Wall clock time and date at job start Thu Mar 4 2021 19:06:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42907 * 1 3 3 Si 1.86295 * 109.46996 * 2 1 4 4 C 1.50698 * 109.47244 * 239.99853 * 2 1 3 5 5 C 1.33738 * 125.12225 * 300.02604 * 4 2 1 6 6 C 1.37796 * 115.08526 * 179.76762 * 5 4 2 7 7 C 1.34980 * 114.69872 * 0.43054 * 6 5 4 8 8 C 1.47564 * 125.27837 * 179.85885 * 7 6 5 9 9 C 1.39819 * 119.99899 * 179.72174 * 8 7 6 10 10 C 1.36568 * 119.99954 * 179.97438 * 9 8 7 11 11 C 1.39825 * 119.99650 * 359.97438 * 10 9 8 12 12 C 1.47558 * 120.00165 * 179.97438 * 11 10 9 13 13 O 1.21601 * 119.99939 * 359.97438 * 12 11 10 14 14 N 1.34772 * 120.00462 * 180.02562 * 12 11 10 15 15 C 1.46506 * 120.00033 * 180.02562 * 14 12 11 16 16 H 1.08992 * 112.90684 * 336.24748 * 15 14 12 17 17 C 1.54049 * 113.61276 * 107.61836 * 15 14 12 18 18 C 1.53781 * 87.08031 * 89.07129 * 17 15 14 19 19 H 1.09003 * 113.69043 * 270.86777 * 18 17 15 20 20 C 1.52991 * 113.61611 * 139.97702 * 18 17 15 21 21 F 1.39901 * 109.47365 * 322.50364 * 20 18 17 22 22 F 1.39902 * 109.47259 * 82.50273 * 20 18 17 23 23 F 1.39900 * 109.47459 * 202.50218 * 20 18 17 24 24 C 1.53781 * 87.08070 * 25.42738 * 18 17 15 25 25 C 1.39832 * 120.00115 * 0.25655 * 11 10 9 26 26 C 1.36564 * 119.99719 * 359.50475 * 25 11 10 27 27 S 1.75859 * 125.11848 * 120.02430 * 4 2 1 28 28 H 0.96702 * 113.99707 * 60.00101 * 1 2 3 29 29 H 1.09001 * 109.46565 * 119.99729 * 2 1 3 30 30 H 1.48503 * 110.00185 * 59.99716 * 3 2 1 31 31 H 1.48498 * 109.99938 * 181.31500 * 3 2 1 32 32 H 1.08011 * 122.45677 * 359.97438 * 5 4 2 33 33 H 1.08003 * 122.65532 * 180.27047 * 6 5 4 34 34 H 1.07993 * 120.00324 * 359.97438 * 9 8 7 35 35 H 1.07994 * 119.99569 * 179.97438 * 10 9 8 36 36 H 0.97002 * 120.00078 * 359.97438 * 14 12 11 37 37 H 1.09005 * 113.62125 * 334.52173 * 17 15 14 38 38 H 1.09003 * 113.61268 * 203.61961 * 17 15 14 39 39 H 1.09002 * 113.61445 * 89.11830 * 24 18 17 40 40 H 1.09002 * 113.61408 * 219.93560 * 24 18 17 41 41 H 1.08003 * 120.00350 * 179.74732 * 25 11 10 42 42 H 1.08005 * 119.99843 * 180.23282 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7104 -1.2304 5 6 1.6719 -1.9846 -1.5431 6 6 2.2333 -2.4227 -2.7227 7 6 2.9674 -1.4972 -3.3759 8 6 3.6723 -1.7151 -4.6538 9 6 4.3988 -0.6731 -5.2380 10 6 5.0516 -0.8750 -6.4205 11 6 4.9938 -2.1239 -7.0466 12 6 5.6986 -2.3420 -8.3245 13 8 6.3294 -1.4354 -8.8333 14 7 5.6424 -3.5456 -8.9282 15 6 6.3427 -3.7622 -10.1967 16 1 6.5132 -2.8388 -10.7503 17 6 7.5975 -4.6462 -10.0658 18 6 6.6758 -5.8535 -10.3059 19 1 6.2452 -6.2642 -9.3926 20 6 7.2923 -6.9257 -11.2064 21 9 8.0401 -6.3122 -12.2172 22 9 8.1265 -7.7511 -10.4449 23 9 6.2741 -7.6943 -11.7807 24 6 5.7371 -4.8892 -11.0500 25 6 4.2631 -3.1646 -6.4647 26 6 3.6144 -2.9640 -5.2799 27 16 2.9473 0.0112 -2.4714 28 1 -0.3933 0.4417 -0.7651 29 1 1.7923 -0.5138 0.8900 30 1 1.5614 2.4679 1.2085 31 1 3.5346 1.7703 -0.0320 32 1 1.0638 -2.6224 -0.9185 33 1 2.0990 -3.4279 -3.0941 34 1 4.4439 0.2913 -4.7542 35 1 5.6125 -0.0700 -6.8718 36 1 5.1390 -4.2687 -8.5226 37 1 8.0428 -4.6278 -9.0710 38 1 8.3272 -4.4890 -10.8602 39 1 5.9581 -4.7985 -12.1136 40 1 4.6805 -5.0679 -10.8510 41 1 4.2151 -4.1280 -6.9504 42 1 3.0532 -3.7689 -4.8285 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_15744634_13308390.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 19:06:51 Heat of formation + Delta-G solvation = -125.974319 kcal Electronic energy + Delta-G solvation = -31012.802481 eV Core-core repulsion = 26023.033151 eV Total energy + Delta-G solvation = -4989.769329 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 384.079 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -51.09036 -48.61507 -48.57927 -41.65217 -40.38629 -39.40825 -38.82988 -37.35578 -34.81699 -33.34983 -32.21516 -30.52836 -28.99672 -27.19732 -26.93535 -24.97554 -24.14398 -23.86253 -23.31896 -21.92919 -20.83020 -20.24131 -19.60306 -19.35463 -19.08951 -18.83223 -18.37018 -17.63508 -17.16438 -16.62649 -16.32853 -16.20610 -16.13870 -16.07077 -15.61934 -15.54357 -15.49955 -15.13645 -15.02718 -14.91604 -14.78182 -14.75909 -14.52068 -14.46433 -14.33816 -14.15220 -13.89054 -13.69743 -13.60421 -13.58219 -13.25164 -13.08733 -12.58778 -12.32404 -12.28615 -12.06450 -11.89652 -11.63870 -11.55975 -11.17653 -10.80952 -10.53703 -10.23540 -10.17292 -9.54684 -9.02717 -5.16250 -0.88553 0.25442 0.35446 0.38978 0.76753 1.22085 1.51964 1.58620 1.79048 1.84930 1.94702 1.95076 2.72810 2.81167 2.83739 2.98429 3.39611 3.40357 3.44854 3.56384 3.67304 3.70178 3.72709 3.76110 3.85604 3.96523 4.21133 4.32297 4.37134 4.43661 4.47231 4.55431 4.59069 4.61050 4.67767 4.75677 4.85936 4.91802 4.93665 5.02215 5.11716 5.23119 5.29963 5.33337 5.41874 5.49117 5.74432 6.40098 6.66416 7.08792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.547 6.547 2 C -0.025 4.025 3 Si 0.717 3.283 4 C -0.222 4.222 5 C -0.110 4.110 6 C -0.116 4.116 7 C -0.160 4.160 8 C 0.007 3.993 9 C -0.129 4.129 10 C -0.063 4.063 11 C -0.151 4.151 12 C 0.563 3.437 13 O -0.576 6.576 14 N -0.695 5.695 15 C 0.123 3.877 16 H 0.099 0.901 17 C -0.141 4.141 18 C -0.158 4.158 19 H 0.158 0.842 20 C 0.454 3.546 21 F -0.189 7.189 22 F -0.193 7.193 23 F -0.189 7.189 24 C -0.122 4.122 25 C -0.066 4.066 26 C -0.109 4.109 27 S 0.121 5.879 28 H 0.397 0.603 29 H 0.122 0.878 30 H -0.270 1.270 31 H -0.268 1.268 32 H 0.153 0.847 33 H 0.167 0.833 34 H 0.133 0.867 35 H 0.129 0.871 36 H 0.417 0.583 37 H 0.087 0.913 38 H 0.104 0.896 39 H 0.109 0.891 40 H 0.111 0.889 41 H 0.165 0.835 42 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.756 -2.114 0.781 5.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.355 6.355 2 C -0.138 4.138 3 Si 0.621 3.379 4 C -0.339 4.339 5 C -0.141 4.141 6 C -0.146 4.146 7 C -0.276 4.276 8 C 0.005 3.995 9 C -0.148 4.148 10 C -0.082 4.082 11 C -0.154 4.154 12 C 0.352 3.648 13 O -0.456 6.456 14 N -0.347 5.347 15 C 0.017 3.983 16 H 0.117 0.883 17 C -0.180 4.180 18 C -0.177 4.177 19 H 0.175 0.825 20 C 0.400 3.600 21 F -0.171 7.171 22 F -0.175 7.175 23 F -0.170 7.170 24 C -0.160 4.160 25 C -0.085 4.085 26 C -0.129 4.129 27 S 0.389 5.611 28 H 0.247 0.753 29 H 0.140 0.860 30 H -0.195 1.195 31 H -0.194 1.194 32 H 0.171 0.829 33 H 0.185 0.815 34 H 0.151 0.849 35 H 0.147 0.853 36 H 0.257 0.743 37 H 0.106 0.894 38 H 0.122 0.878 39 H 0.127 0.873 40 H 0.130 0.870 41 H 0.183 0.817 42 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -3.107 0.248 1.175 3.331 hybrid contribution -0.264 -2.253 0.406 2.304 sum -3.371 -2.005 1.581 4.229 Atomic orbital electron populations 1.86494 1.16534 1.82052 1.50415 1.24399 0.85291 1.09023 0.95115 0.94187 0.79498 0.76401 0.87855 1.25156 1.07049 0.99366 1.02349 1.20190 1.01282 0.94881 0.97712 1.20634 0.97666 1.01420 0.94927 1.23181 1.06542 0.98180 0.99738 1.18469 0.95066 0.94696 0.91283 1.21031 0.98363 0.99316 0.96111 1.20948 0.96529 0.96601 0.94107 1.19978 1.03158 0.96245 0.96022 1.18444 0.79571 0.82299 0.84513 1.90804 1.44298 1.43902 1.66626 1.45429 1.52860 1.13184 1.23230 1.21741 0.92513 0.98970 0.85073 0.88254 1.23577 0.97241 0.92434 1.04740 1.24213 1.00532 0.92410 1.00510 0.82484 1.20806 0.76289 0.82759 0.80104 1.93157 1.78048 1.82722 1.63176 1.93183 1.73669 1.74995 1.75652 1.93187 1.59811 1.77855 1.86159 1.23351 1.00864 0.91434 1.00314 1.21274 0.93673 0.98702 0.94805 1.21206 1.00027 0.96341 0.95326 1.84200 1.49109 1.13148 1.14664 0.75318 0.86044 1.19495 1.19386 0.82913 0.81546 0.84928 0.85278 0.74340 0.89396 0.87794 0.87264 0.87047 0.81727 0.82207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 0.88 12.86 -148.98 -1.92 -1.04 16 2 C -0.02 0.05 2.96 71.24 0.21 0.26 16 3 Si 0.72 -1.31 30.96 68.60 2.12 0.82 16 4 C -0.22 0.31 5.73 24.66 0.14 0.45 16 5 C -0.11 0.23 10.00 21.14 0.21 0.44 16 6 C -0.12 0.38 9.64 21.42 0.21 0.59 16 7 C -0.16 0.19 6.37 23.98 0.15 0.34 16 8 C 0.01 -0.01 5.88 -20.05 -0.12 -0.13 16 9 C -0.13 -0.04 9.54 22.26 0.21 0.17 16 10 C -0.06 -0.13 9.53 22.26 0.21 0.08 16 11 C -0.15 0.06 5.88 -20.05 -0.12 -0.06 16 12 C 0.56 1.25 7.76 86.70 0.67 1.92 16 13 O -0.58 -6.54 15.93 -4.03 -0.06 -6.60 16 14 N -0.69 3.81 5.21 -442.73 -2.31 1.50 16 15 C 0.12 -0.57 4.34 45.61 0.20 -0.37 16 16 H 0.10 -0.01 7.46 -2.39 -0.02 -0.03 16 17 C -0.14 0.71 7.33 31.21 0.23 0.94 16 18 C -0.16 1.18 3.69 -10.27 -0.04 1.14 16 19 H 0.16 -1.96 8.14 -2.39 -0.02 -1.98 16 20 C 0.45 -0.56 3.02 71.98 0.22 -0.34 16 21 F -0.19 -0.29 15.75 44.97 0.71 0.42 16 22 F -0.19 -0.40 17.32 44.97 0.78 0.38 16 23 F -0.19 -0.14 17.18 44.97 0.77 0.63 16 24 C -0.12 1.04 7.17 31.12 0.22 1.27 16 25 C -0.07 0.44 9.48 22.26 0.21 0.65 16 26 C -0.11 0.63 9.48 22.26 0.21 0.84 16 27 S 0.12 -0.12 19.46 -56.49 -1.10 -1.22 16 28 H 0.40 -3.64 8.70 -74.06 -0.64 -4.28 16 29 H 0.12 -0.19 7.96 -2.39 -0.02 -0.21 16 30 H -0.27 -1.13 7.11 99.48 0.71 -0.42 16 31 H -0.27 -0.83 7.11 99.48 0.71 -0.12 16 32 H 0.15 -0.58 8.06 -2.91 -0.02 -0.60 16 33 H 0.17 -1.41 6.88 -2.91 -0.02 -1.43 16 34 H 0.13 -0.15 7.26 -2.91 -0.02 -0.17 16 35 H 0.13 0.48 7.64 -2.91 -0.02 0.46 16 36 H 0.42 -5.22 6.71 -92.71 -0.62 -5.84 16 37 H 0.09 -0.39 8.14 -2.38 -0.02 -0.41 16 38 H 0.10 -0.38 7.13 -2.39 -0.02 -0.40 16 39 H 0.11 -0.85 7.88 -2.39 -0.02 -0.87 16 40 H 0.11 -1.33 8.14 -2.39 -0.02 -1.35 16 41 H 0.17 -2.41 6.38 -2.91 -0.02 -2.42 16 42 H 0.16 -1.78 6.74 -2.91 -0.02 -1.80 16 Total: 0.00 -20.74 379.91 1.92 -18.82 By element: Atomic # 1 Polarization: -21.77 SS G_CDS: -0.11 Total: -21.88 kcal Atomic # 6 Polarization: 5.15 SS G_CDS: 3.04 Total: 8.18 kcal Atomic # 7 Polarization: 3.81 SS G_CDS: -2.31 Total: 1.50 kcal Atomic # 8 Polarization: -5.66 SS G_CDS: -1.98 Total: -7.64 kcal Atomic # 9 Polarization: -0.83 SS G_CDS: 2.26 Total: 1.43 kcal Atomic # 14 Polarization: -1.31 SS G_CDS: 2.12 Total: 0.82 kcal Atomic # 16 Polarization: -0.12 SS G_CDS: -1.10 Total: -1.22 kcal Total: -20.74 1.92 -18.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_15744634_13308390.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.158 kcal (2) G-P(sol) polarization free energy of solvation -20.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds