Wall clock time and date at job start Thu Mar 4 2021 15:34:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42904 * 1 3 3 Si 1.86294 * 109.47277 * 2 1 4 4 H 1.48502 * 109.47326 * 300.00343 * 3 2 1 5 5 H 1.48503 * 109.46881 * 59.99935 * 3 2 1 6 6 H 1.48501 * 109.47112 * 179.97438 * 3 2 1 7 7 C 1.50706 * 109.47178 * 240.00249 * 2 1 3 8 8 C 1.38059 * 119.80362 * 300.00072 * 7 2 1 9 9 C 1.38705 * 120.08520 * 179.97438 * 8 7 2 10 10 O 1.35654 * 120.15109 * 179.97438 * 9 8 7 11 11 C 1.40140 * 119.69928 * 0.02562 * 9 8 7 12 12 C 1.47531 * 120.19026 * 179.97438 * 11 9 8 13 13 O 1.21582 * 120.00232 * 0.02562 * 12 11 9 14 14 N 1.34779 * 119.99788 * 180.02562 * 12 11 9 15 15 C 1.46498 * 120.00045 * 180.02562 * 14 12 11 16 16 C 1.52549 * 108.99591 * 154.99932 * 15 14 12 17 17 C 1.53958 * 109.47387 * 197.90241 * 16 15 14 18 18 Si 1.86524 * 107.23393 * 301.80537 * 17 16 15 19 19 C 1.86513 * 110.14419 * 164.87496 * 18 17 16 20 20 C 1.53958 * 107.23145 * 164.86431 * 19 18 17 21 21 C 1.52547 * 109.48132 * 301.80958 * 20 19 18 22 22 C 1.52547 * 111.89928 * 77.27685 * 21 20 19 23 23 C 1.53958 * 109.47665 * 282.70922 * 22 21 20 24 24 C 1.86521 * 108.14513 * 44.47246 * 18 17 16 25 25 C 1.52555 * 108.99486 * 277.39436 * 15 14 12 26 26 C 1.39704 * 119.61469 * 0.27361 * 11 9 8 27 27 C 1.37788 * 119.90974 * 359.46636 * 26 11 9 28 28 H 0.96699 * 113.99632 * 59.99896 * 1 2 3 29 29 H 1.08997 * 109.46903 * 120.00597 * 2 1 3 30 30 H 1.08006 * 119.95314 * 0.02562 * 8 7 2 31 31 H 0.96694 * 114.00135 * 270.02668 * 10 9 8 32 32 H 0.97005 * 120.00007 * 0.02562 * 14 12 11 33 33 H 1.09002 * 108.97797 * 36.15501 * 15 14 12 34 34 H 1.09002 * 109.46975 * 317.90363 * 16 15 14 35 35 H 1.09001 * 109.47269 * 77.90330 * 16 15 14 36 36 H 1.09003 * 109.90398 * 61.23757 * 17 16 15 37 37 H 1.08998 * 109.90458 * 182.37185 * 17 16 15 38 38 H 1.09000 * 109.90192 * 284.29885 * 19 18 17 39 39 H 1.09005 * 109.90265 * 45.43651 * 19 18 17 40 40 H 1.08999 * 109.46985 * 181.80631 * 20 19 18 41 41 H 1.08997 * 109.46514 * 61.81262 * 20 19 18 42 42 H 1.09001 * 108.99449 * 316.65479 * 21 20 19 43 43 H 1.09001 * 108.93006 * 197.85701 * 21 20 19 44 44 H 1.09000 * 109.46808 * 162.70299 * 22 21 20 45 45 H 1.09007 * 109.46681 * 42.71055 * 22 21 20 46 46 H 1.09000 * 109.89892 * 298.78419 * 23 22 21 47 47 H 1.09004 * 109.90567 * 177.64027 * 23 22 21 48 48 H 1.08999 * 109.89810 * 196.09455 * 24 18 17 49 49 H 1.08998 * 109.96927 * 74.99096 * 24 18 17 50 50 H 1.09004 * 109.46794 * 282.08848 * 25 15 14 51 51 H 1.08999 * 109.46543 * 42.08530 * 25 15 14 52 52 H 1.08001 * 120.04763 * 179.70097 * 26 11 9 53 53 H 1.07997 * 119.85378 * 180.25158 * 27 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 1 1.5550 2.4565 -1.2125 5 1 1.5550 2.4564 1.2125 6 1 3.5351 1.7563 0.0006 7 6 1.9314 -0.7104 -1.2305 8 6 1.5954 -2.0322 -1.4450 9 6 2.0541 -2.6915 -2.5759 10 8 1.7252 -3.9904 -2.7877 11 6 2.8598 -2.0100 -3.4980 12 6 3.3541 -2.7009 -4.7042 13 8 3.0624 -3.8647 -4.9007 14 7 4.1291 -2.0419 -5.5883 15 6 4.6196 -2.7278 -6.7863 16 6 4.9036 -1.6924 -7.8700 17 6 4.9807 -2.3910 -9.2398 18 14 6.3271 -3.6772 -9.1290 19 6 6.1947 -4.8703 -10.5565 20 6 7.5220 -5.6473 -10.6262 21 6 8.6768 -4.6666 -10.8039 22 6 9.0347 -3.9660 -9.4969 23 6 8.0025 -2.8611 -9.2074 24 6 6.1306 -4.5861 -7.5122 25 6 5.8661 -3.5293 -6.4243 26 6 3.1973 -0.6745 -3.2653 27 6 2.7284 -0.0335 -2.1394 28 1 -0.3933 0.4417 -0.7651 29 1 1.7923 -0.5139 0.8899 30 1 0.9739 -2.5532 -0.7318 31 1 2.3512 -4.6217 -2.4076 32 1 4.3622 -1.1135 -5.4313 33 1 3.8501 -3.4126 -7.1427 34 1 4.1033 -0.9524 -7.8841 35 1 5.8521 -1.1979 -7.6605 36 1 4.0280 -2.8697 -9.4664 37 1 5.2250 -1.6638 -10.0140 38 1 5.3687 -5.5611 -10.3873 39 1 6.0366 -4.3218 -11.4851 40 1 7.4963 -6.3353 -11.4712 41 1 7.6621 -6.2102 -9.7034 42 1 8.3948 -3.9165 -11.5428 43 1 9.5497 -5.2100 -11.1658 44 1 10.0270 -3.5231 -9.5820 45 1 9.0290 -4.6910 -8.6828 46 1 8.0175 -2.1205 -10.0071 47 1 8.2276 -2.3835 -8.2537 48 1 7.0436 -5.1352 -7.2819 49 1 5.2885 -5.2754 -7.5726 50 1 6.7220 -2.8579 -6.3540 51 1 5.7135 -4.0251 -5.4657 52 1 3.8218 -0.1440 -3.9689 53 1 2.9865 1.0002 -1.9625 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_15739362_13422076.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 15:34:45 Heat of formation + Delta-G solvation = -137.864858 kcal Electronic energy + Delta-G solvation = -30795.471887 eV Core-core repulsion = 26754.648515 eV Total energy + Delta-G solvation = -4040.823373 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 363.182 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.70972 -40.21510 -38.56244 -37.69088 -37.30526 -37.14157 -34.25051 -32.42639 -32.03877 -31.85980 -31.13555 -28.01682 -27.26478 -26.13844 -23.92347 -23.62912 -23.41081 -23.18137 -21.55747 -21.46571 -21.02718 -19.44231 -18.68409 -18.31252 -17.51898 -16.68749 -16.48515 -16.31418 -16.22323 -16.16550 -16.00883 -15.79697 -15.34294 -15.12908 -15.10263 -15.02040 -14.81238 -14.52203 -13.90977 -13.81123 -13.61687 -13.39273 -13.28912 -13.25622 -13.10899 -12.88411 -12.79151 -12.56365 -12.35889 -12.28191 -12.17523 -12.14115 -12.04007 -11.94105 -11.83083 -11.58064 -11.54270 -11.43988 -10.92890 -10.50839 -10.33751 -10.17857 -10.10259 -10.08640 -9.97543 -9.77367 -0.42099 0.12870 1.16587 1.50803 1.54260 1.72323 1.86287 1.88213 1.95574 1.97977 2.09314 2.56253 2.67456 3.12416 3.44379 3.55068 3.66397 3.73640 3.82356 4.02469 4.03214 4.08025 4.12982 4.19810 4.26941 4.30315 4.35912 4.45905 4.49026 4.52564 4.63565 4.64410 4.65151 4.75804 4.81412 4.82390 4.85843 4.95239 5.00082 5.04002 5.12475 5.15243 5.22035 5.22458 5.22895 5.27002 5.28247 5.38001 5.39389 5.43808 5.49533 5.51510 5.54156 5.58574 5.67491 6.49804 6.66866 6.70169 7.18953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.553 6.553 2 C -0.091 4.091 3 Si 0.988 3.012 4 H -0.245 1.245 5 H -0.279 1.279 6 H -0.246 1.246 7 C -0.073 4.073 8 C -0.135 4.135 9 C 0.152 3.848 10 O -0.498 6.498 11 C -0.181 4.181 12 C 0.553 3.447 13 O -0.563 6.563 14 N -0.712 5.712 15 C 0.136 3.864 16 C -0.114 4.114 17 C -0.411 4.411 18 Si 1.055 2.945 19 C -0.423 4.423 20 C -0.114 4.114 21 C -0.133 4.133 22 C -0.114 4.114 23 C -0.406 4.406 24 C -0.419 4.419 25 C -0.113 4.113 26 C -0.054 4.054 27 C -0.144 4.144 28 H 0.390 0.610 29 H 0.128 0.872 30 H 0.140 0.860 31 H 0.407 0.593 32 H 0.413 0.587 33 H 0.063 0.937 34 H 0.076 0.924 35 H 0.094 0.906 36 H 0.071 0.929 37 H 0.095 0.905 38 H 0.068 0.932 39 H 0.078 0.922 40 H 0.055 0.945 41 H 0.063 0.937 42 H 0.067 0.933 43 H 0.059 0.941 44 H 0.061 0.939 45 H 0.063 0.937 46 H 0.082 0.918 47 H 0.082 0.918 48 H 0.078 0.922 49 H 0.061 0.939 50 H 0.086 0.914 51 H 0.040 0.960 52 H 0.166 0.834 53 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.593 6.710 -0.532 8.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.360 6.360 2 C -0.200 4.200 3 Si 0.811 3.189 4 H -0.168 1.168 5 H -0.205 1.205 6 H -0.170 1.170 7 C -0.074 4.074 8 C -0.154 4.154 9 C 0.106 3.894 10 O -0.311 6.311 11 C -0.185 4.185 12 C 0.341 3.659 13 O -0.442 6.442 14 N -0.365 5.365 15 C 0.032 3.968 16 C -0.152 4.152 17 C -0.498 4.498 18 Si 1.245 2.755 19 C -0.508 4.508 20 C -0.152 4.152 21 C -0.171 4.171 22 C -0.151 4.151 23 C -0.493 4.493 24 C -0.503 4.503 25 C -0.152 4.152 26 C -0.073 4.073 27 C -0.162 4.162 28 H 0.240 0.760 29 H 0.146 0.854 30 H 0.158 0.842 31 H 0.266 0.734 32 H 0.251 0.749 33 H 0.082 0.918 34 H 0.095 0.905 35 H 0.113 0.887 36 H 0.090 0.910 37 H 0.114 0.886 38 H 0.087 0.913 39 H 0.097 0.903 40 H 0.073 0.927 41 H 0.081 0.919 42 H 0.086 0.914 43 H 0.078 0.922 44 H 0.080 0.920 45 H 0.082 0.918 46 H 0.101 0.899 47 H 0.101 0.899 48 H 0.097 0.903 49 H 0.080 0.920 50 H 0.104 0.896 51 H 0.059 0.941 52 H 0.184 0.816 53 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 4.306 6.610 -0.431 7.901 hybrid contribution -0.069 -0.806 -0.065 0.811 sum 4.237 5.804 -0.495 7.203 Atomic orbital electron populations 1.86514 1.17363 1.82010 1.50127 1.25283 0.85075 1.11691 0.97944 0.85135 0.80118 0.73349 0.80316 1.16806 1.20496 1.16977 1.20601 0.96175 0.93753 0.96821 1.21346 1.01709 0.95409 0.96907 1.18791 0.92818 0.85687 0.92137 1.84715 1.52503 1.13392 1.80455 1.20481 1.03764 0.96801 0.97459 1.18344 0.78162 0.86069 0.83329 1.90804 1.58747 1.17987 1.76706 1.45979 1.51244 1.16272 1.22965 1.21111 0.96179 0.94893 0.84646 1.21529 1.04005 0.97019 0.92603 1.26248 1.13024 1.11842 0.98636 0.78623 0.66596 0.65806 0.64435 1.26453 0.99159 1.10349 1.14844 1.21279 0.94202 0.97894 1.01819 1.21517 0.98237 0.98820 0.98494 1.21281 0.99149 0.97640 0.97079 1.26272 1.14549 1.03508 1.04941 1.26458 1.04105 1.04567 1.15207 1.21588 0.97521 0.97638 0.98436 1.21460 0.96950 0.91599 0.97274 1.21248 0.99274 1.01108 0.94565 0.76048 0.85389 0.84236 0.73370 0.74860 0.91845 0.90505 0.88732 0.90972 0.88599 0.91348 0.90316 0.92664 0.91869 0.91382 0.92196 0.92038 0.91841 0.89891 0.89890 0.90341 0.92032 0.89553 0.94102 0.81644 0.83120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 0.58 12.76 -148.98 -1.90 -1.32 16 2 C -0.09 0.33 2.81 71.24 0.20 0.53 16 3 Si 0.99 -5.10 25.05 68.60 1.72 -3.38 16 4 H -0.24 1.44 7.11 99.48 0.71 2.15 16 5 H -0.28 0.13 7.11 99.48 0.71 0.84 16 6 H -0.25 1.35 7.11 99.48 0.71 2.06 16 7 C -0.07 0.12 5.39 -19.83 -0.11 0.02 16 8 C -0.14 -0.30 9.53 22.34 0.21 -0.08 16 9 C 0.15 0.87 6.72 22.84 0.15 1.03 16 10 O -0.50 -4.36 11.58 -68.77 -0.80 -5.16 16 11 C -0.18 -0.63 5.89 -20.01 -0.12 -0.75 16 12 C 0.55 3.83 7.51 86.69 0.65 4.48 16 13 O -0.56 -8.77 14.81 16.94 0.25 -8.52 16 14 N -0.71 0.23 4.99 -447.13 -2.23 -2.00 16 15 C 0.14 0.04 2.00 44.69 0.09 0.13 16 16 C -0.11 0.60 5.07 30.77 0.16 0.75 16 17 C -0.41 1.96 4.97 72.31 0.36 2.32 16 18 Si 1.06 -5.04 9.19 68.60 0.63 -4.41 16 19 C -0.42 0.63 4.97 72.31 0.36 0.99 16 20 C -0.11 0.05 5.64 30.77 0.17 0.22 16 21 C -0.13 0.21 5.40 30.29 0.16 0.37 16 22 C -0.11 0.30 5.64 30.77 0.17 0.47 16 23 C -0.41 2.04 4.97 72.31 0.36 2.40 16 24 C -0.42 0.01 4.96 72.30 0.36 0.36 16 25 C -0.11 -0.06 5.20 30.77 0.16 0.10 16 26 C -0.05 0.20 9.53 22.52 0.21 0.41 16 27 C -0.14 0.60 8.64 22.24 0.19 0.80 16 28 H 0.39 -2.88 8.70 -74.06 -0.64 -3.52 16 29 H 0.13 -0.66 7.96 -2.39 -0.02 -0.68 16 30 H 0.14 0.27 8.06 -2.91 -0.02 0.25 16 31 H 0.41 0.75 9.06 -74.06 -0.67 0.08 16 32 H 0.41 -3.12 6.61 -92.70 -0.61 -3.73 16 33 H 0.06 0.39 7.32 -2.39 -0.02 0.37 16 34 H 0.08 -0.44 8.13 -2.39 -0.02 -0.46 16 35 H 0.09 -0.89 7.72 -2.39 -0.02 -0.91 16 36 H 0.07 -0.20 7.98 -2.39 -0.02 -0.21 16 37 H 0.10 -0.67 7.98 -2.39 -0.02 -0.69 16 38 H 0.07 -0.02 7.98 -2.39 -0.02 -0.04 16 39 H 0.08 -0.17 7.98 -2.38 -0.02 -0.19 16 40 H 0.05 0.03 8.14 -2.39 -0.02 0.01 16 41 H 0.06 -0.05 7.72 -2.39 -0.02 -0.06 16 42 H 0.07 -0.15 7.89 -2.39 -0.02 -0.17 16 43 H 0.06 -0.08 8.14 -2.39 -0.02 -0.10 16 44 H 0.06 -0.15 8.14 -2.39 -0.02 -0.17 16 45 H 0.06 -0.18 7.72 -2.38 -0.02 -0.19 16 46 H 0.08 -0.48 7.98 -2.39 -0.02 -0.50 16 47 H 0.08 -0.53 7.98 -2.39 -0.02 -0.55 16 48 H 0.08 -0.03 7.98 -2.39 -0.02 -0.05 16 49 H 0.06 0.21 7.98 -2.39 -0.02 0.19 16 50 H 0.09 -0.35 7.72 -2.39 -0.02 -0.37 16 51 H 0.04 0.25 7.89 -2.39 -0.02 0.23 16 52 H 0.17 -1.84 6.40 -2.91 -0.02 -1.85 16 53 H 0.15 -1.31 4.85 -2.91 -0.01 -1.32 16 Total: 0.00 -21.02 406.57 1.18 -19.84 By element: Atomic # 1 Polarization: -9.36 SS G_CDS: -0.24 Total: -9.60 kcal Atomic # 6 Polarization: 10.80 SS G_CDS: 3.75 Total: 14.56 kcal Atomic # 7 Polarization: 0.23 SS G_CDS: -2.23 Total: -2.00 kcal Atomic # 8 Polarization: -12.55 SS G_CDS: -2.45 Total: -15.00 kcal Atomic # 14 Polarization: -10.14 SS G_CDS: 2.35 Total: -7.80 kcal Total: -21.02 1.18 -19.84 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_15739362_13422076.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.030 kcal (2) G-P(sol) polarization free energy of solvation -21.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds