Wall clock time and date at job start Thu Mar 4 2021 13:58:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86293 * 1 3 3 C 1.86306 * 110.07927 * 2 1 4 4 C 1.87469 * 110.01493 * 121.39262 * 2 1 3 5 5 C 1.53648 * 107.32489 * 165.98422 * 4 2 1 6 6 C 1.52513 * 110.11933 * 299.66129 * 5 4 2 7 7 N 1.46343 * 111.68982 * 71.27020 * 6 5 4 8 8 C 1.34777 * 120.53395 * 109.12658 * 7 6 5 9 9 O 1.21589 * 119.99963 * 175.29764 * 8 7 6 10 10 C 1.47533 * 119.99869 * 355.29629 * 8 7 6 11 11 C 1.39670 * 120.19376 * 310.01982 * 10 8 7 12 12 C 1.37824 * 119.91173 * 179.97438 * 11 10 8 13 13 C 1.38509 * 120.30032 * 0.02562 * 12 11 10 14 14 C 1.50693 * 119.80700 * 179.97438 * 13 12 11 15 15 O 1.42901 * 109.47242 * 119.99990 * 14 13 12 16 16 Si 1.86300 * 109.47352 * 359.97438 * 14 13 12 17 17 H 1.48499 * 109.47074 * 60.00091 * 16 14 13 18 18 H 1.48500 * 109.47272 * 180.02562 * 16 14 13 19 19 H 1.48510 * 109.46936 * 300.00199 * 16 14 13 20 20 C 1.38103 * 120.38673 * 0.02562 * 13 12 11 21 21 C 1.38668 * 120.08510 * 359.67488 * 20 13 12 22 22 O 1.35652 * 120.15158 * 180.31739 * 21 20 13 23 23 C 1.47797 * 118.93324 * 289.09983 * 7 6 5 24 24 H 1.09005 * 109.47201 * 298.60769 * 1 2 3 25 25 H 1.08998 * 109.46977 * 58.60534 * 1 2 3 26 26 H 1.08994 * 109.47515 * 178.60878 * 1 2 3 27 27 H 1.08998 * 109.47518 * 181.39683 * 3 2 1 28 28 H 1.09007 * 109.46200 * 301.39299 * 3 2 1 29 29 H 1.09002 * 109.46898 * 61.38823 * 3 2 1 30 30 H 1.08998 * 109.88273 * 46.52960 * 4 2 1 31 31 H 1.09000 * 109.94412 * 285.47475 * 4 2 1 32 32 H 1.08998 * 109.36138 * 59.85842 * 5 4 2 33 33 H 1.08997 * 109.35865 * 179.46376 * 5 4 2 34 34 H 1.08996 * 109.03393 * 191.83536 * 6 5 4 35 35 H 1.08999 * 109.03649 * 310.69733 * 6 5 4 36 36 H 1.08006 * 120.04522 * 359.97438 * 11 10 8 37 37 H 1.08002 * 119.85521 * 180.02562 * 12 11 10 38 38 H 1.09003 * 109.46995 * 239.99547 * 14 13 12 39 39 H 0.96703 * 113.99533 * 299.99195 * 15 14 13 40 40 H 1.08001 * 119.95521 * 179.97438 * 20 13 12 41 41 H 0.96691 * 114.00379 * 270.28411 * 22 21 20 42 42 H 1.08997 * 110.07768 * 295.54797 * 23 7 6 43 43 H 1.08994 * 110.16976 * 173.98981 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8629 0.0000 0.0000 3 6 2.5026 1.7498 0.0000 4 6 2.5046 -0.9175 1.5036 5 6 3.9983 -1.1910 1.2698 6 6 4.1860 -2.0447 0.0200 7 7 3.9033 -1.2873 -1.1999 8 6 4.9020 -0.9325 -2.0324 9 8 4.6484 -0.3787 -3.0847 10 6 6.3030 -1.2160 -1.6669 11 6 6.7884 -0.8510 -0.4091 12 6 8.0980 -1.1192 -0.0735 13 6 8.9363 -1.7491 -0.9784 14 6 10.3664 -2.0364 -0.6001 15 8 10.6011 -3.4448 -0.6594 16 14 10.6857 -1.4254 1.1306 17 1 9.7747 -2.1188 2.0764 18 1 12.0952 -1.7079 1.5033 19 1 10.4420 0.0383 1.1917 20 6 8.4696 -2.1145 -2.2258 21 6 7.1531 -1.8580 -2.5779 22 8 6.6915 -2.2221 -3.8004 23 6 2.5050 -0.9183 -1.5045 24 1 -0.3634 0.4921 0.9022 25 1 -0.3633 0.5353 -0.8772 26 1 -0.3634 -1.0273 -0.0249 27 1 3.5922 1.7384 -0.0251 28 1 2.1244 2.2747 -0.8773 29 1 2.1651 2.2600 0.9022 30 1 1.9688 -1.8597 1.6195 31 1 2.3749 -0.3053 2.3961 32 1 4.5235 -0.2443 1.1429 33 1 4.4086 -1.7170 2.1317 34 1 5.2148 -2.4032 -0.0145 35 1 3.5139 -2.9014 0.0704 36 1 6.1384 -0.3592 0.2995 37 1 8.4723 -0.8369 0.8994 38 1 11.0352 -1.5271 -1.2940 39 1 10.0396 -3.9623 -0.0661 40 1 9.1295 -2.6049 -2.9261 41 1 6.8015 -1.5436 -4.4805 42 1 1.9104 -1.8153 -1.6773 43 1 2.4694 -0.2715 -2.3811 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_15766672_13422076.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 13:58:39 Heat of formation + Delta-G solvation = -114.718979 kcal Electronic energy + Delta-G solvation = -24389.083496 eV Core-core repulsion = 20944.102801 eV Total energy + Delta-G solvation = -3444.980695 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 309.135 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.83589 -40.08601 -38.56667 -37.57245 -37.00112 -33.36738 -32.93792 -31.18158 -29.43961 -28.46807 -28.37368 -27.29506 -26.06883 -23.97872 -23.17984 -22.64236 -20.56117 -19.29205 -18.59955 -18.29697 -17.49160 -17.10739 -16.52033 -16.20711 -16.07200 -15.98941 -15.41864 -15.33649 -14.77070 -14.71357 -14.48608 -14.13319 -13.99056 -13.93170 -13.85383 -13.48939 -13.29515 -13.20601 -13.12248 -13.00661 -12.91480 -12.38811 -12.20778 -12.10761 -12.04709 -11.97939 -11.60876 -11.46375 -11.01888 -10.81888 -10.50073 -10.35452 -10.00808 -9.84863 -9.33890 -0.32929 0.09682 1.17189 1.45040 1.50796 1.56253 1.63714 1.76995 1.89397 1.96118 2.12920 2.39931 2.55547 3.07857 3.29207 3.54510 3.57924 3.79078 3.93426 3.99738 4.10793 4.24000 4.39333 4.47067 4.48959 4.64553 4.65590 4.71714 4.74399 4.76101 4.81318 4.83155 4.87980 4.94629 5.00660 5.04732 5.11696 5.20600 5.28950 5.39736 5.48411 5.56210 5.59690 5.61706 6.24080 6.58474 6.69878 7.00921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.455 4.455 2 Si 1.064 2.936 3 C -0.462 4.462 4 C -0.401 4.401 5 C -0.130 4.130 6 C 0.083 3.917 7 N -0.586 5.586 8 C 0.554 3.446 9 O -0.580 6.580 10 C -0.169 4.169 11 C -0.065 4.065 12 C -0.137 4.137 13 C -0.077 4.077 14 C -0.087 4.087 15 O -0.551 6.551 16 Si 0.983 3.017 17 H -0.239 1.239 18 H -0.278 1.278 19 H -0.251 1.251 20 C -0.125 4.125 21 C 0.140 3.860 22 O -0.508 6.508 23 C -0.208 4.208 24 H 0.079 0.921 25 H 0.065 0.935 26 H 0.076 0.924 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.080 0.920 30 H 0.090 0.910 31 H 0.092 0.908 32 H 0.070 0.930 33 H 0.100 0.900 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.158 0.842 37 H 0.152 0.848 38 H 0.127 0.873 39 H 0.391 0.609 40 H 0.142 0.858 41 H 0.409 0.591 42 H 0.080 0.920 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.401 -0.115 7.665 7.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.564 4.564 2 Si 1.254 2.746 3 C -0.569 4.569 4 C -0.488 4.488 5 C -0.168 4.168 6 C -0.038 4.038 7 N -0.316 5.316 8 C 0.343 3.657 9 O -0.461 6.461 10 C -0.172 4.172 11 C -0.083 4.083 12 C -0.155 4.155 13 C -0.078 4.078 14 C -0.197 4.197 15 O -0.359 6.359 16 Si 0.806 3.194 17 H -0.162 1.162 18 H -0.204 1.204 19 H -0.175 1.175 20 C -0.144 4.144 21 C 0.095 3.905 22 O -0.322 6.322 23 C -0.372 4.372 24 H 0.098 0.902 25 H 0.084 0.916 26 H 0.095 0.905 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.099 0.901 30 H 0.109 0.891 31 H 0.111 0.889 32 H 0.089 0.911 33 H 0.118 0.882 34 H 0.109 0.891 35 H 0.107 0.893 36 H 0.175 0.825 37 H 0.169 0.831 38 H 0.145 0.855 39 H 0.240 0.760 40 H 0.160 0.840 41 H 0.269 0.731 42 H 0.098 0.902 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -0.105 0.108 7.731 7.733 hybrid contribution -0.397 0.116 -1.248 1.314 sum -0.502 0.224 6.483 6.507 Atomic orbital electron populations 1.26144 1.20255 1.05093 1.04864 0.78835 0.65998 0.65231 0.64494 1.26299 1.05893 1.20143 1.04519 1.26166 0.99833 1.09004 1.13827 1.21676 0.97403 1.00616 0.97084 1.21929 1.03770 0.95034 0.83099 1.47909 1.06252 1.54717 1.22760 1.18511 0.85742 0.78343 0.83059 1.90732 1.84928 1.45154 1.25264 1.20351 0.94160 1.05213 0.97516 1.21496 0.96295 0.96874 0.93663 1.21231 0.93400 1.00370 1.00452 1.20558 0.97098 0.96798 0.93347 1.25221 0.93518 0.86636 1.14308 1.86517 1.64719 1.16186 1.68447 0.85201 0.79850 0.80312 0.74010 1.16173 1.20364 1.17523 1.21311 0.93667 1.01363 0.98038 1.18647 0.91054 0.94618 0.86214 1.84647 1.84027 1.45278 1.18201 1.27402 0.84568 1.07991 1.17265 0.90180 0.91575 0.90482 0.92215 0.92215 0.90068 0.89114 0.88894 0.91122 0.88185 0.89103 0.89287 0.82465 0.83063 0.85525 0.75974 0.83989 0.73076 0.90158 0.90635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 2.24 8.65 113.37 0.98 3.22 16 2 Si 1.06 -6.10 11.99 68.60 0.82 -5.28 16 3 C -0.46 0.82 8.65 113.37 0.98 1.80 16 4 C -0.40 3.39 5.02 72.20 0.36 3.75 16 5 C -0.13 1.02 5.17 30.65 0.16 1.18 16 6 C 0.08 -0.30 4.99 86.25 0.43 0.13 16 7 N -0.59 -1.85 2.63 -629.33 -1.65 -3.51 16 8 C 0.55 5.26 6.92 86.69 0.60 5.86 16 9 O -0.58 -10.11 16.04 3.59 0.06 -10.05 16 10 C -0.17 -0.87 4.73 -20.01 -0.09 -0.97 16 11 C -0.07 0.08 7.66 22.52 0.17 0.25 16 12 C -0.14 0.45 8.65 22.24 0.19 0.64 16 13 C -0.08 0.12 5.39 -19.83 -0.11 0.01 16 14 C -0.09 0.33 2.81 71.23 0.20 0.53 16 15 O -0.55 1.02 12.76 -148.98 -1.90 -0.88 16 16 Si 0.98 -4.95 25.05 68.60 1.72 -3.23 16 17 H -0.24 1.57 7.11 99.48 0.71 2.28 16 18 H -0.28 0.14 7.11 99.48 0.71 0.84 16 19 H -0.25 1.13 7.11 99.48 0.71 1.83 16 20 C -0.13 -0.26 9.53 22.34 0.21 -0.05 16 21 C 0.14 0.84 6.70 22.84 0.15 1.00 16 22 O -0.51 -4.21 12.59 -82.09 -1.03 -5.24 16 23 C -0.21 -0.36 5.42 127.52 0.69 0.34 16 24 H 0.08 -0.46 7.96 -2.38 -0.02 -0.48 16 25 H 0.07 -0.22 7.96 -2.39 -0.02 -0.24 16 26 H 0.08 -0.43 7.96 -2.39 -0.02 -0.45 16 27 H 0.06 0.00 7.96 -2.39 -0.02 -0.02 16 28 H 0.06 0.03 7.96 -2.38 -0.02 0.02 16 29 H 0.08 -0.31 7.96 -2.39 -0.02 -0.33 16 30 H 0.09 -0.87 7.99 -2.39 -0.02 -0.89 16 31 H 0.09 -0.91 7.99 -2.39 -0.02 -0.93 16 32 H 0.07 -0.57 6.21 -2.39 -0.01 -0.58 16 33 H 0.10 -1.09 8.14 -2.39 -0.02 -1.11 16 34 H 0.09 -0.34 5.34 -2.39 -0.01 -0.35 16 35 H 0.09 -0.49 8.11 -2.39 -0.02 -0.51 16 36 H 0.16 -0.88 5.31 -2.91 -0.02 -0.89 16 37 H 0.15 -1.19 4.85 -2.91 -0.01 -1.20 16 38 H 0.13 -0.62 7.96 -2.39 -0.02 -0.64 16 39 H 0.39 -3.36 8.70 -74.06 -0.64 -4.00 16 40 H 0.14 0.21 8.06 -2.91 -0.02 0.19 16 41 H 0.41 1.06 9.06 -74.06 -0.67 0.39 16 42 H 0.08 0.00 8.00 -2.39 -0.02 -0.02 16 43 H 0.07 0.52 6.94 -2.39 -0.02 0.51 16 Total: 0.00 -20.52 343.12 3.42 -17.10 By element: Atomic # 1 Polarization: -7.07 SS G_CDS: 0.48 Total: -6.59 kcal Atomic # 6 Polarization: 12.75 SS G_CDS: 4.93 Total: 17.68 kcal Atomic # 7 Polarization: -1.85 SS G_CDS: -1.65 Total: -3.51 kcal Atomic # 8 Polarization: -13.30 SS G_CDS: -2.88 Total: -16.17 kcal Atomic # 14 Polarization: -11.05 SS G_CDS: 2.54 Total: -8.51 kcal Total: -20.52 3.42 -17.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_15766672_13422076.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.619 kcal (2) G-P(sol) polarization free energy of solvation -20.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds