Wall clock time and date at job start Thu Mar 4 2021 15:18:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35651 * 117.00043 * 2 1 4 4 C 1.38670 * 120.15159 * 359.72821 * 3 2 1 5 5 C 1.38103 * 120.08202 * 179.74374 * 4 3 2 6 6 C 1.38500 * 120.38997 * 0.50969 * 5 4 3 7 7 C 1.50698 * 119.84910 * 179.74547 * 6 5 4 8 8 O 1.42895 * 109.46942 * 245.02073 * 7 6 5 9 9 Si 1.86301 * 109.47176 * 5.02214 * 7 6 5 10 10 H 1.48495 * 109.47199 * 59.99713 * 9 7 6 11 11 H 1.48498 * 109.47184 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47016 * 299.99999 * 9 7 6 13 13 C 1.37828 * 120.30174 * 359.76318 * 6 5 4 14 14 C 1.39669 * 119.90745 * 359.97438 * 13 6 5 15 15 C 1.47535 * 120.19245 * 179.97438 * 14 13 6 16 16 O 1.21588 * 120.00252 * 180.02562 * 15 14 13 17 17 N 1.34784 * 119.99811 * 0.02562 * 15 14 13 18 18 C 1.46502 * 119.99691 * 180.02562 * 17 15 14 19 19 C 1.52553 * 108.99371 * 276.15680 * 18 17 15 20 20 C 1.54018 * 109.45644 * 162.04653 * 19 18 17 21 21 Si 1.86515 * 107.15921 * 58.32680 * 20 19 18 22 22 C 1.86508 * 110.14253 * 75.81427 * 21 20 19 23 23 C 1.53968 * 107.20919 * 164.96733 * 22 21 20 24 24 C 1.52546 * 109.46993 * 301.76058 * 23 22 21 25 25 C 1.52557 * 111.91285 * 77.26750 * 24 23 22 26 26 C 1.53950 * 109.49344 * 282.74670 * 25 24 23 27 27 C 1.86535 * 108.14106 * 315.42664 * 21 20 19 28 28 C 1.52564 * 108.99075 * 153.83577 * 18 17 15 29 29 H 1.09001 * 109.47103 * 300.00345 * 1 2 3 30 30 H 1.09004 * 109.47054 * 59.99849 * 1 2 3 31 31 H 1.09000 * 109.47187 * 179.97438 * 1 2 3 32 32 H 1.07997 * 119.95463 * 359.97438 * 4 3 2 33 33 H 1.07997 * 119.79907 * 180.23577 * 5 4 3 34 34 H 1.09001 * 109.46923 * 125.01968 * 7 6 5 35 35 H 0.96696 * 114.00314 * 60.00233 * 8 7 6 36 36 H 1.08000 * 120.04588 * 179.97438 * 13 6 5 37 37 H 0.96996 * 119.99973 * 0.02562 * 17 15 14 38 38 H 1.09000 * 108.97984 * 35.00078 * 18 17 15 39 39 H 1.08994 * 109.47291 * 282.12584 * 19 18 17 40 40 H 1.09001 * 109.46582 * 42.11770 * 19 18 17 41 41 H 1.09004 * 109.97240 * 298.89406 * 20 19 18 42 42 H 1.09000 * 109.96462 * 177.75256 * 20 19 18 43 43 H 1.09005 * 109.90575 * 284.38899 * 22 21 20 44 44 H 1.09003 * 109.91143 * 45.53430 * 22 21 20 45 45 H 1.08997 * 109.47473 * 181.76564 * 23 22 21 46 46 H 1.09000 * 109.47447 * 61.76427 * 23 22 21 47 47 H 1.08995 * 108.99291 * 316.64532 * 24 23 22 48 48 H 1.08999 * 108.93052 * 197.85205 * 24 23 22 49 49 H 1.09003 * 109.46880 * 162.73727 * 25 24 23 50 50 H 1.09000 * 109.46323 * 42.75758 * 25 24 23 51 51 H 1.08997 * 109.90659 * 298.77805 * 26 25 24 52 52 H 1.08995 * 109.90648 * 177.62922 * 26 25 24 53 53 H 1.09003 * 109.91177 * 285.12009 * 27 21 20 54 54 H 1.08998 * 109.97578 * 164.00506 * 27 21 20 55 55 H 1.08994 * 109.47082 * 317.90296 * 28 18 17 56 56 H 1.09008 * 109.46889 * 77.89671 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0449 1.2087 0.0000 4 6 1.2928 2.3736 -0.0057 5 6 1.9212 3.6034 -0.0003 6 6 3.3039 3.6836 0.0001 7 6 3.9769 5.0319 0.0002 8 8 4.6991 5.2038 -1.2208 9 14 2.6888 6.3691 0.1534 10 1 1.9383 6.1904 1.4222 11 1 3.3520 7.6977 0.1540 12 1 1.7492 6.2849 -0.9935 13 6 4.0671 2.5359 0.0001 14 6 3.4445 1.2856 0.0002 15 6 4.2554 0.0531 -0.0003 16 8 3.7098 -1.0335 -0.0007 17 7 5.6009 0.1316 -0.0004 18 6 6.4060 -1.0923 -0.0016 19 6 6.5498 -1.5934 1.4321 20 6 6.9845 -3.0709 1.4181 21 14 8.5945 -3.1619 0.4810 22 6 9.9921 -2.5310 1.5427 23 6 11.3069 -2.9797 0.8788 24 6 11.3218 -4.5001 0.7567 25 6 10.4508 -4.9872 -0.3972 26 6 8.9693 -4.9293 0.0174 27 6 8.4326 -2.1159 -1.0549 28 6 7.7605 -0.7950 -0.6376 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 0.2142 2.3191 -0.0105 33 1 1.3309 4.5078 -0.0009 34 1 4.6666 5.0937 0.8420 35 1 4.1472 5.1605 -2.0137 36 1 5.1450 2.6033 0.0000 37 1 6.0361 0.9984 0.0002 38 1 5.8954 -1.8520 -0.5934 39 1 7.3001 -0.9975 1.9517 40 1 5.5932 -1.5018 1.9466 41 1 6.2289 -3.6765 0.9175 42 1 7.1283 -3.4262 2.4385 43 1 9.9557 -1.4429 1.5960 44 1 9.9183 -2.9552 2.5441 45 1 12.1506 -2.6559 1.4882 46 1 11.3834 -2.5346 -0.1133 47 1 10.9542 -4.9343 1.6863 48 1 12.3470 -4.8316 0.5917 49 1 10.7185 -6.0141 -0.6462 50 1 10.6099 -4.3494 -1.2667 51 1 8.7978 -5.5818 0.8735 52 1 8.3382 -5.2361 -0.8166 53 1 7.8147 -2.6303 -1.7910 54 1 9.4184 -1.9145 -1.4740 55 1 7.6190 -0.1658 -1.5163 56 1 8.3940 -0.2766 0.0823 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_15739362_12496546.mol2 56 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 15:18:33 Heat of formation + Delta-G solvation = -128.804099 kcal Electronic energy + Delta-G solvation = -33219.359798 eV Core-core repulsion = 29023.391710 eV Total energy + Delta-G solvation = -4195.968088 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 377.198 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -41.81536 -40.37852 -39.20112 -37.80339 -37.28774 -37.08960 -34.21177 -32.38118 -32.02331 -31.85540 -31.79665 -28.60099 -27.56752 -26.63676 -26.14137 -24.82511 -23.56619 -23.24882 -22.61893 -21.47406 -21.28314 -21.01013 -19.50647 -18.36551 -18.21229 -17.43657 -16.89163 -16.78333 -16.38221 -16.21237 -16.04067 -15.98445 -15.85938 -15.71643 -15.14456 -15.09648 -15.05614 -14.81203 -14.66665 -14.55245 -13.79244 -13.71333 -13.63715 -13.45506 -13.34551 -13.23490 -13.12154 -13.08405 -12.75790 -12.52511 -12.44376 -12.27647 -12.20874 -12.14944 -12.11925 -12.02990 -11.93032 -11.86462 -11.59005 -11.54881 -11.40528 -10.97850 -10.35423 -10.35075 -10.20488 -10.15517 -10.07291 -9.96332 -9.30944 -0.28823 0.19958 1.21510 1.48363 1.55095 1.77786 1.87270 1.89533 1.95733 1.98369 2.13870 2.24843 2.67495 2.68129 3.49843 3.53353 3.67344 3.75436 3.78982 3.97176 4.05520 4.07635 4.11598 4.14735 4.21838 4.27124 4.31071 4.32641 4.36798 4.39963 4.50991 4.52820 4.62435 4.65766 4.66540 4.66836 4.71788 4.82493 4.84094 4.86341 4.92481 4.97957 5.05170 5.07089 5.15645 5.23086 5.25248 5.25306 5.28091 5.30482 5.40074 5.42707 5.44617 5.50694 5.53420 5.54857 5.56939 5.69478 6.27892 6.55984 6.75045 7.25387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.313 6.313 3 C 0.169 3.831 4 C -0.214 4.214 5 C -0.056 4.056 6 C -0.166 4.166 7 C -0.069 4.069 8 O -0.550 6.550 9 Si 0.974 3.026 10 H -0.257 1.257 11 H -0.276 1.276 12 H -0.250 1.250 13 C -0.012 4.012 14 C -0.196 4.196 15 C 0.555 3.445 16 O -0.564 6.564 17 N -0.714 5.714 18 C 0.137 3.863 19 C -0.115 4.115 20 C -0.423 4.423 21 Si 1.056 2.944 22 C -0.408 4.408 23 C -0.112 4.112 24 C -0.135 4.135 25 C -0.112 4.112 26 C -0.423 4.423 27 C -0.408 4.408 28 C -0.113 4.113 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.107 0.893 32 H 0.159 0.841 33 H 0.145 0.855 34 H 0.131 0.869 35 H 0.389 0.611 36 H 0.157 0.843 37 H 0.412 0.588 38 H 0.064 0.936 39 H 0.086 0.914 40 H 0.037 0.963 41 H 0.061 0.939 42 H 0.078 0.922 43 H 0.084 0.916 44 H 0.073 0.927 45 H 0.060 0.940 46 H 0.073 0.927 47 H 0.061 0.939 48 H 0.061 0.939 49 H 0.054 0.946 50 H 0.072 0.928 51 H 0.070 0.930 52 H 0.071 0.929 53 H 0.072 0.928 54 H 0.095 0.905 55 H 0.076 0.924 56 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.011 4.925 -0.355 5.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.224 6.224 3 C 0.121 3.879 4 C -0.232 4.232 5 C -0.074 4.074 6 C -0.167 4.167 7 C -0.180 4.180 8 O -0.357 6.357 9 Si 0.799 3.201 10 H -0.181 1.181 11 H -0.202 1.202 12 H -0.174 1.174 13 C -0.031 4.031 14 C -0.199 4.199 15 C 0.343 3.657 16 O -0.444 6.444 17 N -0.367 5.367 18 C 0.033 3.967 19 C -0.153 4.153 20 C -0.506 4.506 21 Si 1.246 2.754 22 C -0.494 4.494 23 C -0.149 4.149 24 C -0.173 4.173 25 C -0.150 4.150 26 C -0.508 4.508 27 C -0.494 4.494 28 C -0.151 4.151 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.126 0.874 32 H 0.176 0.824 33 H 0.163 0.837 34 H 0.149 0.851 35 H 0.238 0.762 36 H 0.175 0.825 37 H 0.250 0.750 38 H 0.082 0.918 39 H 0.104 0.896 40 H 0.055 0.945 41 H 0.080 0.920 42 H 0.096 0.904 43 H 0.103 0.897 44 H 0.092 0.908 45 H 0.079 0.921 46 H 0.091 0.909 47 H 0.079 0.921 48 H 0.080 0.920 49 H 0.073 0.927 50 H 0.090 0.910 51 H 0.089 0.911 52 H 0.090 0.910 53 H 0.091 0.909 54 H 0.114 0.886 55 H 0.094 0.906 56 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 0.556 4.625 0.126 4.660 hybrid contribution -0.713 -0.408 -0.233 0.854 sum -0.157 4.218 -0.107 4.222 Atomic orbital electron populations 1.23434 0.76656 1.05435 1.02734 1.86341 1.23086 1.26401 1.86611 1.19416 0.91468 0.85429 0.91635 1.21420 1.01608 0.91038 1.09143 1.21302 0.94311 0.97858 0.93949 1.20273 0.93456 0.96534 1.06434 1.24899 1.04365 0.97581 0.91140 1.86492 1.38566 1.95001 1.15656 0.85336 0.76759 0.76855 0.81138 1.18146 1.20166 1.17377 1.21163 1.00995 0.88871 0.92049 1.19489 0.91064 0.94260 1.15137 1.18310 0.82823 0.88568 0.75987 1.90806 1.72533 1.30332 1.50726 1.45972 1.05030 1.10678 1.75035 1.21094 0.92368 0.86469 0.96795 1.21606 1.01230 0.96610 0.95863 1.26498 1.17546 0.97300 1.09305 0.78624 0.64469 0.65908 0.66408 1.26284 1.09222 1.06133 1.07807 1.21276 0.97512 0.94832 1.01290 1.21533 1.00119 0.96562 0.99038 1.21272 0.94039 1.01339 0.98305 1.26433 0.99505 1.19832 1.04992 1.26240 1.04073 1.04510 1.14607 1.21529 0.93354 0.98704 1.01477 0.90991 0.90924 0.87421 0.82399 0.83746 0.85134 0.76189 0.82512 0.75048 0.91754 0.89566 0.94452 0.92025 0.90352 0.89684 0.90824 0.92138 0.90879 0.92069 0.91992 0.92690 0.90972 0.91097 0.91021 0.90865 0.88588 0.90553 0.88926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.00 9.81 113.37 1.11 1.12 16 2 O -0.31 -3.17 8.57 -68.75 -0.59 -3.76 16 3 C 0.17 1.16 6.70 22.84 0.15 1.31 16 4 C -0.21 -0.12 9.03 22.34 0.20 0.08 16 5 C -0.06 0.11 8.65 22.30 0.19 0.30 16 6 C -0.17 0.37 5.35 -19.90 -0.11 0.26 16 7 C -0.07 0.34 2.79 71.24 0.20 0.54 16 8 O -0.55 2.08 12.83 -148.98 -1.91 0.17 16 9 Si 0.97 -4.24 25.13 68.60 1.72 -2.51 16 10 H -0.26 0.78 7.11 99.48 0.71 1.49 16 11 H -0.28 0.05 7.11 99.48 0.71 0.76 16 12 H -0.25 1.16 7.04 99.48 0.70 1.86 16 13 C -0.01 0.00 9.16 22.52 0.21 0.21 16 14 C -0.20 -1.22 5.89 -20.01 -0.12 -1.34 16 15 C 0.55 5.64 7.56 86.69 0.66 6.30 16 16 O -0.56 -10.80 14.81 16.92 0.25 -10.55 16 17 N -0.71 -1.98 4.98 -447.09 -2.23 -4.21 16 18 C 0.14 0.37 2.02 44.70 0.09 0.46 16 19 C -0.11 -0.35 5.20 30.79 0.16 -0.19 16 20 C -0.42 -0.79 4.97 72.33 0.36 -0.43 16 21 Si 1.06 -3.59 9.18 68.60 0.63 -2.96 16 22 C -0.41 1.46 4.97 72.31 0.36 1.82 16 23 C -0.11 0.31 5.64 30.77 0.17 0.48 16 24 C -0.13 0.17 5.40 30.30 0.16 0.33 16 25 C -0.11 0.10 5.63 30.77 0.17 0.27 16 26 C -0.42 0.24 4.97 72.30 0.36 0.60 16 27 C -0.41 1.39 4.97 72.31 0.36 1.75 16 28 C -0.11 0.37 5.08 30.78 0.16 0.52 16 29 H 0.07 -0.22 7.67 -2.39 -0.02 -0.24 16 30 H 0.07 -0.24 7.65 -2.38 -0.02 -0.26 16 31 H 0.11 -0.12 8.14 -2.39 -0.02 -0.14 16 32 H 0.16 -0.66 6.30 -2.91 -0.02 -0.68 16 33 H 0.15 -0.85 4.83 -2.91 -0.01 -0.86 16 34 H 0.13 -0.95 7.96 -2.39 -0.02 -0.97 16 35 H 0.39 -3.68 8.70 -74.06 -0.64 -4.33 16 36 H 0.16 -0.86 6.40 -2.91 -0.02 -0.88 16 37 H 0.41 -1.57 6.62 -92.71 -0.61 -2.18 16 38 H 0.06 0.53 7.29 -2.39 -0.02 0.51 16 39 H 0.09 -0.13 7.71 -2.39 -0.02 -0.15 16 40 H 0.04 0.35 7.95 -2.39 -0.02 0.33 16 41 H 0.06 0.32 7.98 -2.38 -0.02 0.30 16 42 H 0.08 0.10 7.98 -2.39 -0.02 0.08 16 43 H 0.08 -0.46 7.98 -2.38 -0.02 -0.47 16 44 H 0.07 -0.20 7.98 -2.39 -0.02 -0.22 16 45 H 0.06 -0.14 8.14 -2.39 -0.02 -0.16 16 46 H 0.07 -0.34 7.72 -2.39 -0.02 -0.36 16 47 H 0.06 -0.04 7.89 -2.39 -0.02 -0.06 16 48 H 0.06 -0.09 8.14 -2.39 -0.02 -0.11 16 49 H 0.05 0.01 8.14 -2.39 -0.02 -0.01 16 50 H 0.07 -0.20 7.72 -2.39 -0.02 -0.21 16 51 H 0.07 0.02 7.98 -2.39 -0.02 0.00 16 52 H 0.07 -0.01 7.98 -2.39 -0.02 -0.02 16 53 H 0.07 -0.12 7.98 -2.39 -0.02 -0.14 16 54 H 0.10 -0.55 7.98 -2.39 -0.02 -0.57 16 55 H 0.08 -0.27 8.13 -2.39 -0.02 -0.29 16 56 H 0.09 -0.67 7.71 -2.38 -0.02 -0.69 16 Total: 0.00 -21.19 425.22 3.10 -18.09 By element: Atomic # 1 Polarization: -9.03 SS G_CDS: 0.37 Total: -8.66 kcal Atomic # 6 Polarization: 9.54 SS G_CDS: 4.85 Total: 14.39 kcal Atomic # 7 Polarization: -1.98 SS G_CDS: -2.23 Total: -4.21 kcal Atomic # 8 Polarization: -11.89 SS G_CDS: -2.25 Total: -14.14 kcal Atomic # 14 Polarization: -7.83 SS G_CDS: 2.35 Total: -5.48 kcal Total: -21.19 3.10 -18.09 kcal The number of atoms in the molecule is 56 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_15739362_12496546.mol2 56 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.711 kcal (2) G-P(sol) polarization free energy of solvation -21.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds