Wall clock time and date at job start Thu Mar 4 2021 13:17:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.35532 * 125.67228 * 2 1 4 4 C 1.35455 * 108.87238 * 179.97438 * 3 2 1 5 5 C 1.50693 * 126.07168 * 180.02562 * 4 3 2 6 6 O 1.42902 * 109.47298 * 244.97896 * 5 4 3 7 7 Si 1.86306 * 109.47093 * 4.97338 * 5 4 3 8 8 H 1.48507 * 109.46757 * 60.00212 * 7 5 4 9 9 H 1.48500 * 109.47113 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.47256 * 300.00347 * 7 5 4 11 11 C 1.39832 * 107.85958 * 0.02562 * 4 3 2 12 12 C 1.37646 * 125.68032 * 179.97438 * 2 1 3 13 13 C 1.46671 * 126.23353 * 0.02562 * 12 2 1 14 14 O 1.21693 * 120.00587 * 23.97204 * 13 12 2 15 15 N 1.34778 * 120.00015 * 203.96594 * 13 12 2 16 16 C 1.46341 * 120.53358 * 6.63093 * 15 13 12 17 17 C 1.52003 * 111.97438 * 250.94229 * 16 15 13 18 18 C 1.53649 * 110.16547 * 288.86950 * 17 16 15 19 19 Si 1.87458 * 107.32361 * 60.23905 * 18 17 16 20 20 C 1.86301 * 110.01597 * 194.01977 * 19 18 17 21 21 C 1.86300 * 110.01328 * 72.58547 * 19 18 17 22 22 C 1.47790 * 120.53592 * 186.90273 * 15 13 12 23 23 H 1.09000 * 109.47136 * 95.34475 * 1 2 3 24 24 H 1.09008 * 109.46589 * 215.33946 * 1 2 3 25 25 H 1.09001 * 109.47341 * 335.33844 * 1 2 3 26 26 H 1.08001 * 125.56437 * 0.24664 * 3 2 1 27 27 H 1.08997 * 109.47448 * 124.97306 * 5 4 3 28 28 H 0.96702 * 114.00248 * 59.99527 * 6 5 4 29 29 H 1.08001 * 126.45412 * 179.97438 * 11 4 3 30 30 H 1.09007 * 109.03409 * 11.48059 * 16 15 13 31 31 H 1.09004 * 109.03965 * 130.33795 * 16 15 13 32 32 H 1.09008 * 109.42554 * 168.60812 * 17 16 15 33 33 H 1.09002 * 109.26267 * 49.03322 * 17 16 15 34 34 H 1.09000 * 109.88524 * 300.78330 * 18 17 16 35 35 H 1.08999 * 109.88810 * 179.69589 * 18 17 16 36 36 H 1.08999 * 109.47161 * 177.21069 * 20 19 18 37 37 H 1.09001 * 109.46688 * 297.20706 * 20 19 18 38 38 H 1.08999 * 109.46774 * 57.20979 * 20 19 18 39 39 H 1.09001 * 109.47240 * 302.79006 * 21 19 18 40 40 H 1.08995 * 109.47092 * 62.79671 * 21 19 18 41 41 H 1.09004 * 109.47020 * 182.78844 * 21 19 18 42 42 H 1.08999 * 110.08757 * 244.44337 * 22 15 13 43 43 H 1.09008 * 110.07952 * 6.04932 * 22 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2554 1.1010 0.0000 4 6 3.5521 0.7095 0.0006 5 6 4.7536 1.6191 0.0013 6 8 5.4780 1.4525 -1.2192 7 14 4.1924 3.3891 0.1536 8 1 3.4396 3.5622 1.4220 9 1 5.3764 4.2854 0.1550 10 1 3.3138 3.7303 -0.9939 11 6 3.5780 -0.6886 0.0004 12 6 2.2679 -1.1181 0.0005 13 6 1.8126 -2.5123 0.0006 14 8 0.7084 -2.7920 -0.4279 15 7 2.6171 -3.4839 0.4752 16 6 3.8849 -3.1484 1.1244 17 6 5.0811 -3.5277 0.2666 18 6 5.2377 -5.0555 0.2221 19 14 3.6665 -5.7563 -0.5224 20 6 3.5868 -7.5944 -0.2296 21 6 3.6112 -5.3967 -2.3495 22 6 2.2359 -4.9057 0.3430 23 1 -0.3633 -0.0957 -1.0232 24 1 -0.3633 -0.8384 0.5945 25 1 -0.3634 0.9339 0.4288 26 1 1.9080 2.1236 0.0038 27 1 5.3984 1.3687 0.8436 28 1 4.9647 1.6584 -2.0125 29 1 4.4584 -1.3141 0.0003 30 1 3.9137 -2.0754 1.3148 31 1 3.9491 -3.6786 2.0746 32 1 5.9838 -3.0840 0.6868 33 1 4.9323 -3.1500 -0.7450 34 1 5.3750 -5.4437 1.2313 35 1 6.0932 -5.3226 -0.3983 36 1 2.6477 -7.9845 -0.6220 37 1 4.4215 -8.0794 -0.7359 38 1 3.6448 -7.7947 0.8402 39 1 3.6833 -4.3211 -2.5105 40 1 4.4456 -5.8948 -2.8432 41 1 2.6723 -5.7640 -2.7638 42 1 2.0802 -5.3447 1.3284 43 1 1.3294 -4.9960 -0.2556 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_15766672_10803934.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 13:17:16 Heat of formation + Delta-G solvation = -39.253250 kcal Electronic energy + Delta-G solvation = -23080.383839 eV Core-core repulsion = 19864.620387 eV Total energy + Delta-G solvation = -3215.763453 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 296.147 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.71119 -40.38056 -37.80990 -37.50014 -33.96090 -33.37202 -31.42231 -29.36317 -28.55439 -28.41171 -27.48394 -26.92926 -25.43567 -23.19370 -22.38554 -21.11867 -19.74846 -18.54960 -17.92393 -17.16387 -16.80921 -16.66396 -16.12404 -15.80553 -15.61057 -15.45507 -14.83017 -14.65354 -14.44870 -14.31686 -14.14109 -13.87898 -13.85471 -13.47025 -13.43129 -13.27512 -13.21780 -13.17955 -13.10297 -12.84924 -12.31758 -12.09054 -12.03236 -11.98543 -11.68469 -11.56693 -11.09344 -10.82154 -10.34510 -10.24735 -9.68348 -9.49969 -9.14010 0.39946 1.30034 1.43849 1.46175 1.56146 1.60934 1.68863 1.88010 1.92977 2.01489 2.19350 2.28866 2.56663 3.46040 3.72019 3.77542 3.94581 3.99428 4.15104 4.21145 4.26775 4.35019 4.47623 4.53228 4.59077 4.68155 4.70803 4.73418 4.78002 4.82732 4.83567 4.85302 4.91557 4.95355 5.05977 5.15826 5.32413 5.39762 5.48737 5.59530 5.62861 5.68652 5.85689 6.11192 6.27910 6.84227 7.03434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.415 5.415 3 C 0.020 3.980 4 C -0.215 4.215 5 C -0.042 4.042 6 O -0.556 6.556 7 Si 0.979 3.021 8 H -0.256 1.256 9 H -0.276 1.276 10 H -0.254 1.254 11 C -0.120 4.120 12 C -0.075 4.075 13 C 0.573 3.427 14 O -0.590 6.590 15 N -0.579 5.579 16 C 0.070 3.930 17 C -0.131 4.131 18 C -0.401 4.401 19 Si 1.064 2.936 20 C -0.452 4.452 21 C -0.465 4.465 22 C -0.202 4.202 23 H 0.078 0.922 24 H 0.074 0.926 25 H 0.116 0.884 26 H 0.190 0.810 27 H 0.123 0.877 28 H 0.385 0.615 29 H 0.171 0.829 30 H 0.108 0.892 31 H 0.092 0.908 32 H 0.097 0.903 33 H 0.063 0.937 34 H 0.093 0.907 35 H 0.088 0.912 36 H 0.067 0.933 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.054 0.946 40 H 0.078 0.922 41 H 0.059 0.941 42 H 0.086 0.914 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.817 0.437 2.373 3.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.088 5.088 3 C -0.117 4.117 4 C -0.221 4.221 5 C -0.153 4.153 6 O -0.363 6.363 7 Si 0.804 3.196 8 H -0.180 1.180 9 H -0.201 1.201 10 H -0.178 1.178 11 C -0.146 4.146 12 C -0.188 4.188 13 C 0.363 3.637 14 O -0.473 6.473 15 N -0.309 5.309 16 C -0.052 4.052 17 C -0.169 4.169 18 C -0.489 4.489 19 Si 1.254 2.746 20 C -0.561 4.561 21 C -0.571 4.571 22 C -0.367 4.367 23 H 0.097 0.903 24 H 0.093 0.907 25 H 0.135 0.865 26 H 0.207 0.793 27 H 0.141 0.859 28 H 0.234 0.766 29 H 0.188 0.812 30 H 0.125 0.875 31 H 0.110 0.890 32 H 0.115 0.885 33 H 0.081 0.919 34 H 0.111 0.889 35 H 0.107 0.893 36 H 0.086 0.914 37 H 0.097 0.903 38 H 0.098 0.902 39 H 0.073 0.927 40 H 0.097 0.903 41 H 0.078 0.922 42 H 0.105 0.895 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 1.972 0.946 2.656 3.441 hybrid contribution -0.922 -0.275 -0.585 1.126 sum 1.050 0.672 2.071 2.417 Atomic orbital electron populations 1.22278 0.75125 1.05355 1.04294 1.44009 1.07499 1.04901 1.52349 1.22279 0.90290 0.92224 1.06878 1.20010 0.94139 0.94961 1.13020 1.24335 0.93298 1.07320 0.90358 1.86462 1.41871 1.92036 1.15883 0.85312 0.79090 0.74351 0.80888 1.17985 1.20117 1.17751 1.21819 0.94582 0.95042 1.03139 1.20145 0.91306 0.87357 1.20005 1.17390 0.83842 0.84466 0.77957 1.90765 1.22055 1.84046 1.50469 1.47624 1.20567 1.05478 1.57242 1.22211 0.81711 1.04469 0.96774 1.21521 0.97971 0.96961 1.00480 1.26186 1.14859 0.99625 1.08196 0.78835 0.65085 0.65806 0.64863 1.26106 1.04846 1.19436 1.05692 1.26348 1.04292 1.04248 1.22201 1.27347 1.15244 0.85099 1.08976 0.90340 0.90709 0.86513 0.79316 0.85932 0.76604 0.81176 0.87463 0.89020 0.88469 0.91867 0.88859 0.89318 0.91423 0.90304 0.90191 0.92663 0.90285 0.92201 0.89533 0.90466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.08 10.29 127.77 1.32 1.39 16 2 N -0.42 -1.81 3.16 -534.30 -1.69 -3.50 16 3 C 0.02 0.01 9.93 83.48 0.83 0.84 16 4 C -0.21 -0.19 5.43 -20.12 -0.11 -0.30 16 5 C -0.04 0.08 3.02 71.23 0.22 0.30 16 6 O -0.56 -0.07 12.88 -148.98 -1.92 -1.99 16 7 Si 0.98 -2.66 25.89 68.60 1.78 -0.89 16 8 H -0.26 0.52 7.11 99.48 0.71 1.23 16 9 H -0.28 -0.34 7.11 99.48 0.71 0.37 16 10 H -0.25 0.71 7.11 99.48 0.71 1.42 16 11 C -0.12 -0.33 8.40 22.57 0.19 -0.15 16 12 C -0.08 -0.51 6.43 40.35 0.26 -0.25 16 13 C 0.57 5.73 7.49 86.44 0.65 6.37 16 14 O -0.59 -9.95 14.97 -4.32 -0.06 -10.01 16 15 N -0.58 -2.16 2.64 -631.10 -1.66 -3.82 16 16 C 0.07 -0.16 5.02 86.08 0.43 0.27 16 17 C -0.13 0.63 4.52 30.48 0.14 0.77 16 18 C -0.40 2.57 5.03 72.20 0.36 2.93 16 19 Si 1.06 -4.84 11.99 68.60 0.82 -4.02 16 20 C -0.45 2.07 8.65 113.37 0.98 3.05 16 21 C -0.47 -0.24 8.65 113.37 0.98 0.74 16 22 C -0.20 -0.32 5.42 127.52 0.69 0.37 16 23 H 0.08 0.13 8.14 -2.39 -0.02 0.11 16 24 H 0.07 0.34 7.32 -2.38 -0.02 0.32 16 25 H 0.12 -0.66 8.12 -2.39 -0.02 -0.68 16 26 H 0.19 -0.94 6.21 -2.91 -0.02 -0.96 16 27 H 0.12 -0.48 7.96 -2.39 -0.02 -0.50 16 28 H 0.39 -2.07 8.70 -74.06 -0.64 -2.71 16 29 H 0.17 -0.09 4.48 -2.91 -0.01 -0.10 16 30 H 0.11 -0.22 4.21 -2.38 -0.01 -0.23 16 31 H 0.09 -0.48 8.10 -2.38 -0.02 -0.50 16 32 H 0.10 -0.71 8.14 -2.38 -0.02 -0.73 16 33 H 0.06 -0.17 7.37 -2.39 -0.02 -0.19 16 34 H 0.09 -0.78 7.99 -2.39 -0.02 -0.80 16 35 H 0.09 -0.63 7.99 -2.39 -0.02 -0.65 16 36 H 0.07 -0.22 7.96 -2.39 -0.02 -0.24 16 37 H 0.08 -0.40 7.96 -2.39 -0.02 -0.42 16 38 H 0.08 -0.46 7.96 -2.39 -0.02 -0.47 16 39 H 0.05 0.18 7.96 -2.39 -0.02 0.16 16 40 H 0.08 -0.10 7.96 -2.39 -0.02 -0.12 16 41 H 0.06 0.14 7.96 -2.38 -0.02 0.12 16 42 H 0.09 -0.09 8.00 -2.39 -0.02 -0.11 16 43 H 0.08 0.50 6.95 -2.38 -0.02 0.48 16 Total: 0.00 -18.40 338.58 5.31 -13.09 By element: Atomic # 1 Polarization: -6.32 SS G_CDS: 1.12 Total: -5.20 kcal Atomic # 6 Polarization: 9.40 SS G_CDS: 6.93 Total: 16.33 kcal Atomic # 7 Polarization: -3.97 SS G_CDS: -3.35 Total: -7.32 kcal Atomic # 8 Polarization: -10.01 SS G_CDS: -1.98 Total: -12.00 kcal Atomic # 14 Polarization: -7.50 SS G_CDS: 2.60 Total: -4.90 kcal Total: -18.40 5.31 -13.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_15766672_10803934.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.164 kcal (2) G-P(sol) polarization free energy of solvation -18.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds