Wall clock time and date at job start Thu Mar 4 2021 19:05:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35656 * 117.00257 * 2 1 4 4 C 1.38400 * 120.11899 * 359.97438 * 3 2 1 5 5 C 1.38726 * 120.03215 * 180.02562 * 4 3 2 6 6 O 1.35706 * 119.86560 * 179.97438 * 5 4 3 7 7 C 1.42899 * 117.00260 * 359.97438 * 6 5 4 8 8 C 1.39148 * 120.27039 * 359.97438 * 5 4 3 9 9 C 1.50699 * 119.87987 * 179.97438 * 8 5 4 10 10 O 1.42904 * 109.47406 * 285.00587 * 9 8 5 11 11 Si 1.86303 * 109.47378 * 165.00449 * 9 8 5 12 12 C 1.37577 * 120.24176 * 359.74528 * 8 5 4 13 13 C 1.39816 * 119.96652 * 0.51044 * 12 8 5 14 14 C 1.47298 * 120.14238 * 179.76863 * 13 12 8 15 15 O 1.21618 * 120.00486 * 179.72264 * 14 13 12 16 16 N 1.34781 * 119.99497 * 359.72263 * 14 13 12 17 17 C 1.46504 * 119.99665 * 180.02562 * 16 14 13 18 18 H 1.08994 * 112.90940 * 336.24759 * 17 16 14 19 19 C 1.53779 * 113.61484 * 107.49929 * 17 16 14 20 20 C 1.53785 * 87.08093 * 89.11287 * 19 17 16 21 21 H 1.09002 * 113.61570 * 270.88522 * 20 19 17 22 22 C 1.52995 * 113.69093 * 139.99088 * 20 19 17 23 23 F 1.39904 * 109.47303 * 320.93729 * 22 20 19 24 24 F 1.39899 * 109.47493 * 80.93617 * 22 20 19 25 25 F 1.39902 * 109.47433 * 200.93865 * 22 20 19 26 26 C 1.53781 * 87.08241 * 25.43228 * 20 19 17 27 27 H 1.09008 * 109.46677 * 300.00137 * 1 2 3 28 28 H 1.08994 * 109.46899 * 59.99494 * 1 2 3 29 29 H 1.08998 * 109.47434 * 180.02562 * 1 2 3 30 30 H 1.07998 * 119.98596 * 0.02562 * 4 3 2 31 31 H 1.09003 * 109.46613 * 60.00119 * 7 6 5 32 32 H 1.08994 * 109.47372 * 179.97438 * 7 6 5 33 33 H 1.09000 * 109.47159 * 300.00219 * 7 6 5 34 34 H 1.09002 * 109.47030 * 44.99864 * 9 8 5 35 35 H 0.96706 * 113.99724 * 299.99592 * 10 9 8 36 36 H 1.48494 * 110.00071 * 180.02562 * 11 9 8 37 37 H 1.48498 * 109.99551 * 301.31867 * 11 9 8 38 38 H 1.08004 * 120.02354 * 180.25324 * 12 8 5 39 39 H 0.96996 * 120.00382 * 359.97438 * 16 14 13 40 40 H 1.09003 * 113.61775 * 334.57164 * 19 17 16 41 41 H 1.08996 * 113.61960 * 203.65890 * 19 17 16 42 42 H 1.09005 * 113.61302 * 89.11252 * 26 20 19 43 43 H 1.08993 * 113.62030 * 220.02098 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2087 0.0000 4 6 1.2937 2.3710 -0.0005 5 6 1.9254 3.6061 -0.0011 6 8 1.1854 4.7436 -0.0021 7 6 -0.2357 4.5932 -0.0032 8 6 3.3147 3.6833 -0.0005 9 6 3.9918 5.0296 -0.0017 10 8 3.8948 5.6105 -1.3037 11 14 5.7864 4.8227 0.4538 12 6 4.0725 2.5350 0.0058 13 6 3.4463 1.2850 0.0010 14 6 4.2539 0.0531 0.0026 15 8 3.7065 -1.0329 0.0035 16 7 5.5995 0.1296 0.0031 17 6 6.4028 -1.0956 0.0042 18 1 5.8667 -1.9540 0.4088 19 6 7.0954 -1.3792 -1.3392 20 6 8.2752 -0.5417 -0.8181 21 1 8.1894 0.5213 -1.0436 22 6 9.6455 -1.1174 -1.1810 23 9 9.6092 -2.5117 -1.0724 24 9 9.9684 -0.7602 -2.4945 25 9 10.6120 -0.6068 -0.3079 26 6 7.8083 -0.9101 0.6001 27 1 -0.3633 0.5139 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 0.2151 2.3165 -0.0005 31 1 -0.5435 4.0443 0.8868 32 1 -0.7052 5.5768 -0.0035 33 1 -0.5422 4.0436 -0.8932 34 1 3.5055 5.6815 0.7240 35 1 4.3073 5.0831 -2.0015 36 1 6.4652 6.1434 0.4568 37 1 5.9008 4.1903 1.7925 38 1 5.1506 2.5991 0.0103 39 1 6.0361 0.9958 0.0020 40 1 6.5880 -0.9336 -2.1948 41 1 7.3398 -2.4305 -1.4911 42 1 8.2475 -1.8333 0.9783 43 1 7.8762 -0.0859 1.3101 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_15744634_12297780.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 19:05:11 Heat of formation + Delta-G solvation = -228.902422 kcal Electronic energy + Delta-G solvation = -33561.393202 eV Core-core repulsion = 28353.548507 eV Total energy + Delta-G solvation = -5207.844695 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 362.122 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -51.00820 -48.53513 -48.49619 -42.13181 -41.04840 -40.09981 -39.12883 -38.41957 -36.97027 -34.49110 -32.23767 -31.72343 -29.02723 -28.92521 -28.06159 -26.84764 -26.12222 -24.96270 -23.89480 -22.78201 -21.72522 -20.72459 -20.02757 -19.42364 -19.27197 -18.94400 -18.42785 -18.08115 -17.89021 -17.23759 -17.03693 -16.62757 -16.46173 -16.29149 -15.85164 -15.78071 -15.76304 -15.54391 -15.42781 -15.33101 -15.02114 -14.94734 -14.70257 -14.68142 -14.58234 -14.24818 -14.17712 -13.92967 -13.70692 -13.49590 -13.39557 -13.22699 -12.67209 -12.54530 -12.52545 -12.25993 -12.21797 -11.98356 -11.79458 -11.64795 -11.53034 -10.94293 -10.37308 -10.14792 -9.91967 -9.19422 -5.05241 -0.26318 0.08546 1.31733 1.65643 1.74519 1.87705 2.02397 2.04565 2.11731 2.17771 2.59886 2.82769 2.90164 3.07354 3.43768 3.49843 3.53459 3.61073 3.69943 3.74163 3.80210 3.84929 4.05518 4.11895 4.17902 4.23197 4.25838 4.27071 4.28627 4.48653 4.54820 4.62776 4.66117 4.67756 4.73120 4.75749 4.84531 4.92853 4.96329 5.01772 5.04588 5.30107 5.54018 6.02765 6.28238 6.53870 6.85965 7.25838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.303 6.303 3 C 0.218 3.782 4 C -0.313 4.313 5 C 0.212 3.788 6 O -0.315 6.315 7 C 0.012 3.988 8 C -0.204 4.204 9 C -0.063 4.063 10 O -0.554 6.554 11 Si 0.776 3.224 12 C 0.011 3.989 13 C -0.225 4.225 14 C 0.569 3.431 15 O -0.560 6.560 16 N -0.701 5.701 17 C 0.125 3.875 18 H 0.096 0.904 19 C -0.140 4.140 20 C -0.159 4.159 21 H 0.164 0.836 22 C 0.454 3.546 23 F -0.191 7.191 24 F -0.192 7.192 25 F -0.189 7.189 26 C -0.125 4.125 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.113 0.887 30 H 0.161 0.839 31 H 0.069 0.931 32 H 0.117 0.883 33 H 0.069 0.931 34 H 0.097 0.903 35 H 0.393 0.607 36 H -0.298 1.298 37 H -0.270 1.270 38 H 0.171 0.829 39 H 0.414 0.586 40 H 0.091 0.909 41 H 0.101 0.899 42 H 0.107 0.893 43 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.163 2.393 -0.229 3.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.214 6.214 3 C 0.168 3.832 4 C -0.332 4.332 5 C 0.164 3.836 6 O -0.226 6.226 7 C -0.082 4.082 8 C -0.205 4.205 9 C -0.172 4.172 10 O -0.362 6.362 11 Si 0.680 3.320 12 C -0.007 4.007 13 C -0.229 4.229 14 C 0.359 3.641 15 O -0.439 6.439 16 N -0.355 5.355 17 C 0.020 3.980 18 H 0.114 0.886 19 C -0.178 4.178 20 C -0.178 4.178 21 H 0.182 0.818 22 C 0.400 3.600 23 F -0.173 7.173 24 F -0.174 7.174 25 F -0.171 7.171 26 C -0.163 4.163 27 H 0.088 0.912 28 H 0.089 0.911 29 H 0.131 0.869 30 H 0.178 0.822 31 H 0.087 0.913 32 H 0.136 0.864 33 H 0.088 0.912 34 H 0.114 0.886 35 H 0.243 0.757 36 H -0.226 1.226 37 H -0.196 1.196 38 H 0.188 0.812 39 H 0.253 0.747 40 H 0.110 0.890 41 H 0.119 0.881 42 H 0.125 0.875 43 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -2.101 2.259 0.658 3.155 hybrid contribution -0.849 0.364 0.064 0.926 sum -2.950 2.623 0.722 4.013 Atomic orbital electron populations 1.23464 0.76588 1.05757 1.02568 1.86362 1.23126 1.25878 1.86011 1.18994 0.91243 0.84592 0.88341 1.21413 1.01991 0.90848 1.18940 1.18985 0.91095 0.84866 0.88701 1.86141 1.21062 1.28887 1.86525 1.23452 0.76324 1.05776 1.02605 1.19617 0.90824 0.96858 1.13232 1.25103 1.11505 0.91644 0.88959 1.86517 1.82669 1.50237 1.16796 0.94381 0.73258 0.81640 0.82739 1.20861 0.99783 0.88566 0.91452 1.19113 0.90628 0.93853 1.19327 1.17967 0.82418 0.88237 0.75524 1.90838 1.72303 1.30260 1.50503 1.45400 1.04847 1.09726 1.75481 1.21641 0.91239 0.88507 0.96640 0.88550 1.23514 0.94051 1.01307 0.98971 1.24269 0.87624 1.04788 1.01092 0.81821 1.20832 0.89267 0.75842 0.74036 1.93155 1.96787 1.31559 1.95771 1.93182 1.94214 1.91615 1.38379 1.93186 1.67338 1.86899 1.69663 1.23379 0.93369 1.05150 0.94435 0.91202 0.91055 0.86859 0.82188 0.91276 0.86430 0.91213 0.88590 0.75743 1.22615 1.19636 0.81233 0.74693 0.89016 0.88064 0.87457 0.87054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.02 9.81 113.37 1.11 1.09 16 2 O -0.30 -2.02 8.56 -68.76 -0.59 -2.61 16 3 C 0.22 0.91 6.70 22.82 0.15 1.07 16 4 C -0.31 -0.19 8.01 22.43 0.18 -0.01 16 5 C 0.21 0.34 6.67 22.61 0.15 0.50 16 6 O -0.31 -0.66 9.80 -90.27 -0.88 -1.54 16 7 C 0.01 -0.06 9.80 113.37 1.11 1.05 16 8 C -0.20 0.18 5.27 -19.80 -0.10 0.07 16 9 C -0.06 0.08 2.37 71.24 0.17 0.25 16 10 O -0.55 0.09 12.88 -148.98 -1.92 -1.83 16 11 Si 0.78 -4.48 29.90 68.60 2.05 -2.43 16 12 C 0.01 -0.04 8.14 22.50 0.18 0.14 16 13 C -0.23 -0.45 5.89 -20.00 -0.12 -0.57 16 14 C 0.57 2.28 7.76 86.63 0.67 2.96 16 15 O -0.56 -7.37 14.75 16.87 0.25 -7.12 16 16 N -0.70 3.15 5.21 -443.41 -2.31 0.84 16 17 C 0.13 -0.52 4.32 45.52 0.20 -0.33 16 18 H 0.10 0.07 7.46 -2.39 -0.02 0.05 16 19 C -0.14 0.73 7.32 31.12 0.23 0.96 16 20 C -0.16 1.24 3.67 -10.27 -0.04 1.21 16 21 H 0.16 -2.27 8.14 -2.39 -0.02 -2.29 16 22 C 0.45 -0.70 3.01 71.98 0.22 -0.49 16 23 F -0.19 -0.29 15.75 44.97 0.71 0.42 16 24 F -0.19 -0.27 17.32 44.97 0.78 0.51 16 25 F -0.19 -0.10 17.20 44.97 0.77 0.67 16 26 C -0.13 1.03 7.20 31.12 0.22 1.25 16 27 H 0.07 -0.36 7.66 -2.38 -0.02 -0.38 16 28 H 0.07 -0.38 7.66 -2.39 -0.02 -0.40 16 29 H 0.11 -0.46 8.14 -2.39 -0.02 -0.48 16 30 H 0.16 -0.62 4.50 -2.91 -0.01 -0.63 16 31 H 0.07 -0.50 7.65 -2.39 -0.02 -0.52 16 32 H 0.12 -0.90 8.14 -2.39 -0.02 -0.92 16 33 H 0.07 -0.49 7.65 -2.39 -0.02 -0.51 16 34 H 0.10 0.20 7.82 -2.39 -0.02 0.18 16 35 H 0.39 -3.57 8.70 -74.05 -0.64 -4.22 16 36 H -0.30 -0.76 7.11 99.48 0.71 -0.06 16 37 H -0.27 0.64 7.11 99.48 0.71 1.35 16 38 H 0.17 -2.05 3.43 -2.91 -0.01 -2.06 16 39 H 0.41 -4.94 6.72 -92.71 -0.62 -5.56 16 40 H 0.09 -0.48 8.14 -2.39 -0.02 -0.50 16 41 H 0.10 -0.37 7.18 -2.39 -0.02 -0.39 16 42 H 0.11 -0.78 7.83 -2.38 -0.02 -0.80 16 43 H 0.11 -1.29 8.14 -2.39 -0.02 -1.30 16 Total: 0.00 -26.46 366.47 3.08 -23.38 By element: Atomic # 1 Polarization: -19.31 SS G_CDS: -0.12 Total: -19.43 kcal Atomic # 6 Polarization: 4.80 SS G_CDS: 4.34 Total: 9.14 kcal Atomic # 7 Polarization: 3.15 SS G_CDS: -2.31 Total: 0.84 kcal Atomic # 8 Polarization: -9.96 SS G_CDS: -3.14 Total: -13.10 kcal Atomic # 9 Polarization: -0.66 SS G_CDS: 2.26 Total: 1.60 kcal Atomic # 14 Polarization: -4.48 SS G_CDS: 2.05 Total: -2.43 kcal Total: -26.46 3.08 -23.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_15744634_12297780.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -205.521 kcal (2) G-P(sol) polarization free energy of solvation -26.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -231.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -228.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds