Wall clock time and date at job start Thu Mar 4 2021 19:07:55
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= 0
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 O
2 2 C 1.42901 * 1
3 3 Si 1.86298 * 109.46997 * 2 1
4 4 C 1.50694 * 109.47118 * 120.00721 * 2 1 3
5 5 C 1.38246 * 119.93985 * 244.99781 * 4 2 1
6 6 C 1.38171 * 120.05565 * 180.02562 * 5 4 2
7 7 C 1.38711 * 119.94287 * 359.97438 * 6 5 4
8 8 O 1.35895 * 120.05931 * 179.97438 * 7 6 5
9 9 C 1.42904 * 116.99507 * 0.02562 * 8 7 6
10 10 C 1.50703 * 109.46894 * 179.97438 * 9 8 7
11 11 O 1.21277 * 119.99871 * 359.97438 * 10 9 8
12 12 N 1.34774 * 119.99772 * 179.97438 * 10 9 8
13 13 C 1.46507 * 119.99965 * 179.97438 * 12 10 9
14 14 H 1.09005 * 112.84562 * 23.80393 * 13 12 10
15 15 C 1.53776 * 113.61375 * 155.00145 * 13 12 10
16 16 C 1.53782 * 87.07827 * 89.11996 * 15 13 12
17 17 H 1.09003 * 113.61194 * 270.87706 * 16 15 13
18 18 C 1.53002 * 113.61504 * 140.06716 * 16 15 13
19 19 F 1.39901 * 109.47144 * 59.99273 * 18 16 15
20 20 F 1.39898 * 109.47152 * 179.97438 * 18 16 15
21 21 F 1.39904 * 109.46956 * 299.99516 * 18 16 15
22 22 C 1.53779 * 87.08606 * 25.43087 * 16 15 13
23 23 C 1.38759 * 119.88574 * 0.02562 * 7 6 5
24 24 N 1.48012 * 120.02462 * 179.97438 * 23 7 6
25 25 O 1.21796 * 119.99584 * 180.02562 * 24 23 7
26 26 O 1.21799 * 119.99783 * 0.02562 * 24 23 7
27 27 C 1.38121 * 119.94744 * 359.72772 * 23 7 6
28 28 H 0.96708 * 114.00246 * 59.99398 * 1 2 3
29 29 H 1.09004 * 109.46690 * 240.00803 * 2 1 3
30 30 H 1.48506 * 109.99834 * 60.00805 * 3 2 1
31 31 H 1.48502 * 110.00011 * 181.32069 * 3 2 1
32 32 H 1.07999 * 119.97270 * 0.02562 * 5 4 2
33 33 H 1.07996 * 120.02711 * 179.97438 * 6 5 4
34 34 H 1.09000 * 109.47122 * 299.99467 * 9 8 7
35 35 H 1.08996 * 109.47656 * 60.00126 * 9 8 7
36 36 H 0.96998 * 120.00271 * 0.02562 * 12 10 9
37 37 H 1.09000 * 113.61417 * 203.66658 * 15 13 12
38 38 H 1.08998 * 113.61625 * 334.57254 * 15 13 12
39 39 H 1.08996 * 113.61762 * 220.02558 * 22 16 15
40 40 H 1.09000 * 113.61350 * 89.11173 * 22 16 15
41 41 H 1.08002 * 119.97231 * 180.26870 * 27 23 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 8 0.0000 0.0000 0.0000
2 6 1.4290 0.0000 0.0000
3 14 2.0500 1.7565 0.0000
4 6 1.9313 -0.7105 1.2303
5 6 2.6387 -0.0113 2.1905
6 6 3.1008 -0.6605 3.3192
7 6 2.8540 -2.0149 3.4888
8 8 3.3079 -2.6559 4.5978
9 6 4.0319 -1.8728 5.5489
10 6 4.4517 -2.7462 6.7031
11 8 4.1592 -3.9231 6.7106
12 7 5.1522 -2.2193 7.7269
13 6 5.5598 -3.0682 8.8492
14 1 5.6199 -4.1233 8.5818
15 6 6.8010 -2.5499 9.5945
16 6 5.8354 -1.7477 10.4828
17 1 5.6076 -0.7550 10.0945
18 6 6.2325 -1.7308 11.9603
19 9 7.5005 -1.1553 12.0959
20 9 5.3004 -0.9807 12.6852
21 9 6.2601 -3.0408 12.4507
22 6 4.7697 -2.8024 10.1414
23 6 2.1438 -2.7144 2.5236
24 7 1.8792 -4.1598 2.7011
25 8 1.2561 -4.7734 1.8533
26 8 2.2845 -4.7355 3.6950
27 6 1.6796 -2.0597 1.3994
28 1 -0.3934 0.4418 -0.7650
29 1 1.7923 -0.5137 -0.8901
30 1 1.5616 2.4678 1.2086
31 1 3.5346 1.7703 -0.0322
32 1 2.8302 1.0433 2.0582
33 1 3.6537 -0.1139 4.0688
34 1 4.9163 -1.4493 5.0729
35 1 3.3959 -1.0673 5.9159
36 1 5.3858 -1.2779 7.7210
37 1 7.3443 -3.3275 10.1315
38 1 7.4501 -1.9256 8.9805
39 1 3.7790 -2.3820 9.9687
40 1 4.7577 -3.6490 10.8278
41 1 1.1230 -2.6028 0.6500
There are 68 doubly filled levels
RHF calculation, no. of doubly occupied orbitals= 68
No. of singly occupied orbitals= 1
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
m_22_15744634_4549638.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Thu Mar 4 2021 19:07:55
Heat of formation + Delta-G solvation = -188.557613 kcal
Electronic energy + Delta-G solvation = -34031.032380 eV
Core-core repulsion = 28468.140542 eV
Total energy + Delta-G solvation = -5562.891838 eV
No. of doubly occupied orbitals = 68
and no. of open levels = 1
Molecular weight
(most abundant/longest-lived isotopes) = 377.101 amu
Computer time = 1.26 seconds
Orbital eigenvalues (eV)
-51.11340 -48.64131 -48.60252 -43.37393 -41.92526 -41.24590 -39.89820 -39.03110
-37.64575 -37.38914 -34.71372 -33.62071 -32.44754 -30.37174 -28.62948 -27.90411
-26.97532 -26.57227 -24.55398 -23.92297 -22.85714 -22.10148 -20.88103 -20.51859
-19.86003 -19.54034 -19.37860 -19.23699 -18.83657 -18.73450 -18.47701 -18.25881
-17.66311 -17.47883 -17.01276 -16.52828 -16.00943 -15.95347 -15.85707 -15.53621
-15.42659 -15.23991 -15.05291 -14.94644 -14.80126 -14.78452 -14.51900 -14.33896
-14.26664 -14.02106 -13.84997 -13.63730 -13.60898 -13.04506 -12.75886 -12.71507
-12.43124 -12.35191 -12.32134 -12.18747 -11.98281 -11.93035 -11.66951 -11.14157
-10.97893 -10.39965 -10.30679 -9.87946 -4.88886 -1.40683 -0.36351 0.05234
0.25419 1.08004 1.27733 1.34635 1.68946 1.77557 1.89804 1.91624
2.18458 2.70267 2.78859 2.95877 2.97710 3.07140 3.25336 3.37806
3.44035 3.50405 3.52958 3.55810 3.68163 3.81187 3.92300 3.92764
3.94660 4.12989 4.23547 4.39562 4.40536 4.49463 4.56272 4.60503
4.69635 4.72767 4.83042 4.88838 4.95325 5.10818 5.35731 5.63355
6.33752 6.38028 6.86130 7.05770
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 O -0.568 6.568
2 C -0.088 4.088
3 Si 0.778 3.222
4 C -0.118 4.118
5 C -0.027 4.027
6 C -0.189 4.189
7 C 0.195 3.805
8 O -0.288 6.288
9 C 0.022 3.978
10 C 0.514 3.486
11 O -0.559 6.559
12 N -0.691 5.691
13 C 0.124 3.876
14 H 0.094 0.906
15 C -0.120 4.120
16 C -0.156 4.156
17 H 0.162 0.838
18 C 0.453 3.547
19 F -0.189 7.189
20 F -0.194 7.194
21 F -0.191 7.191
22 C -0.143 4.143
23 C -0.101 4.101
24 N 0.034 4.966
25 O -0.192 6.192
26 O -0.171 6.171
27 C 0.002 3.998
28 H 0.407 0.593
29 H 0.097 0.903
30 H -0.279 1.279
31 H -0.273 1.273
32 H 0.162 0.838
33 H 0.204 0.796
34 H 0.145 0.855
35 H 0.143 0.857
36 H 0.425 0.575
37 H 0.106 0.894
38 H 0.115 0.885
39 H 0.089 0.911
40 H 0.100 0.900
41 H 0.161 0.839
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.576 14.358 -5.010 15.622
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 O -0.378 6.378
2 C -0.196 4.196
3 Si 0.681 3.319
4 C -0.119 4.119
5 C -0.044 4.044
6 C -0.207 4.207
7 C 0.145 3.855
8 O -0.198 6.198
9 C -0.055 4.055
10 C 0.300 3.700
11 O -0.435 6.435
12 N -0.346 5.346
13 C 0.018 3.982
14 H 0.112 0.888
15 C -0.158 4.158
16 C -0.175 4.175
17 H 0.179 0.821
18 C 0.399 3.601
19 F -0.170 7.170
20 F -0.175 7.175
21 F -0.172 7.172
22 C -0.181 4.181
23 C -0.186 4.186
24 N 0.546 4.454
25 O -0.401 6.401
26 O -0.384 6.384
27 C -0.017 4.017
28 H 0.259 0.741
29 H 0.115 0.885
30 H -0.205 1.205
31 H -0.199 1.199
32 H 0.179 0.821
33 H 0.221 0.779
34 H 0.162 0.838
35 H 0.160 0.840
36 H 0.264 0.736
37 H 0.124 0.876
38 H 0.133 0.867
39 H 0.108 0.892
40 H 0.118 0.882
41 H 0.179 0.821
Dipole moment (debyes) X Y Z Total
from point charges 4.042 14.223 -4.030 15.326
hybrid contribution -0.082 -1.073 0.820 1.353
sum 3.960 13.150 -3.210 14.104
Atomic orbital electron populations
1.86448 1.17096 1.82696 1.51589 1.25018 0.86221 1.12368 0.96018
0.93411 0.78071 0.74396 0.86058 1.19675 1.01577 0.92039 0.98593
1.21522 0.91262 1.00649 0.91004 1.21692 1.06476 0.90440 1.02138
1.18832 0.89838 0.91732 0.85073 1.86469 1.67409 1.37675 1.28200
1.23142 1.00159 0.93869 0.88300 1.20398 0.77983 0.87971 0.83640
1.90866 1.54782 1.18712 1.79145 1.45253 1.55922 1.14139 1.19273
1.21658 0.95160 0.96285 0.85055 0.88762 1.23341 0.95792 1.00007
0.96680 1.24231 1.01103 1.04898 0.87225 0.82072 1.20850 0.74354
0.72850 0.92031 1.93187 1.42131 1.84835 1.96865 1.93183 1.66129
1.76994 1.81199 1.93160 1.96221 1.37791 1.90063 1.23529 0.98535
0.98408 0.97649 1.20873 1.15284 0.80191 1.02260 1.43789 0.98065
1.03955 0.99610 1.94499 1.39844 1.67655 1.38136 1.94680 1.53760
1.70626 1.19377 1.20905 0.92666 0.94745 0.93421 0.74094 0.88532
1.20537 1.19921 0.82069 0.77902 0.83757 0.83994 0.73643 0.87567
0.86709 0.89196 0.88152 0.82114
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 O -0.57 2.67 12.81 -148.98 -1.91 0.77 16
2 C -0.09 0.58 2.79 71.23 0.20 0.78 16
3 Si 0.78 -8.07 29.85 68.60 2.05 -6.03 16
4 C -0.12 0.18 5.39 -19.85 -0.11 0.07 16
5 C -0.03 0.14 8.66 22.26 0.19 0.34 16
6 C -0.19 1.27 9.04 22.37 0.20 1.47 16
7 C 0.20 0.49 6.67 22.51 0.15 0.64 16
8 O -0.29 -1.40 7.68 -63.35 -0.49 -1.89 16
9 C 0.02 -0.17 5.22 71.24 0.37 0.20 16
10 C 0.51 -0.37 7.91 87.66 0.69 0.32 16
11 O -0.56 -7.31 16.10 16.02 0.26 -7.06 16
12 N -0.69 6.21 5.26 -440.02 -2.32 3.89 16
13 C 0.12 -0.70 4.32 45.52 0.20 -0.51 16
14 H 0.09 0.02 7.46 -2.38 -0.02 0.01 16
15 C -0.12 1.15 7.18 31.12 0.22 1.37 16
16 C -0.16 1.34 3.68 -10.27 -0.04 1.30 16
17 H 0.16 -2.32 8.14 -2.39 -0.02 -2.34 16
18 C 0.45 -0.76 3.02 71.98 0.22 -0.54 16
19 F -0.19 -0.06 17.18 44.97 0.77 0.72 16
20 F -0.19 -0.31 17.32 44.97 0.78 0.47 16
21 F -0.19 -0.32 15.76 44.97 0.71 0.39 16
22 C -0.14 0.80 7.32 31.12 0.23 1.02 16
23 C -0.10 -0.85 6.87 36.47 0.25 -0.60 16
24 N 0.03 0.57 4.45 -46.23 -0.21 0.36 16
25 O -0.19 -3.47 18.45 18.89 0.35 -3.12 16
26 O -0.17 -3.65 17.24 25.61 0.44 -3.21 16
27 C 0.00 0.01 9.18 22.25 0.20 0.21 16
28 H 0.41 -6.05 8.74 -74.05 -0.65 -6.70 16
29 H 0.10 -0.94 7.96 -2.38 -0.02 -0.96 16
30 H -0.28 1.42 7.05 99.48 0.70 2.12 16
31 H -0.27 1.79 7.11 99.48 0.71 2.50 16
32 H 0.16 -1.55 4.86 -2.91 -0.01 -1.57 16
33 H 0.20 -3.47 6.30 -2.91 -0.02 -3.49 16
34 H 0.14 -2.34 7.66 -2.39 -0.02 -2.36 16
35 H 0.14 -2.24 7.66 -2.39 -0.02 -2.26 16
36 H 0.42 -7.59 8.70 -92.71 -0.81 -8.40 16
37 H 0.11 -0.84 7.88 -2.39 -0.02 -0.86 16
38 H 0.11 -1.56 8.14 -2.39 -0.02 -1.58 16
39 H 0.09 -0.49 8.14 -2.39 -0.02 -0.51 16
40 H 0.10 -0.33 7.14 -2.39 -0.02 -0.35 16
41 H 0.16 0.59 7.61 -2.91 -0.02 0.57 16
Total: 0.00 -37.96 369.91 3.16 -34.80
By element:
Atomic # 1 Polarization: -25.91 SS G_CDS: -0.27 Total: -26.18 kcal
Atomic # 6 Polarization: 3.10 SS G_CDS: 2.98 Total: 6.09 kcal
Atomic # 7 Polarization: 6.78 SS G_CDS: -2.52 Total: 4.26 kcal
Atomic # 8 Polarization: -13.16 SS G_CDS: -1.35 Total: -14.51 kcal
Atomic # 9 Polarization: -0.69 SS G_CDS: 2.26 Total: 1.57 kcal
Atomic # 14 Polarization: -8.07 SS G_CDS: 2.05 Total: -6.03 kcal
Total: -37.96 3.16 -34.80 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
m_22_15744634_4549638.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -153.755 kcal
(2) G-P(sol) polarization free energy of solvation -37.957 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.713 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.155 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.802 kcal
(6) G-S(sol) free energy of system = (1) + (5) -188.558 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.26 seconds