Wall clock time and date at job start Thu Mar 4 2021 13:58:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86300 * 1 3 3 C 1.86305 * 110.07643 * 2 1 4 4 C 1.87462 * 110.01266 * 121.39624 * 2 1 3 5 5 C 1.53644 * 107.31979 * 72.58543 * 4 2 1 6 6 C 1.52507 * 110.12401 * 60.33984 * 5 4 2 7 7 N 1.46335 * 111.68948 * 288.72711 * 6 5 4 8 8 C 1.34779 * 120.53556 * 250.87677 * 7 6 5 9 9 O 1.21556 * 120.00264 * 176.01497 * 8 7 6 10 10 C 1.47840 * 119.99865 * 356.00563 * 8 7 6 11 11 C 1.39988 * 120.55968 * 229.39035 * 10 8 7 12 12 C 1.38399 * 118.28504 * 179.78687 * 11 10 8 13 13 C 1.50701 * 120.34756 * 180.25497 * 12 11 10 14 14 O 1.42897 * 109.47078 * 300.25979 * 13 12 11 15 15 Si 1.86302 * 109.47045 * 180.25795 * 13 12 11 16 16 H 1.48491 * 109.47291 * 60.00128 * 15 13 12 17 17 H 1.48505 * 109.46891 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47039 * 299.99715 * 15 13 12 19 19 C 1.38310 * 119.30378 * 0.50831 * 12 11 10 20 20 N 1.31954 * 121.08533 * 359.72648 * 19 12 11 21 21 C 1.31668 * 121.87934 * 0.02562 * 20 19 12 22 22 C 1.47790 * 118.93265 * 70.89744 * 7 6 5 23 23 H 1.09004 * 109.47366 * 298.60805 * 1 2 3 24 24 H 1.09004 * 109.47103 * 58.60271 * 1 2 3 25 25 H 1.09000 * 109.47258 * 178.60208 * 1 2 3 26 26 H 1.08995 * 109.47074 * 181.39474 * 3 2 1 27 27 H 1.08999 * 109.46849 * 301.39837 * 3 2 1 28 28 H 1.09005 * 109.46718 * 61.39404 * 3 2 1 29 29 H 1.09004 * 109.88181 * 192.03537 * 4 2 1 30 30 H 1.08998 * 109.88845 * 313.05525 * 4 2 1 31 31 H 1.09006 * 109.35896 * 180.53444 * 5 4 2 32 32 H 1.08993 * 109.36498 * 300.13555 * 5 4 2 33 33 H 1.09000 * 109.03728 * 49.30328 * 6 5 4 34 34 H 1.09011 * 109.03482 * 168.16178 * 6 5 4 35 35 H 1.07990 * 120.85879 * 359.97438 * 11 10 8 36 36 H 1.09001 * 109.46678 * 60.25900 * 13 12 11 37 37 H 0.96708 * 113.99625 * 299.99552 * 14 13 12 38 38 H 1.08007 * 119.45776 * 179.70462 * 19 12 11 39 39 H 1.07998 * 119.71850 * 179.97438 * 21 20 19 40 40 H 1.09003 * 110.08258 * 186.06301 * 22 7 6 41 41 H 1.08999 * 110.08326 * 64.45856 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.5025 1.7498 0.0000 4 6 2.5045 -0.9176 1.5035 5 6 2.2486 -2.4144 1.2695 6 6 2.9860 -2.8837 0.0198 7 7 2.3717 -2.3582 -1.2000 8 6 1.6954 -3.1744 -2.0326 9 8 1.1277 -2.7160 -3.0048 10 6 1.6443 -4.6272 -1.7635 11 6 1.9387 -5.5491 -2.7749 12 6 1.8807 -6.8979 -2.4700 13 6 2.1943 -7.9304 -3.5219 14 8 1.2883 -7.7849 -4.6173 15 14 2.0167 -9.6350 -2.7913 16 1 0.6246 -9.8250 -2.3108 17 1 2.3263 -10.6525 -3.8278 18 1 2.9584 -9.7862 -1.6531 19 6 1.5269 -7.2882 -1.1912 20 7 1.2498 -6.3965 -0.2589 21 6 1.2957 -5.1027 -0.4985 22 6 2.5050 -0.9182 -1.5045 23 1 -0.3634 0.4921 0.9022 24 1 -0.3633 0.5354 -0.8772 25 1 -0.3634 -1.0274 -0.0251 26 1 3.5921 1.7384 -0.0250 27 1 2.1244 2.2748 -0.8772 28 1 2.1651 2.2600 0.9023 29 1 3.5734 -0.7379 1.6193 30 1 1.9739 -0.5846 2.3955 31 1 2.6019 -2.9805 2.1315 32 1 1.1792 -2.5827 1.1428 33 1 4.0213 -2.5466 0.0702 34 1 2.9695 -3.9731 -0.0147 35 1 2.2071 -5.2165 -3.7666 36 1 3.2162 -7.7910 -3.8747 37 1 0.3584 -7.8965 -4.3761 38 1 1.4762 -8.3402 -0.9519 39 1 1.0617 -4.4034 0.2906 40 1 1.9085 -0.6641 -2.3807 41 1 3.5516 -0.6676 -1.6775 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_15766672_13287814.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 13:58:05 Heat of formation + Delta-G solvation = -58.913709 kcal Electronic energy + Delta-G solvation = -22083.406068 eV Core-core repulsion = 18894.101552 eV Total energy + Delta-G solvation = -3189.304516 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 294.131 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.10333 -40.43053 -37.98110 -37.58833 -33.84388 -33.41734 -33.27339 -29.42717 -28.42346 -28.19884 -27.37262 -26.86721 -24.95763 -23.62644 -22.71337 -20.44322 -18.92184 -18.42220 -18.12248 -17.72555 -17.12757 -16.46358 -16.36116 -15.82582 -15.37419 -15.03108 -14.85233 -14.78498 -14.47849 -14.31609 -14.13184 -13.97184 -13.86584 -13.53387 -13.40395 -13.21669 -13.11630 -12.98340 -12.74435 -12.18814 -12.14853 -12.08286 -12.02411 -11.68078 -11.30657 -11.08902 -10.83854 -10.60960 -10.57611 -10.36088 -10.17797 -9.38697 -0.50949 -0.07794 1.09715 1.38641 1.46898 1.50139 1.59007 1.74952 1.88979 1.91651 2.11506 2.45300 2.55921 3.05573 3.28613 3.38773 3.56331 3.62212 3.67328 3.89496 4.05881 4.13038 4.25057 4.44238 4.46220 4.54893 4.63446 4.71556 4.74129 4.77738 4.82058 4.83943 4.84647 4.87862 4.96763 5.03817 5.25632 5.28213 5.35572 5.48491 5.58583 5.63241 6.15533 6.57748 6.61903 6.91637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.466 4.466 2 Si 1.067 2.933 3 C -0.454 4.454 4 C -0.401 4.401 5 C -0.132 4.132 6 C 0.080 3.920 7 N -0.582 5.582 8 C 0.554 3.446 9 O -0.576 6.576 10 C -0.187 4.187 11 C -0.008 4.008 12 C -0.168 4.168 13 C -0.079 4.079 14 O -0.552 6.552 15 Si 0.981 3.019 16 H -0.247 1.247 17 H -0.269 1.269 18 H -0.244 1.244 19 C 0.110 3.890 20 N -0.489 5.489 21 C 0.134 3.866 22 C -0.207 4.207 23 H 0.078 0.922 24 H 0.059 0.941 25 H 0.055 0.945 26 H 0.078 0.922 27 H 0.066 0.934 28 H 0.077 0.923 29 H 0.093 0.907 30 H 0.090 0.910 31 H 0.098 0.902 32 H 0.066 0.934 33 H 0.097 0.903 34 H 0.089 0.911 35 H 0.141 0.859 36 H 0.132 0.868 37 H 0.390 0.610 38 H 0.173 0.827 39 H 0.183 0.817 40 H 0.079 0.921 41 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.248 -0.135 5.363 6.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.572 4.572 2 Si 1.257 2.743 3 C -0.563 4.563 4 C -0.489 4.489 5 C -0.170 4.170 6 C -0.041 4.041 7 N -0.312 5.312 8 C 0.342 3.658 9 O -0.456 6.456 10 C -0.193 4.193 11 C -0.034 4.034 12 C -0.170 4.170 13 C -0.189 4.189 14 O -0.359 6.359 15 Si 0.803 3.197 16 H -0.170 1.170 17 H -0.194 1.194 18 H -0.168 1.168 19 C -0.046 4.046 20 N -0.197 5.197 21 C -0.024 4.024 22 C -0.371 4.371 23 H 0.097 0.903 24 H 0.078 0.922 25 H 0.075 0.925 26 H 0.097 0.903 27 H 0.085 0.915 28 H 0.096 0.904 29 H 0.112 0.888 30 H 0.108 0.892 31 H 0.116 0.884 32 H 0.085 0.915 33 H 0.116 0.884 34 H 0.107 0.893 35 H 0.158 0.842 36 H 0.150 0.850 37 H 0.239 0.761 38 H 0.190 0.810 39 H 0.200 0.800 40 H 0.098 0.902 41 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 3.194 -0.911 5.688 6.587 hybrid contribution -0.398 0.735 -1.270 1.520 sum 2.796 -0.175 4.418 5.231 Atomic orbital electron populations 1.26358 1.22785 1.03642 1.04389 0.78788 0.65166 0.65773 0.64570 1.26132 1.07016 1.18284 1.04831 1.26179 1.07469 1.01260 1.13961 1.21639 1.00759 0.97422 0.97144 1.22025 0.98751 1.00412 0.82949 1.47902 1.52255 1.08654 1.22418 1.18406 0.79050 0.86086 0.82247 1.90785 1.46856 1.77218 1.30751 1.21000 1.07230 0.94012 0.97012 1.21543 0.91566 0.91808 0.98492 1.21447 1.02774 0.95599 0.97196 1.25124 0.97985 1.06223 0.89613 1.86520 1.20997 1.95012 1.33379 0.85233 0.81819 0.73720 0.78938 1.17034 1.19378 1.16797 1.23179 0.92446 1.00374 0.88605 1.67799 1.14359 1.02449 1.35046 1.23441 0.92108 0.92576 0.94238 1.27348 1.07320 0.85265 1.17178 0.90325 0.92204 0.92535 0.90252 0.91510 0.90358 0.88815 0.89165 0.88406 0.91520 0.88445 0.89276 0.84152 0.85043 0.76066 0.80990 0.79994 0.90250 0.89176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.47 0.49 8.65 113.37 0.98 1.47 16 2 Si 1.07 -6.66 11.99 68.60 0.82 -5.84 16 3 C -0.45 2.55 8.65 113.37 0.98 3.53 16 4 C -0.40 3.41 5.03 72.20 0.36 3.77 16 5 C -0.13 0.98 5.03 30.65 0.15 1.13 16 6 C 0.08 -0.40 5.00 86.25 0.43 0.03 16 7 N -0.58 -0.71 2.63 -629.01 -1.65 -2.37 16 8 C 0.55 4.28 7.27 86.78 0.63 4.91 16 9 O -0.58 -9.42 16.48 -3.89 -0.06 -9.48 16 10 C -0.19 -0.82 4.99 -19.99 -0.10 -0.92 16 11 C -0.01 -0.03 9.48 22.73 0.22 0.19 16 12 C -0.17 -0.03 5.39 -19.81 -0.11 -0.14 16 13 C -0.08 0.21 2.83 71.24 0.20 0.41 16 14 O -0.55 -0.05 12.77 -148.98 -1.90 -1.95 16 15 Si 0.98 -3.95 25.10 68.60 1.72 -2.22 16 16 H -0.25 0.98 7.11 99.48 0.71 1.69 16 17 H -0.27 0.06 7.11 99.48 0.71 0.77 16 18 H -0.24 1.02 7.11 99.48 0.71 1.72 16 19 C 0.11 0.04 9.84 84.69 0.83 0.87 16 20 N -0.49 -1.39 10.35 -194.75 -2.01 -3.40 16 21 C 0.13 0.20 8.58 85.04 0.73 0.93 16 22 C -0.21 0.07 5.44 127.52 0.69 0.77 16 23 H 0.08 -0.21 7.96 -2.38 -0.02 -0.23 16 24 H 0.06 0.07 7.96 -2.38 -0.02 0.05 16 25 H 0.06 0.07 7.96 -2.39 -0.02 0.05 16 26 H 0.08 -0.53 7.96 -2.39 -0.02 -0.55 16 27 H 0.07 -0.27 7.96 -2.39 -0.02 -0.29 16 28 H 0.08 -0.47 7.96 -2.38 -0.02 -0.49 16 29 H 0.09 -0.96 7.99 -2.39 -0.02 -0.98 16 30 H 0.09 -0.83 7.99 -2.39 -0.02 -0.85 16 31 H 0.10 -0.94 8.14 -2.38 -0.02 -0.96 16 32 H 0.07 -0.44 6.95 -2.39 -0.02 -0.46 16 33 H 0.10 -0.76 8.11 -2.39 -0.02 -0.78 16 34 H 0.09 -0.42 4.70 -2.38 -0.01 -0.43 16 35 H 0.14 0.67 8.06 -2.92 -0.02 0.65 16 36 H 0.13 -0.61 7.96 -2.39 -0.02 -0.63 16 37 H 0.39 -2.33 8.70 -74.05 -0.64 -2.98 16 38 H 0.17 -0.65 4.88 -2.91 -0.01 -0.66 16 39 H 0.18 -0.52 5.49 -2.91 -0.02 -0.54 16 40 H 0.08 0.39 6.90 -2.39 -0.02 0.37 16 41 H 0.09 -0.29 8.00 -2.39 -0.02 -0.31 16 Total: 0.00 -18.21 328.47 4.07 -14.14 By element: Atomic # 1 Polarization: -6.98 SS G_CDS: 1.15 Total: -5.83 kcal Atomic # 6 Polarization: 10.95 SS G_CDS: 6.01 Total: 16.96 kcal Atomic # 7 Polarization: -2.10 SS G_CDS: -3.67 Total: -5.77 kcal Atomic # 8 Polarization: -9.46 SS G_CDS: -1.97 Total: -11.43 kcal Atomic # 14 Polarization: -10.61 SS G_CDS: 2.54 Total: -8.06 kcal Total: -18.21 4.07 -14.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_15766672_13287814.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.778 kcal (2) G-P(sol) polarization free energy of solvation -18.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds