Wall clock time and date at job start Thu Mar 4 2021 14:05:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37871 * 126.45929 * 2 1 4 4 C 1.46680 * 126.22783 * 359.95733 * 3 2 1 5 5 O 1.21694 * 120.00436 * 324.55311 * 4 3 2 6 6 N 1.34776 * 119.99661 * 144.54705 * 4 3 2 7 7 C 1.46344 * 120.53569 * 354.49322 * 6 4 3 8 8 C 1.52510 * 111.69011 * 109.12113 * 7 6 4 9 9 C 1.53642 * 110.12158 * 71.27316 * 8 7 6 10 10 Si 1.87469 * 107.32212 * 299.65521 * 9 8 7 11 11 C 1.86305 * 110.01385 * 165.98359 * 10 9 8 12 12 C 1.86300 * 110.01564 * 287.41901 * 10 9 8 13 13 C 1.47791 * 120.53405 * 174.50640 * 6 4 3 14 14 N 1.37647 * 107.53735 * 179.69799 * 3 2 1 15 15 C 1.35534 * 108.64305 * 0.26183 * 14 3 2 16 16 C 1.50700 * 125.56499 * 179.97438 * 15 14 3 17 17 O 1.42895 * 109.47051 * 299.99978 * 16 15 14 18 18 Si 1.86300 * 109.47147 * 180.02562 * 16 15 14 19 19 H 1.48505 * 109.47281 * 180.02562 * 18 16 15 20 20 H 1.48504 * 109.47210 * 299.99978 * 18 16 15 21 21 H 1.48504 * 109.47241 * 60.00026 * 18 16 15 22 22 C 1.35457 * 108.87286 * 359.97438 * 15 14 3 23 23 H 1.08996 * 109.46850 * 90.00740 * 1 2 3 24 24 H 1.09001 * 109.46866 * 210.00305 * 1 2 3 25 25 H 1.08991 * 109.46913 * 330.00351 * 1 2 3 26 26 H 1.09002 * 109.03449 * 348.55574 * 7 6 4 27 27 H 1.08995 * 109.03620 * 229.69291 * 7 6 4 28 28 H 1.08998 * 109.36499 * 311.06579 * 8 7 6 29 29 H 1.09002 * 109.35854 * 191.46573 * 8 7 6 30 30 H 1.08997 * 109.89151 * 59.11088 * 9 8 7 31 31 H 1.09001 * 109.88466 * 180.13163 * 9 8 7 32 32 H 1.09002 * 109.46923 * 60.00214 * 11 10 9 33 33 H 1.08992 * 109.47113 * 179.97438 * 11 10 9 34 34 H 1.09000 * 109.47114 * 300.00502 * 11 10 9 35 35 H 1.08994 * 109.47150 * 59.99838 * 12 10 9 36 36 H 1.08993 * 109.47151 * 179.97438 * 12 10 9 37 37 H 1.09004 * 109.46809 * 299.99679 * 12 10 9 38 38 H 1.09001 * 110.07882 * 115.52142 * 13 6 4 39 39 H 1.08999 * 110.07953 * 353.92502 * 13 6 4 40 40 H 0.96997 * 125.68156 * 180.23915 * 14 3 2 41 41 H 1.09004 * 109.46890 * 60.00506 * 16 15 14 42 42 H 0.96700 * 113.99750 * 179.97438 * 17 16 15 43 43 H 1.08002 * 126.06842 * 179.97438 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3263 1.1089 0.0000 4 6 1.8898 2.5092 -0.0009 5 8 0.8895 2.8344 -0.6128 6 7 2.5966 3.4358 0.6762 7 6 3.7305 3.0409 1.5129 8 6 5.0594 3.4721 0.9014 9 6 5.2157 4.9975 0.9984 10 14 3.7947 5.7658 0.0470 11 6 3.6586 7.5780 0.4572 12 6 4.0585 5.5425 -1.7837 13 6 2.2390 4.8669 0.5858 14 7 3.6284 0.6625 0.0069 15 6 3.6218 -0.6928 0.0053 16 6 4.8434 -1.5753 0.0107 17 8 5.6301 -1.3067 -1.1516 18 14 4.3183 -3.3627 0.0050 19 1 5.5221 -4.2324 0.0109 20 1 3.5004 -3.6422 1.2126 21 1 3.5139 -3.6385 -1.2125 22 6 2.3380 -1.1247 -0.0020 23 1 -0.3633 -0.0001 -1.0276 24 1 -0.3633 -0.8900 0.5139 25 1 -0.3633 0.8900 0.5137 26 1 3.7271 1.9570 1.6278 27 1 3.6249 3.5015 2.4951 28 1 5.0898 3.1715 -0.1459 29 1 5.8771 2.9904 1.4375 30 1 5.1743 5.3089 2.0421 31 1 6.1654 5.3017 0.5583 32 1 4.5860 8.0826 0.1860 33 1 2.8308 8.0156 -0.1006 34 1 3.4799 7.6961 1.5260 35 1 4.1120 4.4790 -2.0160 36 1 3.2278 5.9917 -2.3279 37 1 4.9900 6.0261 -2.0781 38 1 1.9131 5.2333 1.5592 39 1 1.4497 5.0094 -0.1524 40 1 4.4191 1.2244 0.0118 41 1 5.4341 -1.3726 0.9041 42 1 6.4344 -1.8399 -1.2139 43 1 2.0137 -2.1549 -0.0053 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_15766672_13940406.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 14:05:57 Heat of formation + Delta-G solvation = -57.312285 kcal Electronic energy + Delta-G solvation = -23066.483628 eV Core-core repulsion = 19849.937077 eV Total energy + Delta-G solvation = -3216.546551 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 296.147 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.76949 -40.40503 -37.71156 -37.65296 -33.68209 -33.45106 -31.99921 -29.46882 -28.51301 -28.41181 -28.19398 -27.19971 -25.50851 -23.01809 -21.60910 -21.55943 -19.99769 -18.91428 -18.50671 -17.55771 -16.89827 -16.50768 -16.14873 -15.64616 -15.36246 -15.09247 -14.91304 -14.64587 -14.36910 -14.22738 -14.02020 -13.98437 -13.89843 -13.65302 -13.52884 -13.34906 -13.25765 -13.18379 -13.09759 -12.98433 -12.54041 -12.19575 -12.15163 -11.98508 -11.92537 -11.64091 -11.14598 -10.86713 -10.48124 -10.42167 -9.85891 -9.52987 -9.10776 0.35209 1.06807 1.41712 1.51901 1.57273 1.63084 1.70049 1.83552 1.86523 1.99177 2.06867 2.38117 2.52206 3.32327 3.48246 3.78504 3.84570 3.97123 4.03865 4.15519 4.32518 4.42547 4.44621 4.55763 4.60926 4.64789 4.68307 4.73441 4.77792 4.79253 4.80781 4.83455 4.93263 4.93612 5.06410 5.15346 5.22262 5.32170 5.42439 5.51414 5.60448 5.63176 5.78550 6.18266 6.35509 6.76448 6.97168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.097 4.097 3 C -0.064 4.064 4 C 0.577 3.423 5 O -0.569 6.569 6 N -0.590 5.590 7 C 0.077 3.923 8 C -0.135 4.135 9 C -0.398 4.398 10 Si 1.065 2.935 11 C -0.452 4.452 12 C -0.467 4.467 13 C -0.206 4.206 14 N -0.513 5.513 15 C 0.065 3.935 16 C -0.065 4.065 17 O -0.566 6.566 18 Si 1.001 2.999 19 H -0.246 1.246 20 H -0.255 1.255 21 H -0.277 1.277 22 C -0.217 4.217 23 H 0.064 0.936 24 H 0.084 0.916 25 H 0.051 0.949 26 H 0.086 0.914 27 H 0.100 0.900 28 H 0.059 0.941 29 H 0.103 0.897 30 H 0.096 0.904 31 H 0.092 0.908 32 H 0.079 0.921 33 H 0.066 0.934 34 H 0.080 0.920 35 H 0.051 0.949 36 H 0.059 0.941 37 H 0.079 0.921 38 H 0.087 0.913 39 H 0.077 0.923 40 H 0.428 0.572 41 H 0.111 0.889 42 H 0.405 0.595 43 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.064 -0.441 4.912 9.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.106 4.106 3 C -0.177 4.177 4 C 0.367 3.633 5 O -0.448 6.448 6 N -0.321 5.321 7 C -0.045 4.045 8 C -0.173 4.173 9 C -0.486 4.486 10 Si 1.256 2.744 11 C -0.561 4.561 12 C -0.573 4.573 13 C -0.371 4.371 14 N -0.113 5.113 15 C -0.053 4.053 16 C -0.174 4.174 17 O -0.376 6.376 18 Si 0.823 3.177 19 H -0.169 1.169 20 H -0.179 1.179 21 H -0.202 1.202 22 C -0.241 4.241 23 H 0.083 0.917 24 H 0.103 0.897 25 H 0.070 0.930 26 H 0.104 0.896 27 H 0.118 0.882 28 H 0.077 0.923 29 H 0.121 0.879 30 H 0.115 0.885 31 H 0.111 0.889 32 H 0.098 0.902 33 H 0.085 0.915 34 H 0.099 0.901 35 H 0.070 0.930 36 H 0.079 0.921 37 H 0.099 0.901 38 H 0.106 0.894 39 H 0.096 0.904 40 H 0.270 0.730 41 H 0.129 0.871 42 H 0.256 0.744 43 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 6.908 -0.576 4.481 8.254 hybrid contribution 0.291 0.331 -0.290 0.527 sum 7.199 -0.245 4.191 8.333 Atomic orbital electron populations 1.20217 0.89132 1.02427 1.02185 1.20078 0.96264 0.91157 1.03077 1.20079 0.84634 0.93151 1.19834 1.17422 0.82873 0.83728 0.79326 1.90795 1.27134 1.80772 1.46129 1.47920 1.30739 1.06737 1.46752 1.22026 0.85184 1.02028 0.95263 1.21688 0.96473 0.97815 1.01327 1.26138 1.13306 0.99486 1.09669 0.78816 0.64316 0.65917 0.65386 1.26101 1.05078 1.18928 1.05977 1.26378 1.04970 1.03592 1.22332 1.27400 1.17629 0.85229 1.06798 1.42189 1.06809 1.06667 1.55609 1.20302 0.95783 0.83008 1.06202 1.24598 0.91788 1.08777 0.92254 1.86451 1.40597 1.67864 1.42711 0.84930 0.80428 0.72027 0.80287 1.16934 1.17882 1.20179 1.20714 0.91230 0.99271 1.12907 0.91685 0.89736 0.92982 0.89557 0.88167 0.92273 0.87852 0.88499 0.88909 0.90191 0.91469 0.90138 0.92986 0.92135 0.90148 0.89429 0.90443 0.72994 0.87142 0.74357 0.82704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.69 9.78 71.24 0.70 0.00 16 2 C -0.10 -0.93 6.20 -19.56 -0.12 -1.05 16 3 C -0.06 -0.57 5.98 40.35 0.24 -0.33 16 4 C 0.58 6.55 7.39 86.45 0.64 7.19 16 5 O -0.57 -10.95 15.56 -4.33 -0.07 -11.02 16 6 N -0.59 -2.14 2.63 -630.20 -1.66 -3.80 16 7 C 0.08 -0.28 5.09 86.25 0.44 0.16 16 8 C -0.13 0.97 4.89 30.65 0.15 1.12 16 9 C -0.40 3.32 5.02 72.20 0.36 3.68 16 10 Si 1.07 -5.70 11.99 68.60 0.82 -4.88 16 11 C -0.45 2.35 8.65 113.37 0.98 3.33 16 12 C -0.47 -0.05 8.65 113.37 0.98 0.93 16 13 C -0.21 -0.31 5.42 127.52 0.69 0.38 16 14 N -0.51 -1.58 4.68 -171.93 -0.80 -2.38 16 15 C 0.07 0.18 6.51 41.34 0.27 0.45 16 16 C -0.06 0.27 3.07 71.24 0.22 0.48 16 17 O -0.57 1.92 12.85 -148.98 -1.92 0.00 16 18 Si 1.00 -3.55 25.82 68.60 1.77 -1.78 16 19 H -0.25 1.24 7.11 99.48 0.71 1.94 16 20 H -0.26 0.53 7.11 99.48 0.71 1.24 16 21 H -0.28 -0.54 7.11 99.48 0.71 0.17 16 22 C -0.22 -1.24 9.27 22.01 0.20 -1.04 16 23 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 24 H 0.08 0.32 8.14 -2.39 -0.02 0.30 16 25 H 0.05 0.57 7.56 -2.39 -0.02 0.55 16 26 H 0.09 -0.27 5.06 -2.39 -0.01 -0.29 16 27 H 0.10 -0.66 8.11 -2.39 -0.02 -0.68 16 28 H 0.06 -0.33 7.16 -2.39 -0.02 -0.35 16 29 H 0.10 -1.13 8.14 -2.39 -0.02 -1.15 16 30 H 0.10 -1.01 7.99 -2.39 -0.02 -1.02 16 31 H 0.09 -0.87 7.99 -2.39 -0.02 -0.89 16 32 H 0.08 -0.47 7.96 -2.39 -0.02 -0.49 16 33 H 0.07 -0.24 7.96 -2.39 -0.02 -0.26 16 34 H 0.08 -0.51 7.96 -2.39 -0.02 -0.53 16 35 H 0.05 0.16 7.96 -2.39 -0.02 0.14 16 36 H 0.06 0.14 7.96 -2.39 -0.02 0.12 16 37 H 0.08 -0.16 7.96 -2.38 -0.02 -0.18 16 38 H 0.09 -0.11 8.00 -2.39 -0.02 -0.13 16 39 H 0.08 0.53 6.94 -2.39 -0.02 0.51 16 40 H 0.43 -0.68 6.05 -92.71 -0.56 -1.24 16 41 H 0.11 -1.14 7.96 -2.39 -0.02 -1.16 16 42 H 0.40 -5.22 8.74 -74.06 -0.65 -5.87 16 43 H 0.16 0.38 6.17 -2.91 -0.02 0.36 16 Total: 0.00 -21.32 340.69 4.47 -16.85 By element: Atomic # 1 Polarization: -8.87 SS G_CDS: 0.56 Total: -8.31 kcal Atomic # 6 Polarization: 9.57 SS G_CDS: 5.75 Total: 15.32 kcal Atomic # 7 Polarization: -3.72 SS G_CDS: -2.46 Total: -6.18 kcal Atomic # 8 Polarization: -9.04 SS G_CDS: -1.98 Total: -11.02 kcal Atomic # 14 Polarization: -9.26 SS G_CDS: 2.59 Total: -6.66 kcal Total: -21.32 4.47 -16.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_15766672_13940406.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.462 kcal (2) G-P(sol) polarization free energy of solvation -21.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds