Wall clock time and date at job start Thu Mar 4 2021 13:56:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86305 * 1 3 3 C 1.86298 * 110.07400 * 2 1 4 4 C 1.87465 * 110.01487 * 238.60364 * 2 1 3 5 5 C 1.53637 * 107.32200 * 194.01551 * 4 2 1 6 6 C 1.52502 * 110.12753 * 60.34306 * 5 4 2 7 7 N 1.46343 * 111.68888 * 288.73403 * 6 5 4 8 8 C 1.34771 * 120.52910 * 250.86870 * 7 6 5 9 9 O 1.21654 * 119.99871 * 179.68712 * 8 7 6 10 10 C 1.47065 * 120.00233 * 359.68722 * 8 7 6 11 11 C 1.35859 * 125.42534 * 208.12592 * 10 8 7 12 12 C 1.41591 * 107.72988 * 179.97438 * 11 10 8 13 13 C 1.40060 * 133.38552 * 180.02562 * 12 11 10 14 14 C 1.36477 * 119.83057 * 179.97438 * 13 12 11 15 15 C 1.38891 * 120.61591 * 0.04897 * 14 13 12 16 16 C 1.50705 * 119.67873 * 179.97438 * 15 14 13 17 17 O 1.42897 * 109.47175 * 119.97574 * 16 15 14 18 18 Si 1.86304 * 109.46557 * 359.97438 * 16 15 14 19 19 H 1.48506 * 109.46649 * 180.02562 * 18 16 15 20 20 H 1.48499 * 109.47240 * 299.99884 * 18 16 15 21 21 H 1.48496 * 109.47469 * 60.00413 * 18 16 15 22 22 C 1.37708 * 120.64924 * 359.95560 * 15 14 13 23 23 C 1.39182 * 119.80907 * 0.02562 * 22 15 14 24 24 N 1.37487 * 133.18871 * 180.32262 * 23 22 15 25 25 C 1.47785 * 118.93847 * 70.89063 * 7 6 5 26 26 H 1.08997 * 109.47066 * 298.60224 * 1 2 3 27 27 H 1.08994 * 109.47230 * 58.60379 * 1 2 3 28 28 H 1.09000 * 109.46642 * 178.60141 * 1 2 3 29 29 H 1.09003 * 109.46635 * 181.39348 * 3 2 1 30 30 H 1.08995 * 109.47322 * 301.39786 * 3 2 1 31 31 H 1.09001 * 109.46885 * 61.40218 * 3 2 1 32 32 H 1.09005 * 109.88090 * 74.56118 * 4 2 1 33 33 H 1.08996 * 109.88538 * 313.47278 * 4 2 1 34 34 H 1.09004 * 109.36688 * 300.13624 * 5 4 2 35 35 H 1.09002 * 109.35988 * 180.53852 * 5 4 2 36 36 H 1.09007 * 109.03391 * 49.29755 * 6 5 4 37 37 H 1.08999 * 109.03949 * 168.23414 * 6 5 4 38 38 H 1.07998 * 126.14000 * 359.97438 * 11 10 8 39 39 H 1.08000 * 120.09009 * 0.02562 * 13 12 11 40 40 H 1.08003 * 119.69256 * 180.02562 * 14 13 12 41 41 H 1.08994 * 109.47127 * 239.98479 * 16 15 14 42 42 H 0.96703 * 113.99792 * 180.02562 * 17 16 15 43 43 H 1.08008 * 120.09959 * 180.02562 * 22 15 14 44 44 H 0.97000 * 125.60557 * 359.96019 * 24 23 22 45 45 H 1.09001 * 110.08298 * 64.45404 * 25 7 6 46 46 H 1.08996 * 110.08662 * 186.06837 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8631 0.0000 0.0000 3 6 2.5025 1.7498 0.0000 4 6 2.5047 -0.9176 -1.5035 5 6 3.9983 -1.1910 -1.2696 6 6 4.1862 -2.0447 -0.0200 7 7 3.9034 -1.2873 1.1999 8 6 4.9021 -0.9324 2.0324 9 8 4.6567 -0.2980 3.0410 10 6 6.2885 -1.3122 1.7216 11 6 7.2722 -1.5183 2.6356 12 6 8.4499 -1.8661 1.9306 13 6 9.7531 -2.1851 2.3325 14 6 10.6983 -2.4855 1.3951 15 6 10.3811 -2.4772 0.0429 16 6 11.4416 -2.8117 -0.9744 17 8 11.0343 -3.9549 -1.7288 18 14 13.0447 -3.1829 -0.1009 19 1 14.0899 -3.5119 -1.1033 20 1 13.4680 -1.9949 0.6831 21 1 12.8545 -4.3373 0.8136 22 6 9.1071 -2.1668 -0.3775 23 6 8.1255 -1.8573 0.5595 24 7 6.7967 -1.5208 0.4541 25 6 2.5052 -0.9183 1.5045 26 1 -0.3633 0.4920 0.9022 27 1 -0.3633 0.5353 -0.8771 28 1 -0.3632 -1.0274 -0.0251 29 1 3.5922 1.7384 -0.0250 30 1 2.1244 2.2748 -0.8771 31 1 2.1652 2.2599 0.9023 32 1 2.3751 -0.3043 -2.3953 33 1 1.9690 -1.8598 -1.6194 34 1 4.5236 -0.2443 -1.1429 35 1 4.4087 -1.7171 -2.1316 36 1 3.5141 -2.9014 -0.0703 37 1 5.2153 -2.4020 0.0152 38 1 7.1738 -1.4324 3.7077 39 1 10.0092 -2.1942 3.3817 40 1 11.7024 -2.7315 1.7075 41 1 11.5814 -1.9643 -1.6455 42 1 11.6707 -4.2279 -2.4037 43 1 8.8701 -2.1634 -1.4312 44 1 6.2982 -1.4413 -0.3743 45 1 1.9105 -1.8153 1.6774 46 1 2.4713 -0.2708 2.3807 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_15766672_13158378.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 13:56:02 Heat of formation + Delta-G solvation = -21.918367 kcal Electronic energy + Delta-G solvation = -26522.955402 eV Core-core repulsion = 22923.265225 eV Total energy + Delta-G solvation = -3599.690177 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 332.147 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.92903 -40.77167 -38.85329 -37.78408 -36.95021 -33.52730 -33.36946 -31.46810 -30.54618 -29.45013 -28.47411 -28.34024 -27.24754 -25.93698 -24.16739 -22.95809 -22.38400 -21.96996 -20.68185 -18.87171 -18.51213 -18.21266 -17.38583 -17.19226 -16.71057 -16.27141 -15.84788 -15.63206 -15.35666 -15.14878 -14.89259 -14.76550 -14.59123 -14.34711 -14.18024 -14.09358 -13.99274 -13.87287 -13.57543 -13.46835 -13.25215 -13.14812 -13.07098 -12.78331 -12.43815 -12.21630 -12.16627 -12.08374 -11.88117 -11.69676 -11.64447 -11.26678 -10.98463 -10.85840 -10.41830 -10.27383 -9.54836 -9.30569 -8.83851 -0.36811 0.46980 0.89816 1.21954 1.48601 1.51700 1.57101 1.64875 1.74491 1.85005 1.95682 1.98341 2.21797 2.51879 2.71267 3.25523 3.47284 3.61327 3.70077 3.90206 3.93688 3.96938 4.18612 4.27554 4.30501 4.38954 4.42821 4.47421 4.53838 4.62832 4.66970 4.70513 4.73756 4.81189 4.83363 4.84459 4.91987 4.92877 4.95510 5.15851 5.21449 5.32254 5.36567 5.43442 5.50353 5.52819 5.54057 5.61432 5.93555 6.08561 6.28800 6.84576 6.86530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.454 4.454 2 Si 1.069 2.931 3 C -0.467 4.467 4 C -0.400 4.400 5 C -0.137 4.137 6 C 0.065 3.935 7 N -0.584 5.584 8 C 0.572 3.428 9 O -0.565 6.565 10 C 0.014 3.986 11 C -0.124 4.124 12 C -0.133 4.133 13 C -0.060 4.060 14 C -0.160 4.160 15 C -0.055 4.055 16 C -0.078 4.078 17 O -0.561 6.561 18 Si 0.978 3.022 19 H -0.257 1.257 20 H -0.259 1.259 21 H -0.272 1.272 22 C -0.103 4.103 23 C 0.101 3.899 24 N -0.567 5.567 25 C -0.208 4.208 26 H 0.067 0.933 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.054 0.946 30 H 0.078 0.922 31 H 0.059 0.941 32 H 0.092 0.908 33 H 0.096 0.904 34 H 0.064 0.936 35 H 0.104 0.896 36 H 0.103 0.897 37 H 0.092 0.908 38 H 0.154 0.846 39 H 0.145 0.855 40 H 0.132 0.868 41 H 0.100 0.900 42 H 0.399 0.601 43 H 0.145 0.855 44 H 0.433 0.567 45 H 0.090 0.910 46 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.380 -1.761 -7.763 7.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.562 4.562 2 Si 1.259 2.741 3 C -0.573 4.573 4 C -0.488 4.488 5 C -0.175 4.175 6 C -0.058 4.058 7 N -0.315 5.315 8 C 0.360 3.640 9 O -0.444 6.444 10 C -0.096 4.096 11 C -0.151 4.151 12 C -0.137 4.137 13 C -0.079 4.079 14 C -0.179 4.179 15 C -0.057 4.057 16 C -0.188 4.188 17 O -0.370 6.370 18 Si 0.803 3.197 19 H -0.181 1.181 20 H -0.184 1.184 21 H -0.197 1.197 22 C -0.123 4.123 23 C -0.009 4.009 24 N -0.179 5.179 25 C -0.372 4.372 26 H 0.086 0.914 27 H 0.097 0.903 28 H 0.098 0.902 29 H 0.073 0.927 30 H 0.097 0.903 31 H 0.079 0.921 32 H 0.111 0.889 33 H 0.114 0.886 34 H 0.083 0.917 35 H 0.122 0.878 36 H 0.121 0.879 37 H 0.110 0.890 38 H 0.172 0.828 39 H 0.163 0.837 40 H 0.149 0.851 41 H 0.118 0.882 42 H 0.249 0.751 43 H 0.163 0.837 44 H 0.279 0.721 45 H 0.109 0.891 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -0.399 -1.534 -6.507 6.697 hybrid contribution -0.096 0.209 -0.231 0.326 sum -0.496 -1.324 -6.738 6.884 Atomic orbital electron populations 1.26120 1.19898 1.05322 1.04889 0.78758 0.66155 0.64763 0.64388 1.26372 1.05626 1.20821 1.04447 1.26155 0.99163 1.09330 1.14113 1.21702 0.98420 1.00394 0.97027 1.22322 1.04257 0.95813 0.83396 1.47903 1.06684 1.54611 1.22296 1.17531 0.83755 0.79587 0.83104 1.90820 1.83800 1.41659 1.28139 1.19971 0.94056 1.10269 0.85276 1.21038 0.90634 1.03774 0.99634 1.18385 0.95003 1.07651 0.92681 1.20548 0.90247 0.96352 1.00739 1.20673 1.00202 1.04477 0.92519 1.19271 0.94261 0.98775 0.93413 1.24715 1.04414 0.92083 0.97587 1.86459 1.50368 1.46417 1.53746 0.85284 0.74838 0.80175 0.79364 1.18089 1.18356 1.19679 1.20013 0.90595 1.02885 0.98817 1.18553 0.84991 1.01902 0.95419 1.42667 1.08227 1.59552 1.07452 1.27428 0.83815 1.08522 1.17454 0.91422 0.90304 0.90171 0.92717 0.90250 0.92140 0.88913 0.88570 0.91736 0.87806 0.87853 0.89010 0.82844 0.83743 0.85056 0.88190 0.75075 0.83744 0.72054 0.89109 0.90040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 2.68 8.65 113.37 0.98 3.66 16 2 Si 1.07 -6.89 11.99 68.60 0.82 -6.07 16 3 C -0.47 0.50 8.65 113.37 0.98 1.49 16 4 C -0.40 3.64 5.03 72.20 0.36 4.00 16 5 C -0.14 1.13 4.85 30.64 0.15 1.27 16 6 C 0.06 -0.31 5.16 86.24 0.44 0.14 16 7 N -0.58 -1.16 2.63 -629.82 -1.65 -2.81 16 8 C 0.57 5.31 7.63 86.56 0.66 5.97 16 9 O -0.56 -9.72 16.40 -4.20 -0.07 -9.79 16 10 C 0.01 0.10 6.29 39.91 0.25 0.35 16 11 C -0.12 -1.05 10.64 22.55 0.24 -0.81 16 12 C -0.13 -0.95 6.16 -21.36 -0.13 -1.08 16 13 C -0.06 -0.28 10.06 22.30 0.22 -0.05 16 14 C -0.16 -0.56 8.59 22.01 0.19 -0.37 16 15 C -0.06 -0.14 5.43 -19.83 -0.11 -0.25 16 16 C -0.08 0.18 2.80 71.24 0.20 0.38 16 17 O -0.56 1.12 12.73 -148.98 -1.90 -0.78 16 18 Si 0.98 -1.83 25.03 68.60 1.72 -0.11 16 19 H -0.26 0.60 7.11 99.48 0.71 1.31 16 20 H -0.26 0.09 7.11 99.48 0.71 0.80 16 21 H -0.27 -0.59 7.11 99.48 0.71 0.11 16 22 C -0.10 -0.25 9.61 22.37 0.22 -0.04 16 23 C 0.10 0.48 7.25 39.13 0.28 0.77 16 24 N -0.57 -1.23 4.79 -177.19 -0.85 -2.07 16 25 C -0.21 0.01 5.44 127.52 0.69 0.70 16 26 H 0.07 -0.30 7.96 -2.39 -0.02 -0.31 16 27 H 0.08 -0.50 7.96 -2.39 -0.02 -0.52 16 28 H 0.08 -0.56 7.96 -2.39 -0.02 -0.58 16 29 H 0.05 0.08 7.96 -2.39 -0.02 0.06 16 30 H 0.08 -0.23 7.96 -2.39 -0.02 -0.25 16 31 H 0.06 0.07 7.96 -2.39 -0.02 0.05 16 32 H 0.09 -0.93 7.99 -2.38 -0.02 -0.94 16 33 H 0.10 -1.05 7.99 -2.39 -0.02 -1.07 16 34 H 0.06 -0.45 7.79 -2.39 -0.02 -0.47 16 35 H 0.10 -1.21 8.14 -2.39 -0.02 -1.23 16 36 H 0.10 -0.79 8.11 -2.38 -0.02 -0.81 16 37 H 0.09 -0.40 4.04 -2.39 -0.01 -0.40 16 38 H 0.15 1.18 8.06 -2.91 -0.02 1.16 16 39 H 0.14 0.09 8.06 -2.91 -0.02 0.07 16 40 H 0.13 0.09 4.82 -2.91 -0.01 0.08 16 41 H 0.10 -0.69 7.96 -2.39 -0.02 -0.71 16 42 H 0.40 -4.37 8.74 -74.06 -0.65 -5.02 16 43 H 0.14 -0.24 8.06 -2.91 -0.02 -0.27 16 44 H 0.43 -1.54 5.56 -92.71 -0.52 -2.05 16 45 H 0.09 -0.26 8.00 -2.39 -0.02 -0.28 16 46 H 0.08 0.41 6.90 -2.39 -0.02 0.39 16 Total: 0.00 -20.70 365.12 4.31 -16.39 By element: Atomic # 1 Polarization: -11.48 SS G_CDS: 0.60 Total: -10.88 kcal Atomic # 6 Polarization: 10.49 SS G_CDS: 5.63 Total: 16.13 kcal Atomic # 7 Polarization: -2.38 SS G_CDS: -2.50 Total: -4.89 kcal Atomic # 8 Polarization: -8.61 SS G_CDS: -1.97 Total: -10.57 kcal Atomic # 14 Polarization: -8.72 SS G_CDS: 2.54 Total: -6.18 kcal Total: -20.70 4.31 -16.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_15766672_13158378.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.524 kcal (2) G-P(sol) polarization free energy of solvation -20.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds