Wall clock time and date at job start Thu Mar 4 2021 13:17:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86292 * 1 3 3 C 1.86300 * 110.07622 * 2 1 4 4 C 1.87460 * 110.01601 * 238.60304 * 2 1 3 5 5 C 1.53648 * 107.32844 * 194.01751 * 4 2 1 6 6 C 1.52510 * 110.12207 * 60.33810 * 5 4 2 7 7 N 1.46342 * 111.68877 * 288.73562 * 6 5 4 8 8 C 1.34771 * 120.53422 * 251.16669 * 7 6 5 9 9 O 1.21693 * 120.00316 * 179.25765 * 8 7 6 10 10 C 1.46683 * 120.00012 * 359.25415 * 8 7 6 11 11 C 1.37866 * 126.23473 * 207.21285 * 10 8 7 12 12 C 1.39836 * 107.08225 * 179.84805 * 11 10 8 13 13 C 1.50703 * 126.06513 * 180.13662 * 12 11 10 14 14 O 1.42903 * 109.47231 * 300.29995 * 13 12 11 15 15 Si 1.86300 * 109.47017 * 180.30076 * 13 12 11 16 16 H 1.48504 * 109.46880 * 179.97438 * 15 13 12 17 17 H 1.48498 * 109.47207 * 299.99973 * 15 13 12 18 18 H 1.48496 * 109.47194 * 60.00312 * 15 13 12 19 19 C 1.35443 * 107.86840 * 0.41426 * 12 11 10 20 20 N 1.35533 * 108.87249 * 359.73986 * 19 12 11 21 21 C 1.47798 * 118.93593 * 70.89712 * 7 6 5 22 22 H 1.08996 * 109.47196 * 298.60181 * 1 2 3 23 23 H 1.09001 * 109.47132 * 58.60437 * 1 2 3 24 24 H 1.09000 * 109.47249 * 178.60270 * 1 2 3 25 25 H 1.09004 * 109.46943 * 181.39659 * 3 2 1 26 26 H 1.08993 * 109.47023 * 301.39268 * 3 2 1 27 27 H 1.08994 * 109.46851 * 61.39919 * 3 2 1 28 28 H 1.08999 * 109.88729 * 313.47602 * 4 2 1 29 29 H 1.09005 * 109.88827 * 74.48950 * 4 2 1 30 30 H 1.08995 * 109.36158 * 180.53950 * 5 4 2 31 31 H 1.09004 * 109.35849 * 300.14375 * 5 4 2 32 32 H 1.08998 * 109.03612 * 168.16549 * 6 5 4 33 33 H 1.09006 * 109.03328 * 49.30451 * 6 5 4 34 34 H 1.07998 * 126.45649 * 359.95664 * 11 10 8 35 35 H 1.09000 * 109.47249 * 60.30362 * 13 12 11 36 36 H 0.96698 * 113.99753 * 179.97438 * 14 13 12 37 37 H 1.08003 * 125.56916 * 179.70970 * 19 12 11 38 38 H 0.97001 * 125.68054 * 179.97438 * 20 19 12 39 39 H 1.09001 * 110.07937 * 64.45308 * 21 7 6 40 40 H 1.08991 * 110.07842 * 186.06171 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8629 0.0000 0.0000 3 6 2.5024 1.7498 0.0000 4 6 2.5046 -0.9176 -1.5035 5 6 3.9983 -1.1911 -1.2696 6 6 4.1861 -2.0448 -0.0199 7 7 3.9033 -1.2873 1.1999 8 6 4.9027 -0.9273 2.0294 9 8 4.6582 -0.2858 3.0343 10 6 6.2851 -1.3086 1.7211 11 6 7.3007 -1.4991 2.6337 12 6 8.4426 -1.8548 1.9092 13 6 9.7996 -2.1641 2.4873 14 8 10.2810 -1.0275 3.2073 15 14 10.9836 -2.5728 1.1083 16 1 12.3209 -2.8770 1.6779 17 1 10.4834 -3.7540 0.3601 18 1 11.0906 -1.4126 0.1876 19 6 8.1143 -1.8660 0.5952 20 7 6.8061 -1.5358 0.4674 21 6 2.5050 -0.9183 1.5046 22 1 -0.3633 0.4919 0.9022 23 1 -0.3633 0.5354 -0.8772 24 1 -0.3634 -1.0274 -0.0251 25 1 3.5921 1.7384 -0.0250 26 1 2.1244 2.2748 -0.8772 27 1 2.1651 2.2598 0.9022 28 1 1.9688 -1.8598 -1.6194 29 1 2.3739 -0.3049 -2.3955 30 1 4.4086 -1.7172 -2.1316 31 1 4.5235 -0.2444 -1.1428 32 1 5.2148 -2.4032 0.0146 33 1 3.5139 -2.9015 -0.0703 34 1 7.2277 -1.3951 3.7062 35 1 9.7211 -3.0158 3.1631 36 1 11.1518 -1.1556 3.6078 37 1 8.7856 -2.0993 -0.2181 38 1 6.3182 -1.4702 -0.3684 39 1 1.9104 -1.8153 1.6775 40 1 2.4712 -0.2708 2.3807 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_15766672_10543058.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 13:17:07 Heat of formation + Delta-G solvation = -40.862942 kcal Electronic energy + Delta-G solvation = -20766.096227 eV Core-core repulsion = 17705.800592 eV Total energy + Delta-G solvation = -3060.295635 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.131 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.73766 -40.38269 -37.79019 -37.50545 -33.45519 -32.87503 -31.00647 -29.44433 -28.45785 -28.21122 -26.88221 -26.10605 -23.38595 -22.49157 -21.08014 -20.49292 -18.89838 -18.37714 -17.63911 -16.94488 -16.66116 -15.87097 -15.62769 -15.30360 -14.97151 -14.79827 -14.65956 -14.37182 -14.29127 -14.13492 -13.96053 -13.81829 -13.53248 -13.38715 -13.25703 -13.15198 -13.05132 -12.46871 -12.18931 -12.14370 -12.02142 -11.82130 -11.64896 -11.19471 -10.85919 -10.41140 -10.29629 -9.90734 -9.55715 -9.18596 0.35904 1.24615 1.42133 1.55681 1.56505 1.65791 1.69698 1.85139 1.92802 2.00694 2.03597 2.31564 2.52968 3.43692 3.67431 3.74275 3.96987 4.02646 4.10630 4.26123 4.34937 4.43264 4.56621 4.65697 4.66523 4.69884 4.74481 4.80852 4.83039 4.86301 4.93867 4.96346 4.99814 5.18483 5.30989 5.43493 5.52909 5.56302 5.60859 5.70790 6.17713 6.34832 6.93502 6.96217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.454 4.454 2 Si 1.067 2.933 3 C -0.468 4.468 4 C -0.397 4.397 5 C -0.138 4.138 6 C 0.067 3.933 7 N -0.588 5.588 8 C 0.576 3.424 9 O -0.579 6.579 10 C -0.065 4.065 11 C -0.106 4.106 12 C -0.183 4.183 13 C -0.061 4.061 14 O -0.571 6.571 15 Si 0.991 3.009 16 H -0.261 1.261 17 H -0.243 1.243 18 H -0.264 1.264 19 C 0.033 3.967 20 N -0.523 5.523 21 C -0.208 4.208 22 H 0.065 0.935 23 H 0.078 0.922 24 H 0.080 0.920 25 H 0.053 0.947 26 H 0.079 0.921 27 H 0.057 0.943 28 H 0.097 0.903 29 H 0.092 0.908 30 H 0.108 0.892 31 H 0.063 0.937 32 H 0.094 0.906 33 H 0.103 0.897 34 H 0.129 0.871 35 H 0.081 0.919 36 H 0.394 0.606 37 H 0.204 0.796 38 H 0.436 0.564 39 H 0.088 0.912 40 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.025 -4.735 -8.171 9.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.562 4.562 2 Si 1.257 2.743 3 C -0.573 4.573 4 C -0.485 4.485 5 C -0.176 4.176 6 C -0.056 4.056 7 N -0.320 5.320 8 C 0.366 3.634 9 O -0.459 6.459 10 C -0.177 4.177 11 C -0.133 4.133 12 C -0.190 4.190 13 C -0.171 4.171 14 O -0.380 6.380 15 Si 0.813 3.187 16 H -0.185 1.185 17 H -0.167 1.167 18 H -0.188 1.188 19 C -0.103 4.103 20 N -0.126 5.126 21 C -0.373 4.373 22 H 0.084 0.916 23 H 0.097 0.903 24 H 0.099 0.901 25 H 0.072 0.928 26 H 0.098 0.902 27 H 0.076 0.924 28 H 0.115 0.885 29 H 0.111 0.889 30 H 0.127 0.873 31 H 0.082 0.918 32 H 0.112 0.888 33 H 0.121 0.879 34 H 0.147 0.853 35 H 0.098 0.902 36 H 0.244 0.756 37 H 0.221 0.779 38 H 0.283 0.717 39 H 0.107 0.893 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -0.301 -4.334 -8.603 9.638 hybrid contribution 0.040 0.235 1.059 1.085 sum -0.261 -4.099 -7.544 8.590 Atomic orbital electron populations 1.26120 1.19936 1.05329 1.04828 0.78786 0.66143 0.64700 0.64629 1.26390 1.05589 1.21034 1.04324 1.26108 0.99395 1.09267 1.13757 1.21729 0.98246 1.00474 0.97199 1.22287 1.04283 0.95732 0.83258 1.47889 1.06448 1.54933 1.22682 1.17463 0.83984 0.79158 0.82835 1.90806 1.84141 1.41954 1.28983 1.20157 0.94175 1.17374 0.86040 1.21199 0.91406 1.01805 0.98856 1.19073 0.95194 1.11662 0.93038 1.24345 0.97110 0.91310 1.04291 1.86489 1.40369 1.38283 1.72832 0.85166 0.76997 0.79725 0.76860 1.18513 1.16655 1.18848 1.22278 0.85887 1.04043 0.98130 1.42640 1.09864 1.52368 1.07718 1.27403 0.84218 1.08345 1.17286 0.91577 0.90263 0.90111 0.92800 0.90210 0.92390 0.88472 0.88894 0.87343 0.91835 0.88794 0.87928 0.85277 0.90156 0.75638 0.77911 0.71720 0.89323 0.90592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 2.41 8.65 113.37 0.98 3.39 16 2 Si 1.07 -6.15 11.99 68.60 0.82 -5.32 16 3 C -0.47 -0.01 8.65 113.37 0.98 0.98 16 4 C -0.40 3.72 5.03 72.20 0.36 4.09 16 5 C -0.14 1.26 4.89 30.65 0.15 1.41 16 6 C 0.07 -0.37 5.17 86.25 0.45 0.07 16 7 N -0.59 -1.65 2.63 -630.20 -1.66 -3.30 16 8 C 0.58 6.41 7.63 86.45 0.66 7.07 16 9 O -0.58 -11.81 16.42 -4.33 -0.07 -11.88 16 10 C -0.06 -0.51 6.38 40.35 0.26 -0.25 16 11 C -0.11 -1.10 10.69 22.57 0.24 -0.85 16 12 C -0.18 -0.90 5.47 -20.12 -0.11 -1.01 16 13 C -0.06 -0.06 3.01 71.24 0.21 0.16 16 14 O -0.57 -2.18 12.86 -148.98 -1.92 -4.10 16 15 Si 0.99 -3.20 25.87 68.60 1.77 -1.43 16 16 H -0.26 0.61 7.11 99.48 0.71 1.32 16 17 H -0.24 1.10 7.11 99.48 0.71 1.80 16 18 H -0.26 0.20 7.11 99.48 0.71 0.91 16 19 C 0.03 -0.02 10.45 83.48 0.87 0.85 16 20 N -0.52 0.24 4.75 -183.62 -0.87 -0.63 16 21 C -0.21 -0.25 5.44 127.52 0.69 0.44 16 22 H 0.07 -0.23 7.96 -2.39 -0.02 -0.25 16 23 H 0.08 -0.47 7.96 -2.39 -0.02 -0.49 16 24 H 0.08 -0.53 7.96 -2.39 -0.02 -0.55 16 25 H 0.05 0.14 7.96 -2.38 -0.02 0.12 16 26 H 0.08 -0.17 7.96 -2.39 -0.02 -0.19 16 27 H 0.06 0.16 7.96 -2.39 -0.02 0.14 16 28 H 0.10 -1.11 7.99 -2.39 -0.02 -1.13 16 29 H 0.09 -0.96 7.99 -2.38 -0.02 -0.98 16 30 H 0.11 -1.47 8.14 -2.39 -0.02 -1.49 16 31 H 0.06 -0.48 7.84 -2.38 -0.02 -0.50 16 32 H 0.09 -0.62 4.02 -2.39 -0.01 -0.63 16 33 H 0.10 -0.87 8.11 -2.38 -0.02 -0.89 16 34 H 0.13 1.70 8.06 -2.91 -0.02 1.68 16 35 H 0.08 -0.13 7.96 -2.39 -0.02 -0.15 16 36 H 0.39 -2.23 8.74 -74.06 -0.65 -2.88 16 37 H 0.20 -1.60 6.19 -2.91 -0.02 -1.61 16 38 H 0.44 -3.04 5.65 -92.71 -0.52 -3.56 16 39 H 0.09 -0.15 8.00 -2.39 -0.02 -0.17 16 40 H 0.08 0.54 6.90 -2.39 -0.02 0.52 16 Total: 0.00 -23.78 320.64 4.47 -19.32 By element: Atomic # 1 Polarization: -9.62 SS G_CDS: 0.63 Total: -8.99 kcal Atomic # 6 Polarization: 10.60 SS G_CDS: 5.75 Total: 16.34 kcal Atomic # 7 Polarization: -1.41 SS G_CDS: -2.53 Total: -3.94 kcal Atomic # 8 Polarization: -14.00 SS G_CDS: -1.99 Total: -15.98 kcal Atomic # 14 Polarization: -9.35 SS G_CDS: 2.60 Total: -6.75 kcal Total: -23.78 4.47 -19.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_15766672_10543058.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.547 kcal (2) G-P(sol) polarization free energy of solvation -23.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds