Wall clock time and date at job start Thu Mar 4 2021 13:45:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86295 * 1 3 3 C 1.86303 * 110.07575 * 2 1 4 4 C 1.87461 * 110.01460 * 238.60706 * 2 1 3 5 5 C 1.53653 * 107.32567 * 194.01881 * 4 2 1 6 6 C 1.52012 * 110.16360 * 60.23662 * 5 4 2 7 7 N 1.46334 * 111.97305 * 288.87332 * 6 5 4 8 8 C 1.34774 * 120.53380 * 250.94381 * 7 6 5 9 9 O 1.21570 * 120.00454 * 185.39619 * 8 7 6 10 10 C 1.47695 * 120.00184 * 5.39699 * 8 7 6 11 11 C 1.39614 * 120.15687 * 53.91620 * 10 8 7 12 12 C 1.38115 * 119.85541 * 179.97438 * 11 10 8 13 13 F 1.35097 * 119.91842 * 179.97438 * 12 11 10 14 14 C 1.38612 * 120.16152 * 0.24993 * 12 11 10 15 15 C 1.50704 * 119.84049 * 179.74500 * 14 12 11 16 16 O 1.42895 * 109.47261 * 285.00432 * 15 14 12 17 17 Si 1.86294 * 109.47066 * 165.00126 * 15 14 12 18 18 H 1.48502 * 109.47113 * 60.00257 * 17 15 14 19 19 H 1.48500 * 109.47402 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47228 * 300.00594 * 17 15 14 21 21 C 1.38224 * 120.31394 * 359.49532 * 14 12 11 22 22 C 1.38267 * 120.15122 * 0.50638 * 21 14 12 23 23 F 1.35095 * 120.08878 * 179.76802 * 22 21 14 24 24 C 1.47794 * 118.93255 * 70.67038 * 7 6 5 25 25 H 1.08997 * 109.47014 * 298.60808 * 1 2 3 26 26 H 1.09000 * 109.46876 * 58.60068 * 1 2 3 27 27 H 1.09003 * 109.47251 * 178.60071 * 1 2 3 28 28 H 1.09002 * 109.46930 * 181.39655 * 3 2 1 29 29 H 1.09002 * 109.47395 * 301.39698 * 3 2 1 30 30 H 1.08997 * 109.47025 * 61.39837 * 3 2 1 31 31 H 1.09004 * 109.88598 * 313.47261 * 4 2 1 32 32 H 1.09002 * 109.88629 * 74.56255 * 4 2 1 33 33 H 1.08999 * 109.36055 * 180.53988 * 5 4 2 34 34 H 1.08999 * 109.35606 * 300.13289 * 5 4 2 35 35 H 1.08998 * 108.86964 * 168.23655 * 6 5 4 36 36 H 1.08998 * 108.91352 * 49.54544 * 6 5 4 37 37 H 1.08005 * 120.07483 * 359.95684 * 11 10 8 38 38 H 1.09005 * 109.46665 * 45.00249 * 15 14 12 39 39 H 0.96695 * 114.00132 * 299.99777 * 16 15 14 40 40 H 1.08004 * 119.92654 * 180.25640 * 21 14 12 41 41 H 1.08996 * 110.07766 * 64.71109 * 24 7 6 42 42 H 1.09005 * 110.07937 * 186.31019 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.5025 1.7498 0.0000 4 6 2.5046 -0.9175 -1.5036 5 6 3.9983 -1.1911 -1.2697 6 6 4.1867 -2.0399 -0.0228 7 7 3.9034 -1.2873 1.1998 8 6 4.9021 -0.9317 2.0319 9 8 4.6478 -0.3935 3.0919 10 6 6.3058 -1.1957 1.6560 11 6 6.8029 -0.7377 0.4344 12 6 8.1167 -0.9877 0.0894 13 9 8.5988 -0.5455 -1.0926 14 6 8.9401 -1.6960 0.9505 15 6 10.3709 -1.9697 0.5642 16 8 10.4085 -3.0002 -0.4250 17 14 11.3261 -2.5164 2.0672 18 1 10.7169 -3.7537 2.6179 19 1 12.7362 -2.7855 1.6868 20 1 11.2870 -1.4456 3.0952 21 6 8.4567 -2.1482 2.1639 22 6 7.1436 -1.9053 2.5224 23 9 6.6711 -2.3519 3.7066 24 6 2.5050 -0.9183 1.5044 25 1 -0.3633 0.4921 0.9022 26 1 -0.3633 0.5354 -0.8772 27 1 -0.3634 -1.0274 -0.0251 28 1 3.5921 1.7384 -0.0250 29 1 2.1243 2.2749 -0.8772 30 1 2.1651 2.2599 0.9022 31 1 1.9688 -1.8597 -1.6195 32 1 2.3751 -0.3042 -2.3953 33 1 4.4086 -1.7171 -2.1317 34 1 4.5235 -0.2444 -1.1430 35 1 5.2165 -2.3956 0.0093 36 1 3.5170 -2.8983 -0.0752 37 1 6.1613 -0.1893 -0.2396 38 1 10.8181 -1.0615 0.1600 39 1 10.0262 -3.8392 -0.1337 40 1 9.1050 -2.6960 2.8318 41 1 1.9105 -1.8152 1.6773 42 1 2.4712 -0.2708 2.3807 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_15766672_12360598.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 13:45:10 Heat of formation + Delta-G solvation = -156.129002 kcal Electronic energy + Delta-G solvation = -27129.885513 eV Core-core repulsion = 23062.883386 eV Total energy + Delta-G solvation = -4067.002127 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.117 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -50.27187 -50.10832 -41.59251 -39.96667 -37.70500 -37.58403 -33.52317 -33.38800 -31.46098 -29.48098 -28.65056 -28.40511 -27.42403 -26.24569 -24.51651 -23.51382 -22.70655 -20.84461 -19.32180 -18.80413 -18.75492 -18.00627 -17.67911 -17.03144 -16.82632 -16.60815 -16.43498 -16.35632 -15.96425 -15.71496 -15.33226 -14.95128 -14.82842 -14.65666 -14.53180 -14.17436 -14.00704 -13.87627 -13.84992 -13.50798 -13.27442 -13.23472 -13.15542 -13.10380 -12.91376 -12.37821 -12.22351 -12.13871 -12.01333 -11.85172 -11.63333 -11.21347 -10.83247 -10.57628 -10.51351 -10.35326 -9.90441 -9.42155 -0.73291 -0.37850 1.04126 1.21265 1.39953 1.50510 1.54191 1.69781 1.88163 1.88557 1.92542 2.10858 2.54322 2.71864 2.82344 3.02622 3.28794 3.30612 3.54886 3.73237 3.89043 4.07361 4.13518 4.26061 4.37563 4.41712 4.46007 4.55018 4.62355 4.63409 4.70929 4.71581 4.74465 4.81933 4.83852 4.86332 4.94755 5.03529 5.26516 5.30957 5.35766 5.48398 5.58409 5.62598 6.09519 6.63646 6.84180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.455 4.455 2 Si 1.066 2.934 3 C -0.465 4.465 4 C -0.401 4.401 5 C -0.131 4.131 6 C 0.083 3.917 7 N -0.579 5.579 8 C 0.549 3.451 9 O -0.569 6.569 10 C -0.135 4.135 11 C -0.089 4.089 12 C 0.118 3.882 13 F -0.122 7.122 14 C -0.101 4.101 15 C -0.082 4.082 16 O -0.541 6.541 17 Si 0.976 3.024 18 H -0.237 1.237 19 H -0.264 1.264 20 H -0.256 1.256 21 C -0.129 4.129 22 C 0.124 3.876 23 F -0.134 7.134 24 C -0.208 4.208 25 H 0.066 0.934 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.059 0.941 29 H 0.079 0.921 30 H 0.059 0.941 31 H 0.093 0.907 32 H 0.090 0.910 33 H 0.098 0.902 34 H 0.067 0.933 35 H 0.090 0.910 36 H 0.098 0.902 37 H 0.172 0.828 38 H 0.130 0.870 39 H 0.393 0.607 40 H 0.168 0.832 41 H 0.088 0.912 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.944 -2.747 -5.608 6.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.563 4.563 2 Si 1.257 2.743 3 C -0.571 4.571 4 C -0.489 4.489 5 C -0.169 4.169 6 C -0.039 4.039 7 N -0.310 5.310 8 C 0.337 3.663 9 O -0.449 6.449 10 C -0.140 4.140 11 C -0.108 4.108 12 C 0.098 3.902 13 F -0.101 7.101 14 C -0.103 4.103 15 C -0.192 4.192 16 O -0.349 6.349 17 Si 0.798 3.202 18 H -0.161 1.161 19 H -0.188 1.188 20 H -0.180 1.180 21 C -0.147 4.147 22 C 0.104 3.896 23 F -0.112 7.112 24 C -0.372 4.372 25 H 0.085 0.915 26 H 0.097 0.903 27 H 0.097 0.903 28 H 0.078 0.922 29 H 0.098 0.902 30 H 0.078 0.922 31 H 0.112 0.888 32 H 0.109 0.891 33 H 0.116 0.884 34 H 0.085 0.915 35 H 0.108 0.892 36 H 0.116 0.884 37 H 0.190 0.810 38 H 0.148 0.852 39 H 0.243 0.757 40 H 0.185 0.815 41 H 0.106 0.894 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -0.344 -2.291 -4.631 5.178 hybrid contribution -0.541 -0.034 0.543 0.768 sum -0.885 -2.325 -4.088 4.785 Atomic orbital electron populations 1.26138 1.20144 1.05229 1.04815 0.78803 0.66078 0.65069 0.64373 1.26337 1.05962 1.20380 1.04454 1.26186 0.99652 1.09132 1.13919 1.21580 0.97552 1.00586 0.97179 1.21849 1.03923 0.95301 0.82785 1.47931 1.06310 1.54400 1.22368 1.18303 0.85277 0.79161 0.83582 1.90813 1.84519 1.45052 1.24554 1.19738 0.94649 1.03564 0.96012 1.21356 0.94761 0.99605 0.95057 1.17236 0.91824 0.98189 0.82968 1.91579 1.88111 1.87021 1.43357 1.20529 0.98435 0.98036 0.93269 1.25093 0.93662 0.96570 1.03825 1.86571 1.84314 1.23759 1.40241 0.85289 0.79006 0.81323 0.74562 1.16074 1.18819 1.18013 1.21076 0.93689 1.02382 0.97573 1.17685 0.92600 0.97537 0.81800 1.91559 1.88839 1.86848 1.43944 1.27446 0.84011 1.08391 1.17327 0.91526 0.90316 0.90297 0.92182 0.90201 0.92195 0.88846 0.89082 0.88376 0.91479 0.89186 0.88366 0.81050 0.85213 0.75703 0.81454 0.89353 0.90351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 2.63 8.65 113.37 0.98 3.61 16 2 Si 1.07 -7.12 11.99 68.60 0.82 -6.30 16 3 C -0.47 1.00 8.65 113.37 0.98 1.98 16 4 C -0.40 3.63 5.03 72.20 0.36 3.99 16 5 C -0.13 1.07 5.33 30.49 0.16 1.23 16 6 C 0.08 -0.44 5.00 86.09 0.43 -0.01 16 7 N -0.58 -0.82 2.64 -630.07 -1.66 -2.48 16 8 C 0.55 4.52 6.89 86.74 0.60 5.12 16 9 O -0.57 -9.94 16.31 -3.94 -0.06 -10.01 16 10 C -0.14 -0.52 4.55 -20.06 -0.09 -0.62 16 11 C -0.09 0.09 7.84 22.57 0.18 0.27 16 12 C 0.12 -0.09 7.23 22.33 0.16 0.07 16 13 F -0.12 -0.13 16.73 44.97 0.75 0.62 16 14 C -0.10 0.20 5.27 -19.78 -0.10 0.10 16 15 C -0.08 0.31 2.44 71.24 0.17 0.49 16 16 O -0.54 1.67 12.88 -148.98 -1.92 -0.25 16 17 Si 0.98 -4.10 25.47 68.60 1.75 -2.35 16 18 H -0.24 1.36 6.73 99.48 0.67 2.03 16 19 H -0.26 0.22 7.11 99.48 0.71 0.93 16 20 H -0.26 0.51 7.11 99.48 0.71 1.21 16 21 C -0.13 0.12 8.62 22.27 0.19 0.31 16 22 C 0.12 0.55 7.27 22.67 0.16 0.72 16 23 F -0.13 -1.27 16.65 44.97 0.75 -0.52 16 24 C -0.21 0.02 5.42 127.52 0.69 0.71 16 25 H 0.07 -0.28 7.96 -2.39 -0.02 -0.30 16 26 H 0.08 -0.49 7.96 -2.39 -0.02 -0.51 16 27 H 0.08 -0.53 7.96 -2.39 -0.02 -0.55 16 28 H 0.06 -0.04 7.96 -2.39 -0.02 -0.06 16 29 H 0.08 -0.30 7.96 -2.39 -0.02 -0.32 16 30 H 0.06 0.02 7.96 -2.39 -0.02 0.00 16 31 H 0.09 -0.99 7.99 -2.39 -0.02 -1.01 16 32 H 0.09 -0.89 7.99 -2.39 -0.02 -0.91 16 33 H 0.10 -1.01 8.14 -2.39 -0.02 -1.03 16 34 H 0.07 -0.53 6.18 -2.39 -0.01 -0.54 16 35 H 0.09 -0.53 5.55 -2.39 -0.01 -0.55 16 36 H 0.10 -0.79 8.10 -2.39 -0.02 -0.81 16 37 H 0.17 -0.82 5.74 -2.91 -0.02 -0.84 16 38 H 0.13 -0.58 7.89 -2.38 -0.02 -0.60 16 39 H 0.39 -4.15 8.70 -74.06 -0.64 -4.80 16 40 H 0.17 -0.73 4.85 -2.91 -0.01 -0.75 16 41 H 0.09 -0.22 8.00 -2.39 -0.02 -0.24 16 42 H 0.08 0.40 6.94 -2.38 -0.02 0.39 16 Total: 0.00 -19.02 345.67 6.44 -12.58 By element: Atomic # 1 Polarization: -10.39 SS G_CDS: 1.14 Total: -9.26 kcal Atomic # 6 Polarization: 13.08 SS G_CDS: 4.88 Total: 17.96 kcal Atomic # 7 Polarization: -0.82 SS G_CDS: -1.66 Total: -2.48 kcal Atomic # 8 Polarization: -8.27 SS G_CDS: -1.98 Total: -10.26 kcal Atomic # 9 Polarization: -1.40 SS G_CDS: 1.50 Total: 0.10 kcal Atomic # 14 Polarization: -11.22 SS G_CDS: 2.57 Total: -8.65 kcal Total: -19.02 6.44 -12.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_15766672_12360598.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -143.552 kcal (2) G-P(sol) polarization free energy of solvation -19.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -12.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds