Wall clock time and date at job start Thu Mar 4 2021 15:46:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.37875 * 126.45826 * 2 1 4 4 C 1.46677 * 126.23003 * 359.95681 * 3 2 1 5 5 O 1.21693 * 120.00412 * 359.72103 * 4 3 2 6 6 N 1.34777 * 120.00052 * 179.71554 * 4 3 2 7 7 C 1.46499 * 120.00358 * 180.02562 * 6 4 3 8 8 C 1.52557 * 108.99639 * 155.00302 * 7 6 4 9 9 C 1.53958 * 109.47748 * 197.90188 * 8 7 6 10 10 Si 1.86522 * 107.23915 * 301.79524 * 9 8 7 11 11 C 1.86517 * 110.14300 * 164.85587 * 10 9 8 12 12 C 1.53960 * 107.24215 * 75.96311 * 11 10 9 13 13 C 1.52541 * 109.48681 * 58.17967 * 12 11 10 14 14 C 1.52545 * 111.83720 * 282.77125 * 13 12 11 15 15 C 1.53834 * 109.54514 * 77.34379 * 14 13 12 16 16 C 1.86525 * 108.14192 * 44.45676 * 10 9 8 17 17 C 1.52550 * 108.99445 * 277.39138 * 7 6 4 18 18 N 1.37650 * 107.53657 * 179.69827 * 3 2 1 19 19 C 1.35540 * 108.64179 * 0.26022 * 18 3 2 20 20 C 1.50704 * 125.56351 * 179.97438 * 19 18 3 21 21 O 1.42905 * 109.46833 * 299.99949 * 20 19 18 22 22 Si 1.86300 * 109.46917 * 180.02562 * 20 19 18 23 23 H 1.48500 * 109.46681 * 299.99728 * 22 20 19 24 24 H 1.48501 * 109.47382 * 59.99851 * 22 20 19 25 25 H 1.48499 * 109.46702 * 179.97438 * 22 20 19 26 26 C 1.35453 * 108.86819 * 0.02562 * 19 18 3 27 27 H 1.09003 * 109.46846 * 90.00430 * 1 2 3 28 28 H 1.08996 * 109.47271 * 209.99790 * 1 2 3 29 29 H 1.08997 * 109.47314 * 330.00867 * 1 2 3 30 30 H 0.97005 * 119.99617 * 0.02562 * 6 4 3 31 31 H 1.09003 * 108.97781 * 36.15507 * 7 6 4 32 32 H 1.08998 * 109.46948 * 77.89666 * 8 7 6 33 33 H 1.08997 * 109.46803 * 317.90309 * 8 7 6 34 34 H 1.08992 * 109.90288 * 182.35979 * 9 8 7 35 35 H 1.09008 * 109.96638 * 61.26435 * 9 8 7 36 36 H 1.09000 * 109.89913 * 316.52719 * 11 10 9 37 37 H 1.08999 * 109.96257 * 195.43092 * 11 10 9 38 38 H 1.08998 * 109.46268 * 298.17335 * 12 11 10 39 39 H 1.09000 * 109.45889 * 178.18350 * 12 11 10 40 40 H 1.09002 * 108.99690 * 43.35594 * 13 12 11 41 41 H 1.09001 * 108.99502 * 162.18937 * 13 12 11 42 42 H 1.09000 * 109.47160 * 197.24690 * 14 13 12 43 43 H 1.09006 * 109.47007 * 317.24603 * 14 13 12 44 44 H 1.09005 * 109.91567 * 182.30568 * 15 14 13 45 45 H 1.08993 * 109.94032 * 61.13907 * 15 14 13 46 46 H 1.08999 * 109.89669 * 74.99048 * 16 10 9 47 47 H 1.08999 * 109.89832 * 196.11960 * 16 10 9 48 48 H 1.09001 * 109.47104 * 282.11395 * 17 7 6 49 49 H 1.08998 * 109.47218 * 42.10547 * 17 7 6 50 50 H 0.97000 * 125.67876 * 180.23798 * 18 3 2 51 51 H 1.08992 * 109.46768 * 59.99771 * 20 19 18 52 52 H 0.96697 * 113.99224 * 179.97438 * 21 20 19 53 53 H 1.08008 * 126.06289 * 180.02562 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3263 1.1089 0.0000 4 6 1.8898 2.5092 -0.0009 5 8 0.7026 2.7766 -0.0069 6 7 2.8036 3.4999 0.0050 7 6 2.3677 4.8986 0.0047 8 6 3.4651 5.7608 0.6209 9 6 2.8757 7.1202 1.0393 10 14 2.1470 7.9009 -0.4899 11 6 1.0222 9.3117 -0.0171 12 6 1.9200 10.4985 0.3777 13 6 2.8308 10.8586 -0.7917 14 6 3.9965 9.8836 -0.9242 15 6 3.5049 8.5789 -1.5741 16 6 1.1851 6.5928 -1.4078 17 6 2.0500 5.3193 -1.4268 18 7 3.6284 0.6626 0.0069 19 6 3.6218 -0.6928 0.0053 20 6 4.8434 -1.5753 0.0107 21 8 5.6301 -1.3067 -1.1517 22 14 4.3183 -3.3627 0.0050 23 1 3.5005 -3.6421 1.2127 24 1 3.5137 -3.6385 -1.2123 25 1 5.5221 -4.2322 0.0097 26 6 2.3379 -1.1246 -0.0031 27 1 -0.3633 -0.0001 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3634 0.8900 0.5137 30 1 3.7499 3.2868 0.0095 31 1 1.4646 4.9886 0.6084 32 1 4.2575 5.9181 -0.1108 33 1 3.8741 5.2571 1.4967 34 1 3.6626 7.7576 1.4423 35 1 2.0972 6.9738 1.7881 36 1 0.3980 9.0213 0.8280 37 1 0.3944 9.5872 -0.8645 38 1 2.5273 10.2233 1.2400 39 1 1.2972 11.3565 0.6308 40 1 2.2485 10.8427 -1.7130 41 1 3.2244 11.8635 -0.6385 42 1 4.7725 10.3277 -1.5477 43 1 4.4035 9.6675 0.0637 44 1 4.3241 7.8624 -1.6345 45 1 3.1159 8.7840 -2.5714 46 1 0.2444 6.3949 -0.8939 47 1 0.9892 6.9235 -2.4278 48 1 2.9787 5.5189 -1.9615 49 1 1.5068 4.5187 -1.9288 50 1 4.4190 1.2245 0.0118 51 1 5.4341 -1.3725 0.9040 52 1 6.4344 -1.8399 -1.2140 53 1 2.0136 -2.1549 -0.0059 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_15739362_13940406.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 15:46:19 Heat of formation + Delta-G solvation = -87.283479 kcal Electronic energy + Delta-G solvation = -29340.503391 eV Core-core repulsion = 25527.818194 eV Total energy + Delta-G solvation = -3812.685197 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 350.194 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.61344 -40.59457 -37.96902 -37.61577 -37.31188 -34.37242 -33.40384 -32.06250 -31.88251 -31.68018 -28.30302 -27.82780 -27.08419 -25.78210 -23.63426 -23.26885 -22.46944 -21.73983 -21.39257 -21.02780 -20.33727 -19.37395 -18.51013 -17.34450 -16.90251 -16.50228 -16.30353 -16.10604 -16.00705 -15.34661 -15.24480 -15.14556 -15.05487 -14.92925 -14.62139 -14.54087 -14.15720 -13.73513 -13.70618 -13.63956 -13.39407 -13.34854 -13.25335 -13.14745 -13.05910 -12.78392 -12.57471 -12.51767 -12.30114 -12.17433 -12.01885 -11.94733 -11.92067 -11.90457 -11.56962 -11.44229 -11.08967 -10.48075 -10.38292 -10.19171 -10.09285 -10.08457 -9.86251 -9.19311 0.28306 1.08871 1.46028 1.51805 1.62680 1.85628 1.86181 1.94698 1.96148 2.03462 2.18136 2.24459 2.66060 3.31376 3.68900 3.81987 3.84890 4.02327 4.04252 4.07987 4.12907 4.16936 4.18091 4.30693 4.33716 4.43325 4.49363 4.49814 4.60136 4.64189 4.65372 4.74531 4.79081 4.81860 4.83416 4.85110 4.96206 5.03458 5.10239 5.12738 5.18608 5.23232 5.23691 5.26011 5.28509 5.35998 5.41222 5.42758 5.47392 5.49624 5.53032 5.60804 5.67460 5.80194 6.31496 6.49257 6.75757 7.08487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.088 4.088 3 C -0.070 4.070 4 C 0.587 3.413 5 O -0.561 6.561 6 N -0.716 5.716 7 C 0.137 3.863 8 C -0.113 4.113 9 C -0.407 4.407 10 Si 1.057 2.943 11 C -0.423 4.423 12 C -0.112 4.112 13 C -0.135 4.135 14 C -0.112 4.112 15 C -0.410 4.410 16 C -0.422 4.422 17 C -0.116 4.116 18 N -0.509 5.509 19 C 0.074 3.926 20 C -0.062 4.062 21 O -0.564 6.564 22 Si 1.000 3.000 23 H -0.259 1.259 24 H -0.275 1.275 25 H -0.246 1.246 26 C -0.225 4.225 27 H 0.065 0.935 28 H 0.078 0.922 29 H 0.064 0.936 30 H 0.408 0.592 31 H 0.070 0.930 32 H 0.091 0.909 33 H 0.077 0.923 34 H 0.096 0.904 35 H 0.075 0.925 36 H 0.072 0.928 37 H 0.070 0.930 38 H 0.072 0.928 39 H 0.054 0.946 40 H 0.060 0.940 41 H 0.061 0.939 42 H 0.059 0.941 43 H 0.073 0.927 44 H 0.083 0.917 45 H 0.072 0.928 46 H 0.064 0.936 47 H 0.077 0.923 48 H 0.083 0.917 49 H 0.039 0.961 50 H 0.430 0.570 51 H 0.109 0.891 52 H 0.405 0.595 53 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.038 -0.279 1.785 8.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.097 4.097 3 C -0.183 4.183 4 C 0.376 3.624 5 O -0.440 6.440 6 N -0.367 5.367 7 C 0.033 3.967 8 C -0.150 4.150 9 C -0.494 4.494 10 Si 1.247 2.753 11 C -0.508 4.508 12 C -0.150 4.150 13 C -0.173 4.173 14 C -0.149 4.149 15 C -0.496 4.496 16 C -0.506 4.506 17 C -0.154 4.154 18 N -0.107 5.107 19 C -0.045 4.045 20 C -0.172 4.172 21 O -0.374 6.374 22 Si 0.822 3.178 23 H -0.183 1.183 24 H -0.200 1.200 25 H -0.170 1.170 26 C -0.249 4.249 27 H 0.084 0.916 28 H 0.097 0.903 29 H 0.083 0.917 30 H 0.244 0.756 31 H 0.089 0.911 32 H 0.109 0.891 33 H 0.096 0.904 34 H 0.114 0.886 35 H 0.094 0.906 36 H 0.091 0.909 37 H 0.089 0.911 38 H 0.091 0.909 39 H 0.073 0.927 40 H 0.079 0.921 41 H 0.080 0.920 42 H 0.077 0.923 43 H 0.092 0.908 44 H 0.102 0.898 45 H 0.091 0.909 46 H 0.083 0.917 47 H 0.096 0.904 48 H 0.101 0.899 49 H 0.057 0.943 50 H 0.270 0.730 51 H 0.126 0.874 52 H 0.257 0.743 53 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 6.593 -0.363 1.667 6.810 hybrid contribution 0.740 0.212 -0.154 0.785 sum 7.332 -0.151 1.512 7.488 Atomic orbital electron populations 1.20326 0.89154 1.02927 1.02227 1.20130 0.96364 0.91247 1.01921 1.20153 0.84447 0.93217 1.20496 1.17168 0.85745 0.83610 0.75916 1.90810 1.17567 1.83721 1.51864 1.45942 1.09607 1.06060 1.75106 1.21143 0.99141 0.79397 0.96986 1.21520 0.96852 0.95108 1.01552 1.26218 1.07066 1.01574 1.14510 0.78609 0.66080 0.64225 0.66404 1.26444 1.07823 1.11383 1.05140 1.21273 0.97611 0.97873 0.98212 1.21532 0.97144 0.99623 0.98974 1.21250 0.97339 0.95004 1.01307 1.26283 1.12819 1.02381 1.08125 1.26487 1.06285 1.08713 1.09142 1.21601 1.00491 0.97480 0.95864 1.41739 1.06865 1.06554 1.55521 1.20239 0.95601 0.83104 1.05542 1.24533 0.91816 1.08612 0.92254 1.86439 1.40578 1.67836 1.42549 0.84946 0.80378 0.72264 0.80215 1.18279 1.19985 1.16995 1.20744 0.91425 0.99362 1.13352 0.91630 0.90343 0.91721 0.75625 0.91150 0.89092 0.90445 0.88581 0.90583 0.90894 0.91125 0.90927 0.92692 0.92103 0.92003 0.92252 0.90838 0.89806 0.90914 0.91699 0.90401 0.89863 0.94262 0.72957 0.87368 0.74340 0.82940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.73 9.83 71.24 0.70 -0.03 16 2 C -0.09 -0.76 6.21 -19.57 -0.12 -0.89 16 3 C -0.07 -0.48 7.06 40.35 0.28 -0.20 16 4 C 0.59 5.00 7.53 86.45 0.65 5.65 16 5 O -0.56 -8.96 14.46 -4.33 -0.06 -9.03 16 6 N -0.72 -0.70 5.04 -447.91 -2.26 -2.96 16 7 C 0.14 0.12 2.00 44.70 0.09 0.21 16 8 C -0.11 0.56 5.07 30.77 0.16 0.71 16 9 C -0.41 1.98 4.97 72.31 0.36 2.34 16 10 Si 1.06 -4.66 9.19 68.60 0.63 -4.03 16 11 C -0.42 0.60 4.97 72.31 0.36 0.96 16 12 C -0.11 0.17 5.63 30.77 0.17 0.34 16 13 C -0.14 0.23 5.40 30.29 0.16 0.40 16 14 C -0.11 0.36 5.62 30.72 0.17 0.53 16 15 C -0.41 1.68 4.97 72.26 0.36 2.04 16 16 C -0.42 -0.31 4.97 72.30 0.36 0.05 16 17 C -0.12 -0.22 5.20 30.77 0.16 -0.06 16 18 N -0.51 -0.36 5.99 -171.92 -1.03 -1.39 16 19 C 0.07 0.13 6.51 41.34 0.27 0.40 16 20 C -0.06 0.29 3.07 71.24 0.22 0.51 16 21 O -0.56 2.56 12.85 -148.98 -1.92 0.65 16 22 Si 1.00 -3.59 25.82 68.60 1.77 -1.82 16 23 H -0.26 0.39 7.11 99.48 0.71 1.10 16 24 H -0.28 -0.43 7.11 99.48 0.71 0.28 16 25 H -0.25 1.22 7.11 99.48 0.71 1.93 16 26 C -0.22 -1.18 9.27 22.01 0.20 -0.98 16 27 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 28 H 0.08 0.35 8.14 -2.39 -0.02 0.33 16 29 H 0.06 0.76 6.49 -2.39 -0.02 0.74 16 30 H 0.41 -2.30 7.71 -92.70 -0.71 -3.01 16 31 H 0.07 0.40 7.33 -2.39 -0.02 0.38 16 32 H 0.09 -0.78 7.72 -2.39 -0.02 -0.79 16 33 H 0.08 -0.44 8.13 -2.39 -0.02 -0.46 16 34 H 0.10 -0.67 7.98 -2.39 -0.02 -0.69 16 35 H 0.08 -0.26 7.98 -2.38 -0.02 -0.28 16 36 H 0.07 -0.08 7.98 -2.39 -0.02 -0.10 16 37 H 0.07 -0.03 7.98 -2.39 -0.02 -0.05 16 38 H 0.07 -0.25 7.72 -2.39 -0.02 -0.27 16 39 H 0.05 -0.02 8.14 -2.39 -0.02 -0.04 16 40 H 0.06 -0.06 7.89 -2.39 -0.02 -0.08 16 41 H 0.06 -0.11 8.14 -2.39 -0.02 -0.13 16 42 H 0.06 -0.15 8.14 -2.39 -0.02 -0.17 16 43 H 0.07 -0.39 7.71 -2.38 -0.02 -0.41 16 44 H 0.08 -0.49 7.98 -2.38 -0.02 -0.51 16 45 H 0.07 -0.22 7.98 -2.39 -0.02 -0.24 16 46 H 0.06 0.23 7.98 -2.39 -0.02 0.21 16 47 H 0.08 0.04 7.98 -2.39 -0.02 0.02 16 48 H 0.08 -0.18 7.72 -2.39 -0.02 -0.20 16 49 H 0.04 0.32 7.89 -2.39 -0.02 0.30 16 50 H 0.43 -2.48 8.19 -92.71 -0.76 -3.24 16 51 H 0.11 -1.10 7.96 -2.39 -0.02 -1.12 16 52 H 0.40 -5.55 8.74 -74.06 -0.65 -6.20 16 53 H 0.15 0.38 6.17 -2.91 -0.02 0.36 16 Total: 0.00 -19.65 404.88 1.24 -18.40 By element: Atomic # 1 Polarization: -11.36 SS G_CDS: -0.45 Total: -11.81 kcal Atomic # 6 Polarization: 7.42 SS G_CDS: 4.56 Total: 11.98 kcal Atomic # 7 Polarization: -1.06 SS G_CDS: -3.29 Total: -4.35 kcal Atomic # 8 Polarization: -6.40 SS G_CDS: -1.98 Total: -8.38 kcal Atomic # 14 Polarization: -8.25 SS G_CDS: 2.40 Total: -5.84 kcal Total: -19.65 1.24 -18.40 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_15739362_13940406.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.881 kcal (2) G-P(sol) polarization free energy of solvation -19.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds