Wall clock time and date at job start Thu Mar 4 2021 13:44:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86296 * 1 3 3 C 1.86296 * 110.07806 * 2 1 4 4 C 1.87465 * 110.01257 * 238.60628 * 2 1 3 5 5 C 1.53645 * 107.32221 * 194.01836 * 4 2 1 6 6 C 1.52022 * 110.16715 * 60.24116 * 5 4 2 7 7 N 1.46341 * 111.96808 * 288.87420 * 6 5 4 8 8 C 1.34777 * 120.52903 * 250.93470 * 7 6 5 9 9 O 1.21597 * 120.00100 * 184.92114 * 8 7 6 10 10 C 1.47581 * 120.00247 * 4.92761 * 8 7 6 11 11 C 1.36497 * 120.00780 * 75.16786 * 10 8 7 12 12 N 1.35951 * 120.50408 * 180.28087 * 11 10 8 13 13 C 1.36999 * 132.41259 * 179.73606 * 12 11 10 14 14 C 1.50701 * 126.43076 * 359.96086 * 13 12 11 15 15 O 1.42894 * 109.47188 * 29.99909 * 14 13 12 16 16 Si 1.86296 * 109.46827 * 149.99958 * 14 13 12 17 17 H 1.48500 * 109.47367 * 59.99928 * 16 14 13 18 18 H 1.48503 * 109.47212 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47268 * 299.99864 * 16 14 13 20 20 C 1.35010 * 107.13713 * 179.97438 * 13 12 11 21 21 N 1.33585 * 108.65858 * 0.02562 * 20 13 12 22 22 C 1.32417 * 109.21971 * 359.97438 * 21 20 13 23 23 C 1.41253 * 132.11064 * 180.02562 * 22 21 20 24 24 Br 1.89095 * 120.25743 * 359.95454 * 23 22 21 25 25 C 1.35700 * 119.48777 * 179.97438 * 23 22 21 26 26 C 1.47786 * 118.93687 * 70.66715 * 7 6 5 27 27 H 1.08997 * 109.47096 * 298.60283 * 1 2 3 28 28 H 1.09006 * 109.46770 * 58.60053 * 1 2 3 29 29 H 1.08997 * 109.47445 * 178.59864 * 1 2 3 30 30 H 1.09003 * 109.47352 * 181.39066 * 3 2 1 31 31 H 1.08997 * 109.47267 * 301.39707 * 3 2 1 32 32 H 1.09007 * 109.46629 * 61.39641 * 3 2 1 33 33 H 1.08996 * 109.88693 * 313.46895 * 4 2 1 34 34 H 1.08994 * 109.88734 * 74.48923 * 4 2 1 35 35 H 1.09005 * 109.36461 * 180.53918 * 5 4 2 36 36 H 1.08998 * 109.36468 * 300.13992 * 5 4 2 37 37 H 1.08993 * 108.87358 * 168.23494 * 6 5 4 38 38 H 1.08999 * 108.91264 * 49.53697 * 6 5 4 39 39 H 1.08001 * 119.74906 * 359.97438 * 11 10 8 40 40 H 1.08998 * 109.47079 * 269.99698 * 14 13 12 41 41 H 0.96699 * 113.99997 * 59.99823 * 15 14 13 42 42 H 1.08006 * 125.66673 * 179.97438 * 20 13 12 43 43 H 1.08001 * 120.23639 * 180.02562 * 25 23 22 44 44 H 1.08999 * 110.08293 * 64.71037 * 26 7 6 45 45 H 1.08997 * 110.08275 * 186.31111 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.5025 1.7497 0.0000 4 6 2.5045 -0.9176 -1.5036 5 6 3.9982 -1.1911 -1.2697 6 6 4.1866 -2.0400 -0.0228 7 7 3.9032 -1.2874 1.1999 8 6 4.9021 -0.9319 2.0320 9 8 4.6481 -0.3858 3.0883 10 6 6.3041 -1.2052 1.6611 11 6 6.9231 -0.4365 0.7181 12 7 8.2125 -0.6830 0.3647 13 6 9.0546 -0.0843 -0.5349 14 6 8.7277 1.0881 -1.4236 15 8 7.7581 1.9176 -0.7803 16 14 10.2749 2.0751 -1.7437 17 1 11.2826 1.2131 -2.4121 18 1 9.9530 3.2300 -2.6199 19 1 10.8228 2.5686 -0.4547 20 6 10.2322 -0.7419 -0.4761 21 7 10.1312 -1.7194 0.4288 22 6 8.9153 -1.7040 0.9531 23 6 8.2972 -2.5090 1.9355 24 35 9.2554 -3.9196 2.7525 25 6 7.0102 -2.2625 2.2882 26 6 2.5050 -0.9183 1.5044 27 1 -0.3633 0.4920 0.9022 28 1 -0.3633 0.5355 -0.8772 29 1 -0.3634 -1.0273 -0.0251 30 1 3.5922 1.7383 -0.0249 31 1 2.1244 2.2748 -0.8772 32 1 2.1651 2.2598 0.9023 33 1 1.9688 -1.8597 -1.6195 34 1 2.3739 -0.3049 -2.3955 35 1 4.4086 -1.7171 -2.1317 36 1 4.5235 -0.2444 -1.1429 37 1 5.2164 -2.3957 0.0093 38 1 3.5169 -2.8983 -0.0752 39 1 6.3829 0.3705 0.2457 40 1 8.3256 0.7258 -2.3697 41 1 8.0488 2.2760 0.0694 42 1 11.1098 -0.5158 -1.0637 43 1 6.5259 -2.8701 3.0382 44 1 1.9103 -1.8153 1.6774 45 1 2.4712 -0.2709 2.3806 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_15766672_12335884.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 13:44:31 Heat of formation + Delta-G solvation = 2.349536 kcal Electronic energy + Delta-G solvation = -29758.733270 eV Core-core repulsion = 25754.851514 eV Total energy + Delta-G solvation = -4003.881756 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 411.053 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -44.26625 -41.32173 -38.55333 -37.99707 -37.58494 -35.31541 -33.43222 -32.70847 -31.81982 -30.45549 -29.36662 -28.38185 -27.97178 -26.90303 -26.84166 -24.91913 -23.99327 -22.86087 -22.34226 -20.64242 -19.40059 -18.70010 -18.13956 -17.72433 -17.61491 -17.28526 -16.48920 -16.23222 -15.93897 -15.86166 -15.73467 -15.13159 -15.01383 -14.83283 -14.50988 -14.25374 -14.11339 -13.98781 -13.83633 -13.54005 -13.42273 -13.40709 -13.20181 -13.12670 -13.08986 -12.95098 -12.71979 -12.16419 -12.11990 -12.07242 -12.04556 -11.67819 -11.52912 -11.34596 -11.30817 -11.15322 -10.85923 -10.80012 -10.35532 -10.02927 -9.41357 -9.08056 -0.84748 -0.29890 0.16129 0.88427 1.06132 1.43284 1.51472 1.53298 1.59115 1.62746 1.77221 1.90690 1.96359 1.99369 2.14197 2.57034 2.80634 2.95699 3.10295 3.34330 3.47163 3.49220 3.82252 3.89111 4.06728 4.13031 4.30058 4.33046 4.44065 4.47627 4.51242 4.53982 4.63564 4.76949 4.78823 4.83109 4.84686 4.86928 4.94273 5.00268 5.02891 5.26189 5.27914 5.33191 5.50876 5.58452 5.61034 5.65028 6.11474 6.36626 6.50631 6.85988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.457 4.457 2 Si 1.066 2.934 3 C -0.463 4.463 4 C -0.405 4.405 5 C -0.127 4.127 6 C 0.089 3.911 7 N -0.577 5.577 8 C 0.570 3.430 9 O -0.563 6.563 10 C -0.152 4.152 11 C 0.135 3.865 12 N -0.349 5.349 13 C -0.079 4.079 14 C -0.043 4.043 15 O -0.549 6.549 16 Si 1.003 2.997 17 H -0.239 1.239 18 H -0.258 1.258 19 H -0.268 1.268 20 C 0.027 3.973 21 N -0.496 5.496 22 C 0.223 3.777 23 C -0.073 4.073 24 Br 0.000 7.000 25 C -0.027 4.027 26 C -0.204 4.204 27 H 0.067 0.933 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.062 0.938 31 H 0.076 0.924 32 H 0.061 0.939 33 H 0.090 0.910 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.067 0.933 37 H 0.081 0.919 38 H 0.098 0.902 39 H 0.202 0.798 40 H 0.147 0.853 41 H 0.389 0.611 42 H 0.209 0.791 43 H 0.165 0.835 44 H 0.091 0.909 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.119 1.190 -6.876 8.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.565 4.565 2 Si 1.257 2.743 3 C -0.570 4.570 4 C -0.492 4.492 5 C -0.166 4.166 6 C -0.033 4.033 7 N -0.307 5.307 8 C 0.356 3.644 9 O -0.442 6.442 10 C -0.160 4.160 11 C 0.010 3.990 12 N -0.022 5.022 13 C -0.191 4.191 14 C -0.153 4.153 15 O -0.355 6.355 16 Si 0.823 3.177 17 H -0.162 1.162 18 H -0.182 1.182 19 H -0.192 1.192 20 C -0.123 4.123 21 N -0.215 5.215 22 C -0.022 4.022 23 C -0.156 4.156 24 Br 0.086 6.914 25 C -0.053 4.053 26 C -0.369 4.369 27 H 0.086 0.914 28 H 0.095 0.905 29 H 0.096 0.904 30 H 0.081 0.919 31 H 0.095 0.905 32 H 0.080 0.920 33 H 0.109 0.891 34 H 0.106 0.894 35 H 0.106 0.894 36 H 0.085 0.915 37 H 0.099 0.901 38 H 0.117 0.883 39 H 0.218 0.782 40 H 0.164 0.836 41 H 0.238 0.762 42 H 0.226 0.774 43 H 0.183 0.817 44 H 0.109 0.891 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -2.823 0.756 -6.527 7.152 hybrid contribution -0.655 0.514 0.773 1.137 sum -3.479 1.270 -5.754 6.843 Atomic orbital electron populations 1.26168 1.20420 1.05163 1.04795 0.78787 0.65899 0.65256 0.64367 1.26309 1.06147 1.20074 1.04437 1.26234 0.99608 1.09081 1.14265 1.21483 0.97511 1.00606 0.96972 1.21707 1.03322 0.95263 0.82970 1.47938 1.06400 1.54278 1.22099 1.17822 0.84258 0.78878 0.83477 1.90842 1.84205 1.44487 1.24629 1.19229 0.95985 0.99994 1.00744 1.22152 0.82604 0.99487 0.94768 1.42629 1.09745 1.22598 1.27218 1.22429 0.91285 1.04245 1.01133 1.24942 1.05264 0.88704 0.96420 1.86451 1.42606 1.66432 1.40051 0.84953 0.73615 0.78555 0.80583 1.16211 1.18221 1.19185 1.22917 0.98114 0.93115 0.98112 1.70806 1.14829 1.23240 1.12591 1.20492 0.89718 0.92498 0.99464 1.20469 0.95425 0.99230 1.00448 1.96820 1.75110 1.41228 1.78262 1.21083 0.91222 0.95366 0.97593 1.27376 0.83853 1.08536 1.17153 0.91369 0.90546 0.90395 0.91877 0.90506 0.91962 0.89129 0.89423 0.89387 0.91455 0.90061 0.88339 0.78177 0.83573 0.76190 0.77436 0.81732 0.89078 0.89698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 3.13 8.65 113.37 0.98 4.11 16 2 Si 1.07 -8.79 11.99 68.60 0.82 -7.97 16 3 C -0.46 1.88 8.65 113.37 0.98 2.86 16 4 C -0.41 3.84 5.03 72.20 0.36 4.20 16 5 C -0.13 1.07 5.67 30.49 0.17 1.25 16 6 C 0.09 -0.58 5.48 86.09 0.47 -0.11 16 7 N -0.58 1.00 2.63 -630.15 -1.66 -0.66 16 8 C 0.57 2.24 7.07 86.71 0.61 2.85 16 9 O -0.56 -6.97 16.56 -4.02 -0.07 -7.04 16 10 C -0.15 -0.26 3.73 -20.35 -0.08 -0.33 16 11 C 0.13 -0.08 9.67 83.65 0.81 0.73 16 12 N -0.35 -0.69 2.93 -337.70 -0.99 -1.68 16 13 C -0.08 0.06 6.24 41.01 0.26 0.32 16 14 C -0.04 0.28 3.06 71.24 0.22 0.50 16 15 O -0.55 3.26 10.90 -148.98 -1.62 1.64 16 16 Si 1.00 -6.03 26.60 68.60 1.83 -4.20 16 17 H -0.24 1.55 6.84 99.48 0.68 2.23 16 18 H -0.26 0.91 7.11 99.48 0.71 1.62 16 19 H -0.27 0.71 7.11 99.48 0.71 1.42 16 20 C 0.03 0.06 10.44 83.68 0.87 0.93 16 21 N -0.50 -4.24 11.30 -194.10 -2.19 -6.44 16 22 C 0.22 1.52 7.59 134.19 1.02 2.54 16 23 C -0.07 -0.40 6.24 22.42 0.14 -0.26 16 24 Br 0.00 0.00 33.72 -20.37 -0.69 -0.68 16 25 C -0.03 -0.07 9.54 22.55 0.22 0.14 16 26 C -0.20 0.63 5.43 127.52 0.69 1.33 16 27 H 0.07 -0.38 7.96 -2.39 -0.02 -0.40 16 28 H 0.08 -0.52 7.96 -2.38 -0.02 -0.54 16 29 H 0.08 -0.59 7.96 -2.39 -0.02 -0.61 16 30 H 0.06 -0.18 7.96 -2.39 -0.02 -0.20 16 31 H 0.08 -0.38 7.96 -2.39 -0.02 -0.40 16 32 H 0.06 -0.13 7.96 -2.38 -0.02 -0.15 16 33 H 0.09 -0.97 7.99 -2.39 -0.02 -0.99 16 34 H 0.09 -0.86 7.99 -2.39 -0.02 -0.88 16 35 H 0.09 -0.83 8.14 -2.38 -0.02 -0.85 16 36 H 0.07 -0.54 7.90 -2.39 -0.02 -0.56 16 37 H 0.08 -0.47 6.24 -2.39 -0.01 -0.49 16 38 H 0.10 -0.89 8.10 -2.39 -0.02 -0.91 16 39 H 0.20 -0.91 6.69 -2.91 -0.02 -0.93 16 40 H 0.15 -1.47 7.96 -2.39 -0.02 -1.48 16 41 H 0.39 -3.75 8.70 -74.06 -0.64 -4.40 16 42 H 0.21 -0.73 6.72 -2.91 -0.02 -0.75 16 43 H 0.17 0.08 8.06 -2.91 -0.02 0.06 16 44 H 0.09 -0.50 8.00 -2.39 -0.02 -0.52 16 45 H 0.08 0.11 6.93 -2.39 -0.02 0.10 16 Total: 0.00 -19.87 387.38 4.26 -15.61 By element: Atomic # 1 Polarization: -10.73 SS G_CDS: 1.11 Total: -9.63 kcal Atomic # 6 Polarization: 13.33 SS G_CDS: 7.73 Total: 21.06 kcal Atomic # 7 Polarization: -3.93 SS G_CDS: -4.85 Total: -8.78 kcal Atomic # 8 Polarization: -3.71 SS G_CDS: -1.69 Total: -5.40 kcal Atomic # 14 Polarization: -14.82 SS G_CDS: 2.65 Total: -12.18 kcal Atomic # 35 Polarization: 0.00 SS G_CDS: -0.69 Total: -0.68 kcal Total: -19.87 4.26 -15.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_15766672_12335884.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.958 kcal (2) G-P(sol) polarization free energy of solvation -19.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.608 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds