Wall clock time and date at job start Thu Mar 4 2021 13:57:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86301 * 1 3 3 C 1.86296 * 109.99849 * 2 1 4 4 C 1.87455 * 110.01336 * 238.55066 * 2 1 3 5 5 C 1.53642 * 107.32707 * 287.41481 * 4 2 1 6 6 C 1.52500 * 110.12694 * 299.66558 * 5 4 2 7 7 N 1.46338 * 111.69096 * 71.26243 * 6 5 4 8 8 C 1.34774 * 120.53231 * 109.13264 * 7 6 5 9 9 O 1.21514 * 119.99931 * 352.34007 * 8 7 6 10 10 C 1.48168 * 120.00022 * 172.34056 * 8 7 6 11 11 C 1.39264 * 119.72420 * 170.63701 * 10 8 7 12 12 C 1.38634 * 119.06451 * 179.97438 * 11 10 8 13 13 C 1.38584 * 118.48417 * 359.97438 * 12 11 10 14 14 C 1.50708 * 120.32094 * 180.02562 * 13 12 11 15 15 O 1.42901 * 109.46982 * 65.00117 * 14 13 12 16 16 Si 1.86303 * 109.46974 * 184.99767 * 14 13 12 17 17 H 1.48498 * 109.46796 * 60.00331 * 16 14 13 18 18 H 1.48501 * 109.47089 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47134 * 300.00512 * 16 14 13 20 20 C 1.38600 * 119.35287 * 359.97438 * 13 12 11 21 21 N 1.31493 * 120.89968 * 359.72238 * 20 13 12 22 22 C 1.47799 * 118.93522 * 289.10577 * 7 6 5 23 23 H 1.09000 * 109.47049 * 298.65711 * 1 2 3 24 24 H 1.09001 * 109.47636 * 178.65371 * 1 2 3 25 25 H 1.09009 * 109.47094 * 58.65353 * 1 2 3 26 26 H 1.09006 * 109.47087 * 59.99506 * 3 2 1 27 27 H 1.08995 * 109.47382 * 179.97438 * 3 2 1 28 28 H 1.09000 * 109.47105 * 300.00077 * 3 2 1 29 29 H 1.09002 * 109.89018 * 46.87345 * 4 2 1 30 30 H 1.09002 * 109.88580 * 167.96271 * 4 2 1 31 31 H 1.08999 * 109.36520 * 179.46051 * 5 4 2 32 32 H 1.09008 * 109.36201 * 59.86512 * 5 4 2 33 33 H 1.09001 * 109.03493 * 310.69406 * 6 5 4 34 34 H 1.09000 * 109.03913 * 191.83807 * 6 5 4 35 35 H 1.08002 * 120.47183 * 0.02562 * 11 10 8 36 36 H 1.07996 * 120.76029 * 180.02562 * 12 11 10 37 37 H 1.08996 * 109.47375 * 305.00044 * 14 13 12 38 38 H 0.96704 * 114.00133 * 59.99776 * 15 14 13 39 39 H 1.08005 * 119.54811 * 180.02562 * 20 13 12 40 40 H 1.09002 * 110.07918 * 295.54740 * 22 7 6 41 41 H 1.08999 * 110.17062 * 173.98440 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.5001 1.7506 0.0000 4 6 2.5046 -0.9190 -1.5026 5 6 2.2487 -2.4156 -1.2674 6 6 2.9859 -2.8838 -0.0173 7 7 2.3716 -2.3572 1.2021 8 6 1.6954 -3.1726 2.0353 9 8 1.4720 -4.3223 1.7116 10 6 1.2245 -2.6672 3.3461 11 6 0.3632 -3.4441 4.1168 12 6 -0.0685 -2.9581 5.3412 13 6 0.3772 -1.7118 5.7520 14 6 -0.0656 -1.1438 7.0758 15 8 0.4439 -1.9547 8.1364 16 14 0.5843 0.5930 7.2548 17 1 0.0548 1.4357 6.1527 18 1 0.1486 1.1526 8.5596 19 1 2.0680 0.5750 7.1952 20 6 1.2349 -0.9935 4.9339 21 7 1.6334 -1.4810 3.7796 22 6 2.5050 -0.9169 1.5054 23 1 -0.3633 0.4928 0.9018 24 1 -0.3634 -1.0274 -0.0241 25 1 -0.3634 0.5346 -0.8777 26 1 2.1414 2.2678 0.8900 27 1 3.5900 1.7406 0.0005 28 1 2.1415 2.2678 -0.8900 29 1 1.9731 -0.5877 -2.3948 30 1 3.5734 -0.7394 -1.6187 31 1 2.6019 -2.9824 -2.1288 32 1 1.1792 -2.5838 -1.1405 33 1 4.0213 -2.5468 -0.0679 34 1 2.9695 -3.9731 0.0182 35 1 0.0368 -4.4120 3.7659 36 1 -0.7362 -3.5378 5.9613 37 1 -1.1546 -1.1305 7.1196 38 1 1.4090 -2.0120 8.1589 39 1 1.5845 -0.0220 5.2511 40 1 3.5517 -0.6662 1.6780 41 1 1.9096 -0.6606 2.3817 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_15766672_13287726.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 13:57:11 Heat of formation + Delta-G solvation = -44.289707 kcal Electronic energy + Delta-G solvation = -22207.825399 eV Core-core repulsion = 19019.155027 eV Total energy + Delta-G solvation = -3188.670371 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 294.131 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.05777 -40.39825 -37.89136 -37.36599 -34.44230 -33.28005 -32.84269 -29.39776 -28.41344 -28.25785 -27.61463 -26.24259 -24.98975 -23.74258 -22.54938 -20.84128 -18.82470 -18.49373 -17.84627 -17.08513 -16.78673 -16.66644 -16.21893 -16.10502 -15.37215 -15.13874 -14.90906 -14.66521 -14.58829 -14.27126 -14.09830 -13.88546 -13.87234 -13.71642 -13.25460 -13.20074 -13.09134 -12.96438 -12.54659 -12.16733 -12.13148 -12.10282 -11.91963 -11.62142 -11.36304 -11.05288 -10.84035 -10.52977 -10.48807 -10.29887 -9.97485 -9.19220 -0.61006 0.03157 1.14016 1.43674 1.48578 1.54166 1.68910 1.83610 1.88054 1.95320 2.11547 2.57965 2.62642 2.88714 3.42811 3.49299 3.56449 3.75799 3.93693 3.99489 4.06147 4.11076 4.40266 4.45508 4.61149 4.64750 4.67774 4.71007 4.73145 4.85107 4.86287 4.88081 4.88998 4.96920 4.99214 5.20306 5.21418 5.34629 5.44413 5.53279 5.64259 5.78167 6.17900 6.46497 6.65195 6.98632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.459 4.459 2 Si 1.037 2.963 3 C -0.445 4.445 4 C -0.411 4.411 5 C -0.122 4.122 6 C 0.097 3.903 7 N -0.570 5.570 8 C 0.554 3.446 9 O -0.576 6.576 10 C 0.065 3.935 11 C -0.117 4.117 12 C -0.045 4.045 13 C -0.142 4.142 14 C -0.076 4.076 15 O -0.548 6.548 16 Si 0.968 3.032 17 H -0.246 1.246 18 H -0.271 1.271 19 H -0.244 1.244 20 C 0.081 3.919 21 N -0.444 5.444 22 C -0.232 4.232 23 H 0.069 0.931 24 H 0.050 0.950 25 H 0.074 0.926 26 H 0.075 0.925 27 H 0.077 0.923 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.081 0.919 32 H 0.053 0.947 33 H 0.093 0.907 34 H 0.072 0.928 35 H 0.147 0.853 36 H 0.167 0.833 37 H 0.136 0.864 38 H 0.391 0.609 39 H 0.179 0.821 40 H 0.085 0.915 41 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.535 5.488 1.436 5.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.565 4.565 2 Si 1.230 2.770 3 C -0.554 4.554 4 C -0.497 4.497 5 C -0.160 4.160 6 C -0.025 4.025 7 N -0.299 5.299 8 C 0.342 3.658 9 O -0.456 6.456 10 C -0.071 4.071 11 C -0.138 4.138 12 C -0.071 4.071 13 C -0.144 4.144 14 C -0.187 4.187 15 O -0.355 6.355 16 Si 0.791 3.209 17 H -0.169 1.169 18 H -0.196 1.196 19 H -0.167 1.167 20 C -0.077 4.077 21 N -0.155 5.155 22 C -0.399 4.399 23 H 0.088 0.912 24 H 0.069 0.931 25 H 0.093 0.907 26 H 0.094 0.906 27 H 0.096 0.904 28 H 0.092 0.908 29 H 0.099 0.901 30 H 0.107 0.893 31 H 0.099 0.901 32 H 0.072 0.928 33 H 0.112 0.888 34 H 0.091 0.909 35 H 0.165 0.835 36 H 0.184 0.816 37 H 0.154 0.846 38 H 0.240 0.760 39 H 0.196 0.804 40 H 0.103 0.897 41 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 0.705 6.088 0.919 6.197 hybrid contribution -0.212 -1.286 0.195 1.317 sum 0.492 4.803 1.113 4.955 Atomic orbital electron populations 1.26270 1.22258 1.03340 1.04624 0.79191 0.65911 0.66536 0.65392 1.26014 1.06873 1.17515 1.04970 1.26341 1.07127 1.01294 1.14906 1.21457 1.00209 0.97314 0.97005 1.21551 0.97667 0.99945 0.83358 1.47781 1.51161 1.09768 1.21201 1.18300 0.78875 0.84791 0.83831 1.90758 1.58978 1.19502 1.76373 1.21122 0.98079 0.92380 0.95553 1.22285 0.95750 1.01073 0.94679 1.21767 0.96755 0.94621 0.93939 1.21762 0.97836 0.96132 0.98683 1.25048 1.05214 1.05401 0.83001 1.86533 1.27987 1.71877 1.49132 0.85407 0.80744 0.74090 0.80682 1.16900 1.19598 1.16709 1.23276 0.94195 1.00627 0.89638 1.67627 1.22499 1.11175 1.14238 1.28254 1.09003 0.83492 1.19111 0.91218 0.93064 0.90723 0.90628 0.90378 0.90788 0.90059 0.89299 0.90059 0.92824 0.88836 0.90911 0.83485 0.81563 0.84617 0.76013 0.80411 0.89692 0.83170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 0.28 8.65 113.37 0.98 1.26 16 2 Si 1.04 -4.53 11.99 68.60 0.82 -3.70 16 3 C -0.44 2.38 8.65 113.37 0.98 3.36 16 4 C -0.41 1.26 5.03 72.20 0.36 1.62 16 5 C -0.12 -0.08 5.68 30.64 0.17 0.09 16 6 C 0.10 0.29 5.75 86.24 0.50 0.78 16 7 N -0.57 -2.81 2.63 -628.68 -1.65 -4.47 16 8 C 0.55 5.57 7.65 86.88 0.66 6.23 16 9 O -0.58 -9.42 15.82 -3.76 -0.06 -9.48 16 10 C 0.06 0.40 6.58 41.89 0.28 0.67 16 11 C -0.12 -0.39 9.63 22.61 0.22 -0.17 16 12 C -0.05 0.07 9.83 22.45 0.22 0.29 16 13 C -0.14 0.46 5.37 -19.69 -0.11 0.35 16 14 C -0.08 0.47 2.82 71.24 0.20 0.67 16 15 O -0.55 2.24 12.84 -148.98 -1.91 0.33 16 16 Si 0.97 -5.98 25.16 68.60 1.73 -4.25 16 17 H -0.25 1.43 7.11 99.48 0.71 2.14 16 18 H -0.27 0.51 7.11 99.48 0.71 1.22 16 19 H -0.24 1.60 7.04 99.48 0.70 2.30 16 20 C 0.08 -0.15 9.84 84.83 0.83 0.68 16 21 N -0.44 -1.16 6.11 -184.91 -1.13 -2.29 16 22 C -0.23 0.07 4.89 127.52 0.62 0.70 16 23 H 0.07 -0.07 7.96 -2.39 -0.02 -0.09 16 24 H 0.05 0.15 7.96 -2.39 -0.02 0.13 16 25 H 0.07 -0.11 7.96 -2.38 -0.02 -0.13 16 26 H 0.07 -0.43 7.96 -2.38 -0.02 -0.45 16 27 H 0.08 -0.47 7.96 -2.39 -0.02 -0.49 16 28 H 0.07 -0.39 7.96 -2.39 -0.02 -0.40 16 29 H 0.08 -0.28 7.99 -2.39 -0.02 -0.30 16 30 H 0.09 -0.43 7.99 -2.39 -0.02 -0.45 16 31 H 0.08 -0.04 8.14 -2.39 -0.02 -0.06 16 32 H 0.05 0.18 7.90 -2.38 -0.02 0.16 16 33 H 0.09 -0.09 8.11 -2.39 -0.02 -0.11 16 34 H 0.07 0.50 7.07 -2.39 -0.02 0.48 16 35 H 0.15 0.55 7.67 -2.91 -0.02 0.53 16 36 H 0.17 -0.90 8.06 -2.91 -0.02 -0.93 16 37 H 0.14 -1.14 7.96 -2.39 -0.02 -1.16 16 38 H 0.39 -3.92 8.70 -74.05 -0.64 -4.56 16 39 H 0.18 -1.18 4.88 -2.91 -0.01 -1.19 16 40 H 0.08 -0.19 8.00 -2.39 -0.02 -0.21 16 41 H 0.15 0.04 3.90 -65.29 -0.25 -0.21 16 Total: 0.00 -15.72 330.32 4.61 -11.11 By element: Atomic # 1 Polarization: -4.68 SS G_CDS: 0.89 Total: -3.79 kcal Atomic # 6 Polarization: 10.61 SS G_CDS: 5.93 Total: 16.54 kcal Atomic # 7 Polarization: -3.97 SS G_CDS: -2.78 Total: -6.75 kcal Atomic # 8 Polarization: -7.17 SS G_CDS: -1.97 Total: -9.15 kcal Atomic # 14 Polarization: -10.50 SS G_CDS: 2.55 Total: -7.96 kcal Total: -15.72 4.61 -11.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_15766672_13287726.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.183 kcal (2) G-P(sol) polarization free energy of solvation -15.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -11.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds