Wall clock time and date at job start Thu Mar 4 2021 16:17:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.36773 * 125.80140 * 2 1 4 4 C 1.47262 * 126.94100 * 359.97438 * 3 2 1 5 5 O 1.21627 * 119.99930 * 359.71098 * 4 3 2 6 6 N 1.34771 * 120.00008 * 179.71417 * 4 3 2 7 7 C 1.46508 * 119.99908 * 179.97438 * 6 4 3 8 8 C 1.52553 * 108.99756 * 204.99795 * 7 6 4 9 9 C 1.53953 * 109.47747 * 162.15395 * 8 7 6 10 10 Si 1.86523 * 107.23141 * 58.19943 * 9 8 7 11 11 C 1.86520 * 110.13750 * 75.97382 * 10 9 8 12 12 C 1.53953 * 107.24166 * 75.97425 * 11 10 9 13 13 C 1.52558 * 109.47177 * 58.20109 * 12 11 10 14 14 C 1.52549 * 111.81883 * 282.73128 * 13 12 11 15 15 C 1.53834 * 109.54132 * 77.36151 * 14 13 12 16 16 C 1.86519 * 108.15243 * 315.56289 * 10 9 8 17 17 C 1.52554 * 108.93291 * 82.66188 * 7 6 4 18 18 C 1.46686 * 106.11634 * 179.71307 * 3 2 1 19 19 C 1.34490 * 106.33257 * 0.26235 * 18 3 2 20 20 C 1.50691 * 125.57059 * 180.02562 * 19 18 3 21 21 O 1.42899 * 109.47397 * 300.00031 * 20 19 18 22 22 Si 1.86304 * 109.47171 * 179.97438 * 20 19 18 23 23 H 1.48506 * 109.46830 * 60.00221 * 22 20 19 24 24 H 1.48498 * 109.47135 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47132 * 300.00565 * 22 20 19 26 26 N 1.34665 * 125.80447 * 180.16144 * 2 1 3 27 27 H 1.08997 * 109.46354 * 90.00363 * 1 2 3 28 28 H 1.09001 * 109.46743 * 210.00083 * 1 2 3 29 29 H 1.08994 * 109.47163 * 330.00189 * 1 2 3 30 30 H 0.96995 * 120.00226 * 359.97438 * 6 4 3 31 31 H 1.08998 * 108.97951 * 323.84663 * 7 6 4 32 32 H 1.09004 * 109.46937 * 42.15232 * 8 7 6 33 33 H 1.09002 * 109.46806 * 282.15907 * 8 7 6 34 34 H 1.09005 * 109.90200 * 298.76972 * 9 8 7 35 35 H 1.08998 * 109.97024 * 177.66571 * 9 8 7 36 36 H 1.08999 * 109.90258 * 316.54148 * 11 10 9 37 37 H 1.08999 * 109.96248 * 195.44036 * 11 10 9 38 38 H 1.09000 * 109.47548 * 298.20431 * 12 11 10 39 39 H 1.08998 * 109.47173 * 178.19763 * 12 11 10 40 40 H 1.09002 * 108.99880 * 43.31000 * 13 12 11 41 41 H 1.09004 * 109.00025 * 162.15355 * 13 12 11 42 42 H 1.09003 * 109.47550 * 197.26718 * 14 13 12 43 43 H 1.09009 * 109.47436 * 317.26494 * 14 13 12 44 44 H 1.08998 * 109.91712 * 182.31871 * 15 14 13 45 45 H 1.09002 * 109.93607 * 61.15390 * 15 14 13 46 46 H 1.08999 * 109.90331 * 163.87358 * 16 10 9 47 47 H 1.09006 * 109.90154 * 285.00260 * 16 10 9 48 48 H 1.09004 * 109.46989 * 317.87231 * 17 7 6 49 49 H 1.08999 * 109.46902 * 77.87780 * 17 7 6 50 50 H 1.07997 * 126.83578 * 180.22406 * 18 3 2 51 51 H 1.08999 * 109.47432 * 60.00198 * 20 19 18 52 52 H 0.96697 * 113.99614 * 299.99392 * 21 20 19 53 53 H 0.96997 * 124.84396 * 0.02562 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3071 1.1093 0.0000 4 6 1.8703 2.5156 -0.0005 5 8 0.6840 2.7839 -0.0063 6 7 2.7849 3.5054 0.0054 7 6 2.3503 4.9045 0.0043 8 6 3.4547 5.7672 -0.5985 9 6 2.8712 7.1285 -1.0186 10 14 2.1282 7.9053 0.5057 11 6 3.4761 8.5790 1.6050 12 6 3.9759 9.8869 0.9649 13 6 2.8108 10.8616 0.8236 14 6 1.9121 10.5039 -0.3560 15 6 1.0092 9.3184 0.0260 16 6 1.1561 6.5956 1.4105 17 6 2.0196 5.3212 1.4341 18 6 3.6883 0.6152 0.0071 19 6 3.6096 -0.7274 0.0048 20 6 4.7820 -1.6742 0.0106 21 8 5.5829 -1.4478 -1.1510 22 14 4.1616 -3.4309 0.0052 23 1 3.3437 -3.6632 -1.2123 24 1 5.3169 -4.3638 0.0116 25 1 3.3296 -3.6657 1.2126 26 7 2.2949 -1.0922 -0.0031 27 1 -0.3632 -0.0001 -1.0277 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3633 0.8899 0.5138 30 1 3.7310 3.2915 0.0103 31 1 1.4537 4.9967 -0.6086 32 1 3.8718 5.2655 -1.4717 33 1 4.2400 5.9212 0.1416 34 1 2.0997 6.9840 -1.7750 35 1 3.6619 7.7669 -1.4126 36 1 4.2942 7.8619 1.6709 37 1 3.0788 8.7810 2.5997 38 1 4.3925 9.6737 -0.0195 39 1 4.7455 10.3299 1.5970 40 1 2.2193 10.8427 1.7390 41 1 3.2051 11.8672 0.6771 42 1 1.2917 11.3622 -0.6136 43 1 2.5284 10.2309 -1.2127 44 1 0.3933 9.0311 -0.8261 45 1 0.3741 9.5914 0.8688 46 1 0.9507 6.9235 2.4295 47 1 0.2203 6.4001 0.8869 48 1 1.4708 4.5196 1.9284 49 1 2.9435 5.5183 1.9779 50 1 4.5890 1.2109 0.0124 51 1 5.3821 -1.5039 0.9044 52 1 5.1124 -1.5814 -1.9852 53 1 1.9735 -2.0073 -0.0060 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_15739362_9865296.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 16:17:12 Heat of formation + Delta-G solvation = -86.894137 kcal Electronic energy + Delta-G solvation = -29293.645852 eV Core-core repulsion = 25480.977538 eV Total energy + Delta-G solvation = -3812.668314 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 350.194 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.50456 -40.48926 -37.88337 -37.58063 -37.28513 -34.01188 -32.81565 -32.01005 -31.97310 -31.82789 -28.94738 -27.57879 -26.67102 -25.24876 -23.58393 -23.34056 -23.05938 -21.66445 -21.27931 -21.00171 -20.43750 -18.68413 -17.80304 -17.30254 -16.82896 -16.58577 -16.30014 -16.05384 -15.81582 -15.64099 -15.19019 -15.08692 -14.96947 -14.84596 -14.65275 -14.58980 -14.16017 -13.92089 -13.68805 -13.63047 -13.41377 -13.33463 -13.22863 -13.03184 -12.74072 -12.71043 -12.58643 -12.49016 -12.27277 -12.26061 -12.12075 -12.05902 -11.92015 -11.84716 -11.54458 -11.38923 -10.91480 -10.46615 -10.27381 -10.15122 -10.06209 -10.03810 -9.79231 -9.16164 0.68433 1.02974 1.24832 1.34626 1.41063 1.79655 1.89005 1.91554 1.99286 2.02038 2.44779 2.54624 2.69861 3.44955 3.72864 3.79706 3.83344 4.05234 4.07155 4.15376 4.17319 4.20571 4.26033 4.33043 4.39385 4.48681 4.51912 4.55420 4.60294 4.66183 4.66607 4.69570 4.77277 4.84349 4.85651 4.89091 4.98567 5.00620 5.05840 5.17807 5.20762 5.25766 5.26322 5.30410 5.32101 5.43058 5.45072 5.46272 5.51786 5.55534 5.63172 5.68837 5.71389 5.84809 6.36120 6.66187 6.70470 7.38993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.112 3.888 3 C -0.263 4.263 4 C 0.585 3.415 5 O -0.587 6.587 6 N -0.715 5.715 7 C 0.138 3.862 8 C -0.113 4.113 9 C -0.408 4.408 10 Si 1.055 2.945 11 C -0.409 4.409 12 C -0.112 4.112 13 C -0.135 4.135 14 C -0.112 4.112 15 C -0.422 4.422 16 C -0.421 4.421 17 C -0.114 4.114 18 C -0.133 4.133 19 C -0.027 4.027 20 C -0.044 4.044 21 O -0.545 6.545 22 Si 0.961 3.039 23 H -0.249 1.249 24 H -0.259 1.259 25 H -0.252 1.252 26 N -0.544 5.544 27 H 0.083 0.917 28 H 0.088 0.912 29 H 0.081 0.919 30 H 0.411 0.589 31 H 0.065 0.935 32 H 0.074 0.926 33 H 0.089 0.911 34 H 0.074 0.926 35 H 0.094 0.906 36 H 0.082 0.918 37 H 0.073 0.927 38 H 0.072 0.928 39 H 0.059 0.941 40 H 0.061 0.939 41 H 0.061 0.939 42 H 0.055 0.945 43 H 0.071 0.929 44 H 0.072 0.928 45 H 0.071 0.929 46 H 0.077 0.923 47 H 0.063 0.937 48 H 0.039 0.961 49 H 0.081 0.919 50 H 0.162 0.838 51 H 0.138 0.862 52 H 0.389 0.611 53 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.534 -2.035 -0.367 4.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.007 4.007 3 C -0.273 4.273 4 C 0.375 3.625 5 O -0.469 6.469 6 N -0.365 5.365 7 C 0.034 3.966 8 C -0.150 4.150 9 C -0.494 4.494 10 Si 1.246 2.754 11 C -0.496 4.496 12 C -0.149 4.149 13 C -0.172 4.172 14 C -0.150 4.150 15 C -0.507 4.507 16 C -0.505 4.505 17 C -0.153 4.153 18 C -0.157 4.157 19 C -0.135 4.135 20 C -0.155 4.155 21 O -0.351 6.351 22 Si 0.783 3.217 23 H -0.172 1.172 24 H -0.183 1.183 25 H -0.176 1.176 26 N -0.144 5.144 27 H 0.102 0.898 28 H 0.106 0.894 29 H 0.100 0.900 30 H 0.247 0.753 31 H 0.084 0.916 32 H 0.093 0.907 33 H 0.107 0.893 34 H 0.093 0.907 35 H 0.112 0.888 36 H 0.101 0.899 37 H 0.092 0.908 38 H 0.091 0.909 39 H 0.078 0.922 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.073 0.927 43 H 0.090 0.910 44 H 0.091 0.909 45 H 0.090 0.910 46 H 0.096 0.904 47 H 0.082 0.918 48 H 0.058 0.942 49 H 0.100 0.900 50 H 0.180 0.820 51 H 0.156 0.844 52 H 0.239 0.761 53 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges 2.860 -2.717 0.061 3.945 hybrid contribution -0.415 -0.163 -0.251 0.512 sum 2.445 -2.879 -0.190 3.782 Atomic orbital electron populations 1.20598 0.86302 1.04479 1.03970 1.20549 0.94244 0.85696 1.00210 1.20252 0.94360 0.91710 1.20995 1.17627 0.85114 0.84992 0.74773 1.90721 1.18148 1.85002 1.53013 1.45854 1.10084 1.05530 1.75039 1.21053 0.98690 0.80106 0.96760 1.21507 0.96914 0.95072 1.01550 1.26237 1.07092 1.01607 1.14486 0.78625 0.66131 0.64267 0.66416 1.26303 1.12666 1.02290 1.08308 1.21276 0.97345 0.94994 1.01304 1.21534 0.97191 0.99596 0.98910 1.21254 0.97650 0.97901 0.98178 1.26400 1.07696 1.11388 1.05189 1.26471 1.06337 1.08793 1.08907 1.21589 1.00301 0.97334 0.96026 1.21982 0.95323 0.93072 1.05312 1.20858 0.84561 0.95988 1.12100 1.24449 0.91855 1.06258 0.92967 1.86530 1.39542 1.92969 1.16079 0.85519 0.80269 0.74663 0.81235 1.17238 1.18298 1.17595 1.41742 1.05629 1.08617 1.58369 0.89831 0.89373 0.89998 0.75294 0.91631 0.90741 0.89278 0.90742 0.88772 0.89874 0.90845 0.90939 0.92218 0.92036 0.91997 0.92667 0.90998 0.90904 0.91035 0.90404 0.91776 0.94249 0.90026 0.82011 0.84436 0.76128 0.73870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.20 9.88 71.24 0.70 0.51 16 2 C 0.11 0.41 7.18 41.78 0.30 0.71 16 3 C -0.26 -1.56 6.29 -19.04 -0.12 -1.68 16 4 C 0.58 5.45 7.55 86.62 0.65 6.10 16 5 O -0.59 -9.42 14.47 -4.12 -0.06 -9.48 16 6 N -0.71 -2.33 5.04 -447.36 -2.25 -4.59 16 7 C 0.14 0.37 2.01 44.69 0.09 0.46 16 8 C -0.11 0.31 5.07 30.77 0.16 0.46 16 9 C -0.41 1.32 4.97 72.30 0.36 1.68 16 10 Si 1.06 -3.58 9.19 68.60 0.63 -2.95 16 11 C -0.41 1.31 4.97 72.30 0.36 1.66 16 12 C -0.11 0.27 5.64 30.77 0.17 0.44 16 13 C -0.13 0.16 5.41 30.30 0.16 0.32 16 14 C -0.11 0.10 5.62 30.73 0.17 0.27 16 15 C -0.42 0.34 4.97 72.26 0.36 0.70 16 16 C -0.42 -0.65 4.97 72.30 0.36 -0.29 16 17 C -0.11 -0.35 5.20 30.77 0.16 -0.19 16 18 C -0.13 -0.16 10.43 23.62 0.25 0.09 16 19 C -0.03 0.03 6.11 40.98 0.25 0.28 16 20 C -0.04 0.20 2.98 71.23 0.21 0.41 16 21 O -0.54 1.67 12.87 -148.98 -1.92 -0.24 16 22 Si 0.96 -5.14 26.23 68.60 1.80 -3.34 16 23 H -0.25 1.33 7.11 99.48 0.71 2.04 16 24 H -0.26 0.42 7.11 99.48 0.71 1.12 16 25 H -0.25 1.14 7.11 99.48 0.71 1.85 16 26 N -0.54 0.59 5.41 -171.07 -0.93 -0.33 16 27 H 0.08 0.10 8.14 -2.39 -0.02 0.08 16 28 H 0.09 -0.27 8.14 -2.39 -0.02 -0.29 16 29 H 0.08 0.60 6.47 -2.39 -0.02 0.58 16 30 H 0.41 -0.83 7.70 -92.71 -0.71 -1.55 16 31 H 0.07 0.50 7.33 -2.39 -0.02 0.48 16 32 H 0.07 -0.21 8.13 -2.39 -0.02 -0.23 16 33 H 0.09 -0.55 7.72 -2.39 -0.02 -0.57 16 34 H 0.07 -0.14 7.98 -2.38 -0.02 -0.15 16 35 H 0.09 -0.50 7.98 -2.39 -0.02 -0.52 16 36 H 0.08 -0.39 7.98 -2.39 -0.02 -0.41 16 37 H 0.07 -0.18 7.98 -2.39 -0.02 -0.19 16 38 H 0.07 -0.31 7.71 -2.39 -0.02 -0.33 16 39 H 0.06 -0.11 8.14 -2.39 -0.02 -0.13 16 40 H 0.06 -0.04 7.88 -2.39 -0.02 -0.05 16 41 H 0.06 -0.08 8.14 -2.38 -0.02 -0.10 16 42 H 0.05 0.01 8.14 -2.39 -0.02 -0.01 16 43 H 0.07 -0.19 7.71 -2.38 -0.02 -0.21 16 44 H 0.07 -0.04 7.98 -2.39 -0.02 -0.06 16 45 H 0.07 0.00 7.98 -2.39 -0.02 -0.02 16 46 H 0.08 0.08 7.98 -2.39 -0.02 0.06 16 47 H 0.06 0.28 7.98 -2.38 -0.02 0.26 16 48 H 0.04 0.35 7.89 -2.38 -0.02 0.33 16 49 H 0.08 -0.07 7.72 -2.39 -0.02 -0.08 16 50 H 0.16 -0.41 7.70 -2.91 -0.02 -0.44 16 51 H 0.14 -0.91 7.96 -2.39 -0.02 -0.93 16 52 H 0.39 -3.42 8.70 -74.06 -0.64 -4.06 16 53 H 0.42 -2.44 6.70 -92.71 -0.62 -3.06 16 Total: 0.00 -17.13 405.64 1.56 -15.58 By element: Atomic # 1 Polarization: -6.28 SS G_CDS: -0.31 Total: -6.60 kcal Atomic # 6 Polarization: 7.35 SS G_CDS: 4.60 Total: 11.95 kcal Atomic # 7 Polarization: -1.74 SS G_CDS: -3.18 Total: -4.92 kcal Atomic # 8 Polarization: -7.75 SS G_CDS: -1.98 Total: -9.72 kcal Atomic # 14 Polarization: -8.72 SS G_CDS: 2.43 Total: -6.29 kcal Total: -17.13 1.56 -15.58 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_15739362_9865296.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.318 kcal (2) G-P(sol) polarization free energy of solvation -17.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds