32.68090 -32.03261 -31.85071 -30.49256 -27.70895 -27.04951 -26.71891 -24.74783 -23.58519 -23.23136 -22.82670 -21.53190 -21.35019 -21.01884 -19.15465 -18.07166 -17.74151 -17.38369 -16.65920 -16.42743 -16.36173 -16.13474 -15.92589 -15.74723 -15.25205 -15.10837 -15.09474 -14.95930 -14.84204 -14.72073 -14.18238 -13.72242 -13.69694 -13.37371 -13.32500 -13.24125 -13.13235 -13.02428 -12.77379 -12.55907 -12.28926 -12.26534 -12.18046 -12.15934 -11.98309 -11.93576 -11.88062 -11.77012 -11.55816 -11.50968 -11.40923 -11.16945 -10.55079 -10.42092 -10.24075 -10.16851 -10.07849 -10.03196 -9.93143 -0.54092 -0.17944 0.39024 1.08080 1.40627 1.46678 1.53109 1.85404 1.87705 1.88852 1.97403 2.02524 2.46033 2.67680 3.26118 3.34496 3.54840 3.74044 3.77670 3.85644 3.94106 4.04154 4.05571 4.13831 4.17824 4.21235 4.30296 4.31908 4.35955 4.50422 4.52561 4.57349 4.62483 4.65416 4.73561 4.81399 4.83040 4.85253 4.91647 4.97198 5.04467 5.06316 5.15702 5.22340 5.24463 5.25726 5.29520 5.32585 5.37466 5.42229 5.44381 5.49926 5.50683 5.54721 5.68612 6.39190 6.63863 7.06237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.550 6.550 2 C -0.081 4.081 3 Si 0.969 3.031 4 H -0.243 1.243 5 H -0.249 1.249 6 H -0.269 1.269 7 C -0.116 4.116 8 C -0.026 4.026 9 C -0.135 4.135 10 C 0.558 3.442 11 O -0.570 6.570 12 N -0.709 5.709 13 C 0.134 3.866 14 C -0.116 4.116 15 C -0.422 4.422 16 Si 1.056 2.944 17 C -0.409 4.409 18 C -0.112 4.112 19 C -0.135 4.135 20 C -0.112 4.112 21 C -0.424 4.424 22 C -0.408 4.408 23 C -0.114 4.114 24 C -0.044 4.044 25 C -0.099 4.099 26 Br -0.031 7.031 27 C -0.074 4.074 28 H 0.390 0.610 29 H 0.129 0.871 30 H 0.136 0.864 31 H 0.414 0.586 32 H 0.070 0.930 33 H 0.086 0.914 34 H 0.041 0.959 35 H 0.063 0.937 36 H 0.078 0.922 37 H 0.084 0.916 38 H 0.072 0.928 39 H 0.059 0.941 40 H 0.073 0.927 41 H 0.060 0.940 42 H 0.060 0.940 43 H 0.054 0.946 44 H 0.072 0.928 45 H 0.070 0.930 46 H 0.071 0.929 47 H 0.074 0.926 48 H 0.095 0.905 49 H 0.078 0.922 50 H 0.092 0.908 51 H 0.163 0.837 52 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.187 1.125 4.722 5.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.357 6.357 2 C -0.191 4.191 3 Si 0.792 3.208 4 H -0.166 1.166 5 H -0.173 1.173 6 H -0.193 1.193 7 C -0.117 4.117 8 C -0.046 4.046 9 C -0.139 4.139 10 C 0.345 3.655 11 O -0.450 6.450 12 N -0.360 5.360 13 C 0.030 3.970 14 C -0.155 4.155 15 C -0.506 4.506 16 Si 1.246 2.754 17 C -0.496 4.496 18 C -0.149 4.149 19 C -0.173 4.173 20 C -0.150 4.150 21 C -0.509 4.509 22 C -0.494 4.494 23 C -0.152 4.152 24 C -0.065 4.065 25 C -0.179 4.179 26 Br 0.055 6.945 27 C -0.094 4.094 28 H 0.240 0.760 29 H 0.147 0.853 30 H 0.153 0.847 31 H 0.252 0.748 32 H 0.088 0.912 33 H 0.105 0.895 34 H 0.060 0.940 35 H 0.082 0.918 36 H 0.097 0.903 37 H 0.103 0.897 38 H 0.091 0.909 39 H 0.078 0.922 40 H 0.091 0.909 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.072 0.928 44 H 0.090 0.910 45 H 0.088 0.912 46 H 0.090 0.910 47 H 0.093 0.907 48 H 0.113 0.887 49 H 0.097 0.903 50 H 0.111 0.889 51 H 0.181 0.819 52 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 3.503 1.564 4.088 5.606 hybrid contribution -0.582 -0.323 0.121 0.676 sum 2.921 1.241 4.209 5.271 Atomic orbital electron populations 1.86534 1.17094 1.81937 1.50117 1.25108 0.85202 1.11091 0.97683 0.85397 0.80272 0.74169 0.80953 1.16602 1.17318 1.19341 1.20359 0.99689 0.94138 0.97502 1.21288 0.93970 0.93596 0.95703 1.19933 1.03398 0.93261 0.97319 1.18352 0.78572 0.86785 0.81761 1.90798 1.41895 1.67979 1.44358 1.46004 1.56809 1.11056 1.22181 1.21179 0.95453 0.79762 1.00574 1.21624 0.95188 0.96984 1.01681 1.26471 1.12111 1.04794 1.07230 0.78626 0.65905 0.64437 0.66464 1.26306 1.02979 1.00744 1.19530 1.21276 1.00079 0.93538 1.00040 1.21536 1.01220 0.98331 0.96198 1.21273 1.00042 0.99530 0.94139 1.26455 1.02788 1.18536 1.03097 1.26229 1.18287 0.98801 1.06096 1.21545 0.97717 0.95668 1.00272 1.21462 0.94441 0.92073 0.98498 1.21722 1.04120 0.95365 0.96669 1.96847 1.72309 1.73621 1.51718 1.21417 0.95314 1.00687 0.91996 0.76018 0.85300 0.84654 0.74821 0.91160 0.89536 0.94023 0.91763 0.90315 0.89674 0.90887 0.92236 0.90872 0.92092 0.92084 0.92768 0.90957 0.91150 0.90962 0.90677 0.88654 0.90339 0.88904 0.81939 0.83696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -0.04 12.83 -148.98 -1.91 -1.95 16 2 C -0.08 0.15 2.80 71.24 0.20 0.35 16 3 Si 0.97 -2.64 25.13 68.60 1.72 -0.91 16 4 H -0.24 0.86 7.04 99.48 0.70 1.56 16 5 H -0.25 0.51 7.11 99.48 0.71 1.22 16 6 H -0.27 -0.26 7.11 99.48 0.71 0.45 16 7 C -0.12 0.04 5.35 -19.90 -0.11 -0.07 16 8 C -0.03 -0.08 9.22 22.53 0.21 0.13 16 9 C -0.14 -0.26 5.87 -20.09 -0.12 -0.38 16 10 C 0.56 2.96 7.57 86.79 0.66 3.62 16 11 O -0.57 -7.93 16.00 -3.86 -0.06 -7.99 16 12 N -0.71 0.81 4.98 -446.78 -2.23 -1.41 16 13 C 0.13 -0.08 2.02 44.70 0.09 0.01 16 14 C -0.12 -0.02 5.20 30.79 0.16 0.14 16 15 C -0.42 0.18 4.97 72.33 0.36 0.53 16 16 Si 1.06 -5.37 9.18 68.60 0.63 -4.74 16 17 C -0.41 1.96 4.97 72.31 0.36 2.32 16 18 C -0.11 0.41 5.64 30.77 0.17 0.58 16 19 C -0.14 0.27 5.40 30.30 0.16 0.43 16 20 C -0.11 0.19 5.64 30.77 0.17 0.37 16 21 C -0.42 0.75 4.97 72.30 0.36 1.11 16 22 C -0.41 2.23 4.97 72.31 0.36 2.59 16 23 C -0.11 0.67 5.08 30.78 0.16 0.83 16 24 C -0.04 0.11 9.28 22.55 0.21 0.32 16 25 C -0.10 0.14 6.22 22.28 0.14 0.28 16 26 Br -0.03 0.05 33.69 -20.37 -0.69 -0.63 16 27 C -0.07 0.09 8.40 22.34 0.19 0.28 16 28 H 0.39 -2.62 8.70 -74.05 -0.64 -3.26 16 29 H 0.13 -0.41 7.96 -2.39 -0.02 -0.43 16 30 H 0.14 0.77 7.65 -2.91 -0.02 0.74 16 31 H 0.41 -3.16 6.63 -92.71 -0.61 -3.77 16 32 H 0.07 0.31 7.29 -2.39 -0.02 0.29 16 33 H 0.09 -0.36 7.71 -2.39 -0.02 -0.38 16 34 H 0.04 0.24 7.95 -2.39 -0.02 0.22 16 35 H 0.06 0.17 7.98 -2.39 -0.02 0.15 16 36 H 0.08 -0.06 7.98 -2.39 -0.02 -0.08 16 37 H 0.08 -0.57 7.98 -2.39 -0.02 -0.59 16 38 H 0.07 -0.27 7.98 -2.39 -0.02 -0.29 16 39 H 0.06 -0.17 8.14 -2.39 -0.02 -0.19 16 40 H 0.07 -0.41 7.72 -2.39 -0.02 -0.43 16 41 H 0.06 -0.08 7.89 -2.39 -0.02 -0.10 16 42 H 0.06 -0.12 8.14 -2.39 -0.02 -0.14 16 43 H 0.05 -0.02 8.14 -2.39 -0.02 -0.04 16 44 H 0.07 -0.26 7.72 -2.39 -0.02 -0.28 16 45 H 0.07 -0.06 7.98 -2.39 -0.02 -0.07 16 46 H 0.07 -0.10 7.98 -2.39 -0.02 -0.12 16 47 H 0.07 -0.29 7.98 -2.39 -0.02 -0.31 16 48 H 0.09 -0.70 7.98 -2.38 -0.02 -0.72 16 49 H 0.08 -0.51 8.13 -2.39 -0.02 -0.53 16 50 H 0.09 -0.90 7.71 -2.38 -0.02 -0.91 16 51 H 0.16 -1.34 6.40 -2.91 -0.02 -1.35 16 52 H 0.15 -0.51 4.84 -2.91 -0.01 -0.52 16 Total: 0.00 -15.72 419.21 1.62 -14.10 By element: Atomic # 1 Polarization: -10.32 SS G_CDS: 0.42 Total: -9.90 kcal Atomic # 6 Polarization: 9.71 SS G_CDS: 3.73 Total: 13.44 kcal Atomic # 7 Polarization: 0.81 SS G_CDS: -2.23 Total: -1.41 kcal Atomic # 8 Polarization: -7.96 SS G_CDS: -1.97 Total: -9.94 kcal Atomic # 14 Polarization: -8.01 SS G_CDS: 2.35 Total: -5.65 kcal Atomic # 35 Polarization: 0.05 SS G_CDS: -0.69 Total: -0.63 kcal Total: -15.72 1.62 -14.10 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_15739362_12335870.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.192 kcal (2) G-P(sol) polarization free energy of solvation -15.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds