Wall clock time and date at job start Thu Mar 4 2021 13:24:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86301 * 1 3 3 C 1.86300 * 110.07487 * 2 1 4 4 C 1.87457 * 110.01522 * 238.60009 * 2 1 3 5 5 C 1.53648 * 107.32104 * 194.01860 * 4 2 1 6 6 C 1.52015 * 110.16714 * 60.24108 * 5 4 2 7 7 N 1.46341 * 111.96995 * 288.87404 * 6 5 4 8 8 C 1.34774 * 120.52574 * 250.94042 * 7 6 5 9 9 O 1.21289 * 119.99362 * 179.72852 * 8 7 6 10 10 C 1.50697 * 120.00735 * 359.71966 * 8 7 6 11 11 C 1.50698 * 109.47556 * 179.97438 * 10 8 7 12 12 C 1.38228 * 120.00200 * 270.28677 * 11 10 8 13 13 C 1.38238 * 120.00120 * 180.23540 * 12 11 10 14 14 C 1.38234 * 119.99675 * 359.47825 * 13 12 11 15 15 C 1.50703 * 120.00257 * 180.27927 * 14 13 12 16 16 O 1.42908 * 109.46633 * 65.00233 * 15 14 13 17 17 Si 1.86297 * 109.47442 * 185.00250 * 15 14 13 18 18 H 1.48499 * 109.47302 * 300.00318 * 17 15 14 19 19 H 1.48503 * 109.47012 * 60.00177 * 17 15 14 20 20 H 1.48496 * 109.47110 * 180.02562 * 17 15 14 21 21 C 1.38234 * 120.00240 * 0.26327 * 14 13 12 22 22 C 1.38234 * 119.99739 * 90.00042 * 11 10 8 23 23 C 1.47785 * 118.93642 * 70.67002 * 7 6 5 24 24 H 1.08997 * 109.47508 * 298.60783 * 1 2 3 25 25 H 1.09004 * 109.46771 * 58.60979 * 1 2 3 26 26 H 1.09005 * 109.47547 * 178.60347 * 1 2 3 27 27 H 1.08995 * 109.46978 * 181.39431 * 3 2 1 28 28 H 1.09000 * 109.46729 * 301.39224 * 3 2 1 29 29 H 1.08994 * 109.47062 * 61.38923 * 3 2 1 30 30 H 1.08998 * 109.88995 * 313.47104 * 4 2 1 31 31 H 1.08995 * 109.88705 * 74.48902 * 4 2 1 32 32 H 1.08999 * 109.36237 * 180.53926 * 5 4 2 33 33 H 1.08997 * 109.36465 * 300.27119 * 5 4 2 34 34 H 1.09002 * 108.87060 * 168.23132 * 6 5 4 35 35 H 1.09004 * 108.91143 * 49.54034 * 6 5 4 36 36 H 1.09007 * 109.46721 * 60.00010 * 10 8 7 37 37 H 1.08993 * 109.47200 * 300.00335 * 10 8 7 38 38 H 1.08004 * 120.00256 * 359.97438 * 12 11 10 39 39 H 1.08002 * 120.00519 * 179.76445 * 13 12 11 40 40 H 1.09000 * 109.46946 * 305.01070 * 15 14 13 41 41 H 0.96707 * 113.99859 * 180.02562 * 16 15 14 42 42 H 1.07997 * 120.00460 * 180.02562 * 21 14 13 43 43 H 1.08001 * 120.00310 * 0.02562 * 22 11 10 44 44 H 1.09003 * 110.08466 * 64.70662 * 23 7 6 45 45 H 1.09000 * 110.08258 * 186.20372 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.5025 1.7498 0.0000 4 6 2.5046 -0.9177 -1.5034 5 6 3.9984 -1.1911 -1.2694 6 6 4.1867 -2.0399 -0.0224 7 7 3.9032 -1.2872 1.2002 8 6 4.9021 -0.9315 2.0322 9 8 4.6567 -0.3034 3.0404 10 6 6.3236 -1.3142 1.7101 11 6 7.2395 -0.7999 2.7906 12 6 7.7935 0.4621 2.6843 13 6 8.6375 0.9320 3.6731 14 6 8.9190 0.1440 4.7735 15 6 9.8342 0.6586 5.8546 16 8 9.2292 1.7839 6.4949 17 14 10.1296 -0.6856 7.1101 18 1 8.8348 -1.0950 7.7110 19 1 10.7582 -1.8550 6.4447 20 1 11.0309 -0.1783 8.1757 21 6 8.3608 -1.1159 4.8824 22 6 7.5210 -1.5878 3.8909 23 6 2.5050 -0.9182 1.5047 24 1 -0.3634 0.4920 0.9022 25 1 -0.3633 0.5353 -0.8773 26 1 -0.3634 -1.0274 -0.0250 27 1 3.5921 1.7384 -0.0250 28 1 2.1244 2.2747 -0.8773 29 1 2.1650 2.2599 0.9021 30 1 1.9690 -1.8599 -1.6193 31 1 2.3740 -0.3051 -2.3954 32 1 4.4088 -1.7172 -2.1313 33 1 4.5232 -0.2446 -1.1403 34 1 5.2166 -2.3956 0.0097 35 1 3.5170 -2.8983 -0.0748 36 1 6.6096 -0.8771 0.7533 37 1 6.4033 -2.3996 1.6519 38 1 7.5702 1.0794 1.8267 39 1 9.0734 1.9165 3.5883 40 1 10.7845 0.9592 5.4135 41 1 9.7641 2.1680 7.2031 42 1 8.5804 -1.7314 5.7422 43 1 7.0848 -2.5722 3.9761 44 1 1.9103 -1.8152 1.6776 45 1 2.4709 -0.2722 2.3820 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_15766672_12335836.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 13:24:04 Heat of formation + Delta-G solvation = -78.383795 kcal Electronic energy + Delta-G solvation = -23344.446728 eV Core-core repulsion = 20064.186218 eV Total energy + Delta-G solvation = -3280.260510 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 307.152 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.26587 -40.15515 -37.72255 -37.33888 -34.19087 -33.28112 -31.98053 -30.38221 -29.30613 -28.42695 -27.68724 -26.56484 -25.06575 -23.87584 -22.65204 -21.84627 -19.92398 -18.50211 -18.14558 -17.71592 -17.04585 -16.84347 -16.47609 -16.11406 -15.49982 -15.22870 -14.94075 -14.81099 -14.47314 -14.34083 -14.32132 -14.12538 -13.93038 -13.87555 -13.47362 -13.42563 -13.24555 -13.18710 -13.09614 -12.99562 -12.84711 -12.30566 -12.18979 -12.04567 -11.96429 -11.79982 -11.70621 -11.47706 -10.92859 -10.77778 -10.34362 -10.32427 -9.90447 -9.61028 -9.25160 0.21116 0.41887 1.13633 1.42166 1.46774 1.51324 1.77024 1.82310 1.87976 1.90727 2.20858 2.57602 2.69858 3.46796 3.64202 3.76432 3.82872 3.91812 4.02464 4.05678 4.19019 4.28091 4.41188 4.48748 4.53752 4.53974 4.58935 4.68917 4.70559 4.71903 4.74978 4.80629 4.82534 4.92651 4.98467 5.01752 5.05327 5.12096 5.33008 5.35246 5.45741 5.49955 5.51547 5.55705 5.60001 5.63969 5.98703 6.41263 6.79982 7.21738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.457 4.457 2 Si 1.062 2.938 3 C -0.464 4.464 4 C -0.401 4.401 5 C -0.129 4.129 6 C 0.087 3.913 7 N -0.595 5.595 8 C 0.503 3.497 9 O -0.586 6.586 10 C -0.098 4.098 11 C -0.072 4.072 12 C -0.115 4.115 13 C -0.102 4.102 14 C -0.094 4.094 15 C -0.084 4.084 16 O -0.565 6.565 17 Si 0.980 3.020 18 H -0.279 1.279 19 H -0.254 1.254 20 H -0.252 1.252 21 C -0.139 4.139 22 C -0.113 4.113 23 C -0.204 4.204 24 H 0.063 0.937 25 H 0.076 0.924 26 H 0.078 0.922 27 H 0.058 0.942 28 H 0.076 0.924 29 H 0.055 0.945 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.096 0.904 33 H 0.063 0.937 34 H 0.107 0.893 35 H 0.090 0.910 36 H 0.131 0.869 37 H 0.130 0.870 38 H 0.136 0.864 39 H 0.133 0.867 40 H 0.097 0.903 41 H 0.397 0.603 42 H 0.125 0.875 43 H 0.136 0.864 44 H 0.080 0.920 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.424 -3.176 -6.481 7.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.565 4.565 2 Si 1.253 2.747 3 C -0.570 4.570 4 C -0.489 4.489 5 C -0.167 4.167 6 C -0.035 4.035 7 N -0.328 5.328 8 C 0.292 3.708 9 O -0.466 6.466 10 C -0.137 4.137 11 C -0.073 4.073 12 C -0.133 4.133 13 C -0.120 4.120 14 C -0.094 4.094 15 C -0.194 4.194 16 O -0.374 6.374 17 Si 0.804 3.196 18 H -0.204 1.204 19 H -0.178 1.178 20 H -0.176 1.176 21 C -0.157 4.157 22 C -0.131 4.131 23 C -0.370 4.370 24 H 0.083 0.917 25 H 0.095 0.905 26 H 0.097 0.903 27 H 0.077 0.923 28 H 0.095 0.905 29 H 0.074 0.926 30 H 0.109 0.891 31 H 0.104 0.896 32 H 0.114 0.886 33 H 0.082 0.918 34 H 0.125 0.875 35 H 0.108 0.892 36 H 0.149 0.851 37 H 0.148 0.852 38 H 0.154 0.846 39 H 0.151 0.849 40 H 0.115 0.885 41 H 0.248 0.752 42 H 0.142 0.858 43 H 0.154 0.846 44 H 0.099 0.901 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 0.996 -3.638 -5.727 6.858 hybrid contribution 0.148 0.698 0.667 0.977 sum 1.144 -2.940 -5.060 5.963 Atomic orbital electron populations 1.26168 1.20574 1.05113 1.04612 0.78829 0.65773 0.65047 0.65086 1.26339 1.05888 1.20689 1.04050 1.26156 1.00463 1.08816 1.13462 1.21501 0.96745 1.00822 0.97672 1.21773 1.04471 0.94726 0.82532 1.48024 1.06086 1.55791 1.22892 1.21113 0.88179 0.78964 0.82521 1.90717 1.85028 1.42222 1.28615 1.20820 0.88634 1.04890 0.99374 1.19589 0.97007 0.94687 0.95986 1.21272 0.96909 0.95332 0.99760 1.21143 0.97988 0.99642 0.93277 1.19559 0.99349 0.94531 0.95932 1.24819 0.97667 0.97359 0.99521 1.86489 1.49404 1.46892 1.54651 0.85280 0.79016 0.77486 0.77770 1.20428 1.17768 1.17565 1.21145 0.98655 0.96283 0.99601 1.21149 0.97672 1.00774 0.93495 1.27181 0.85642 1.07797 1.16365 0.91743 0.90473 0.90326 0.92296 0.90475 0.92605 0.89089 0.89626 0.88608 0.91817 0.87516 0.89204 0.85098 0.85174 0.84609 0.84907 0.88511 0.75244 0.85781 0.84576 0.90113 0.91186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 1.79 8.65 113.37 0.98 2.77 16 2 Si 1.06 -5.23 11.99 68.60 0.82 -4.41 16 3 C -0.46 -0.09 8.65 113.37 0.98 0.89 16 4 C -0.40 3.14 5.03 72.20 0.36 3.51 16 5 C -0.13 1.06 5.67 30.49 0.17 1.24 16 6 C 0.09 -0.63 5.65 86.08 0.49 -0.15 16 7 N -0.60 -0.28 2.63 -626.71 -1.65 -1.93 16 8 C 0.50 3.06 7.69 87.66 0.67 3.73 16 9 O -0.59 -9.94 15.47 -3.06 -0.05 -9.99 16 10 C -0.10 0.10 4.18 29.10 0.12 0.22 16 11 C -0.07 -0.39 4.37 -19.87 -0.09 -0.47 16 12 C -0.11 -0.69 9.70 22.27 0.22 -0.48 16 13 C -0.10 -0.74 9.69 22.27 0.22 -0.52 16 14 C -0.09 -0.71 5.38 -19.87 -0.11 -0.82 16 15 C -0.08 -0.23 2.79 71.24 0.20 -0.03 16 16 O -0.57 -2.46 12.81 -148.98 -1.91 -4.36 16 17 Si 0.98 1.78 25.14 68.60 1.72 3.50 16 18 H -0.28 -1.85 7.04 99.48 0.70 -1.15 16 19 H -0.25 -0.56 7.11 99.48 0.71 0.15 16 20 H -0.25 -0.14 7.11 99.48 0.71 0.57 16 21 C -0.14 -1.08 8.67 22.27 0.19 -0.89 16 22 C -0.11 -0.74 9.70 22.27 0.22 -0.52 16 23 C -0.20 -0.23 5.44 127.52 0.69 0.46 16 24 H 0.06 -0.14 7.96 -2.39 -0.02 -0.16 16 25 H 0.08 -0.34 7.96 -2.38 -0.02 -0.36 16 26 H 0.08 -0.40 7.96 -2.38 -0.02 -0.42 16 27 H 0.06 0.11 7.96 -2.39 -0.02 0.09 16 28 H 0.08 -0.12 7.96 -2.39 -0.02 -0.14 16 29 H 0.05 0.17 7.96 -2.39 -0.02 0.15 16 30 H 0.09 -0.86 7.99 -2.39 -0.02 -0.88 16 31 H 0.08 -0.70 7.99 -2.39 -0.02 -0.72 16 32 H 0.10 -1.03 8.14 -2.39 -0.02 -1.05 16 33 H 0.06 -0.44 7.89 -2.39 -0.02 -0.46 16 34 H 0.11 -1.20 5.93 -2.39 -0.01 -1.22 16 35 H 0.09 -0.83 8.10 -2.38 -0.02 -0.85 16 36 H 0.13 -0.87 7.95 -2.38 -0.02 -0.89 16 37 H 0.13 -0.86 7.55 -2.39 -0.02 -0.87 16 38 H 0.14 0.28 8.06 -2.91 -0.02 0.26 16 39 H 0.13 0.60 8.06 -2.91 -0.02 0.58 16 40 H 0.10 -0.21 7.96 -2.39 -0.02 -0.23 16 41 H 0.40 -2.18 8.74 -74.05 -0.65 -2.82 16 42 H 0.12 0.66 4.87 -2.91 -0.01 0.65 16 43 H 0.14 0.34 8.06 -2.91 -0.02 0.32 16 44 H 0.08 -0.09 8.00 -2.39 -0.02 -0.11 16 45 H 0.07 0.53 6.91 -2.39 -0.02 0.51 16 Total: 0.00 -22.62 360.53 5.33 -17.29 By element: Atomic # 1 Polarization: -10.11 SS G_CDS: 1.07 Total: -9.05 kcal Atomic # 6 Polarization: 3.62 SS G_CDS: 5.32 Total: 8.94 kcal Atomic # 7 Polarization: -0.28 SS G_CDS: -1.65 Total: -1.93 kcal Atomic # 8 Polarization: -12.40 SS G_CDS: -1.96 Total: -14.35 kcal Atomic # 14 Polarization: -3.45 SS G_CDS: 2.55 Total: -0.90 kcal Total: -22.62 5.33 -17.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_15766672_12335836.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.094 kcal (2) G-P(sol) polarization free energy of solvation -22.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds