Wall clock time and date at job start Thu Mar 4 2021 14:25:02
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= 0
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 Si 1.86307 * 1
3 3 C 1.86301 * 110.07638 * 2 1
4 4 C 1.87464 * 110.01049 * 238.60647 * 2 1 3
5 5 C 1.53649 * 107.32123 * 194.01807 * 4 2 1
6 6 C 1.52011 * 110.16581 * 60.23744 * 5 4 2
7 7 N 1.46333 * 111.97552 * 288.87424 * 6 5 4
8 8 C 1.34781 * 120.53334 * 250.94096 * 7 6 5
9 9 O 1.21636 * 119.99874 * 185.88951 * 8 7 6
10 10 C 1.47182 * 119.99649 * 5.88719 * 8 7 6
11 11 C 1.36016 * 123.46010 * 211.69020 * 10 8 7
12 12 S 1.70452 * 110.81660 * 180.02562 * 11 10 8
13 13 C 1.75497 * 92.44538 * 359.97438 * 12 11 10
14 14 C 1.50699 * 124.71272 * 179.97438 * 13 12 11
15 15 O 1.42908 * 109.47276 * 120.02398 * 14 13 12
16 16 Si 1.86306 * 109.47087 * 0.03041 * 14 13 12
17 17 H 1.48500 * 109.46916 * 299.99751 * 16 14 13
18 18 H 1.48496 * 109.47003 * 179.97438 * 16 14 13
19 19 H 1.48501 * 109.46950 * 59.99685 * 16 14 13
20 20 C 1.32769 * 110.57810 * 0.24745 * 13 12 11
21 21 C 1.47792 * 118.93390 * 70.66776 * 7 6 5
22 22 H 1.08999 * 109.46647 * 298.60115 * 1 2 3
23 23 H 1.09002 * 109.47111 * 58.59643 * 1 2 3
24 24 H 1.09001 * 109.47223 * 178.60427 * 1 2 3
25 25 H 1.09000 * 109.46990 * 181.39964 * 3 2 1
26 26 H 1.09000 * 109.47116 * 301.39648 * 3 2 1
27 27 H 1.08998 * 109.46967 * 61.39714 * 3 2 1
28 28 H 1.08994 * 109.88983 * 313.46840 * 4 2 1
29 29 H 1.09003 * 109.88813 * 74.49254 * 4 2 1
30 30 H 1.08998 * 109.36254 * 180.53828 * 5 4 2
31 31 H 1.09005 * 109.36083 * 300.13878 * 5 4 2
32 32 H 1.09007 * 108.86931 * 168.22949 * 6 5 4
33 33 H 1.08999 * 108.90813 * 49.54420 * 6 5 4
34 34 H 1.08000 * 124.58724 * 0.03390 * 11 10 8
35 35 H 1.08995 * 109.47596 * 240.02681 * 14 13 12
36 36 H 0.96698 * 114.00045 * 180.02562 * 15 14 13
37 37 H 1.07998 * 123.46167 * 179.75539 * 20 13 12
38 38 H 1.09002 * 110.08260 * 64.70984 * 21 7 6
39 39 H 1.09004 * 110.07783 * 186.20752 * 21 7 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 14 1.8631 0.0000 0.0000
3 6 2.5026 1.7498 0.0000
4 6 2.5046 -0.9176 -1.5036
5 6 3.9983 -1.1911 -1.2697
6 6 4.1867 -2.0399 -0.0228
7 7 3.9034 -1.2874 1.1998
8 6 4.9022 -0.9318 2.0319
9 8 4.6472 -0.4015 3.0965
10 6 6.3015 -1.1852 1.6524
11 6 7.2845 -1.4597 2.5515
12 16 8.7771 -1.6975 1.7635
13 6 8.0706 -1.4231 0.1806
14 6 8.8323 -1.4697 -1.1189
15 8 8.2761 -2.4813 -1.9612
16 14 10.6213 -1.8615 -0.7764
17 1 11.1994 -0.8103 0.0988
18 1 11.3717 -1.9080 -2.0570
19 1 10.7184 -3.1790 -0.0982
20 6 6.7731 -1.1630 0.2874
21 6 2.5051 -0.9183 1.5044
22 1 -0.3632 0.4920 0.9023
23 1 -0.3633 0.5355 -0.8771
24 1 -0.3634 -1.0274 -0.0250
25 1 3.5922 1.7384 -0.0251
26 1 2.1245 2.2748 -0.8772
27 1 2.1652 2.2599 0.9022
28 1 1.9689 -1.8597 -1.6195
29 1 2.3739 -0.3048 -2.3956
30 1 4.4086 -1.7171 -2.1317
31 1 4.5235 -0.2444 -1.1430
32 1 5.2166 -2.3957 0.0091
33 1 3.5170 -2.8982 -0.0753
34 1 7.1389 -1.5190 3.6200
35 1 8.7610 -0.5027 -1.6168
36 1 8.7184 -2.5679 -2.8167
37 1 6.1350 -0.9584 -0.5596
38 1 1.9104 -1.8153 1.6773
39 1 2.4712 -0.2724 2.3818
RHF calculation, no. of doubly occupied orbitals= 50
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
m_22_15766672_6894386.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Thu Mar 4 2021 14:25:02
Heat of formation + Delta-G solvation = -60.662761 kcal
Electronic energy + Delta-G solvation = -20798.598084 eV
Core-core repulsion = 17763.795881 eV
Total energy + Delta-G solvation = -3034.802203 eV
No. of doubly occupied orbitals = 50
Molecular weight
(most abundant/longest-lived isotopes) = 299.092 amu
Computer time = 0.57 seconds
Orbital eigenvalues (eV)
-41.35293 -38.70798 -37.58182 -37.12446 -33.38290 -31.91459 -29.51940 -28.54604
-28.37837 -27.02251 -26.71143 -24.44407 -22.55892 -21.34219 -19.83395 -18.88897
-18.34912 -17.65939 -17.31735 -16.38707 -16.35979 -15.75016 -15.43794 -14.86549
-14.75094 -14.53455 -14.21805 -14.09679 -13.94344 -13.88364 -13.72550 -13.53977
-13.42236 -13.21420 -13.10625 -12.95257 -12.63466 -12.35018 -12.15977 -12.05656
-12.02007 -11.87533 -11.56462 -11.03275 -10.80350 -10.43270 -10.34015 -9.93646
-9.57971 -9.26611 -0.33762 0.27907 0.63372 0.82272 1.12085 1.45423
1.47392 1.62449 1.80826 1.90030 1.91256 1.99995 2.25178 2.56905
3.29368 3.61654 3.76192 3.92508 4.07421 4.12475 4.28949 4.44992
4.48935 4.51172 4.66428 4.72132 4.74504 4.78525 4.83058 4.85048
4.86571 4.95023 4.97301 5.07996 5.14735 5.29380 5.42465 5.49519
5.60034 5.63367 6.26523 6.83347 7.03435
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.453 4.453
2 Si 1.063 2.937
3 C -0.464 4.464
4 C -0.399 4.399
5 C -0.131 4.131
6 C 0.078 3.922
7 N -0.583 5.583
8 C 0.566 3.434
9 O -0.588 6.588
10 C -0.176 4.176
11 C -0.189 4.189
12 S 0.192 5.808
13 C -0.201 4.201
14 C -0.033 4.033
15 O -0.554 6.554
16 Si 0.900 3.100
17 H -0.244 1.244
18 H -0.215 1.215
19 H -0.254 1.254
20 C -0.089 4.089
21 C -0.208 4.208
22 H 0.066 0.934
23 H 0.079 0.921
24 H 0.078 0.922
25 H 0.057 0.943
26 H 0.080 0.920
27 H 0.058 0.942
28 H 0.092 0.908
29 H 0.092 0.908
30 H 0.099 0.901
31 H 0.067 0.933
32 H 0.097 0.903
33 H 0.090 0.910
34 H 0.172 0.828
35 H 0.113 0.887
36 H 0.403 0.597
37 H 0.179 0.821
38 H 0.083 0.917
39 H 0.075 0.925
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.957 -1.244 -8.248 8.396
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.561 4.561
2 Si 1.253 2.747
3 C -0.570 4.570
4 C -0.487 4.487
5 C -0.169 4.169
6 C -0.044 4.044
7 N -0.314 5.314
8 C 0.354 3.646
9 O -0.470 6.470
10 C -0.194 4.194
11 C -0.327 4.327
12 S 0.459 5.541
13 C -0.317 4.317
14 C -0.146 4.146
15 O -0.364 6.364
16 Si 0.721 3.279
17 H -0.167 1.167
18 H -0.137 1.137
19 H -0.178 1.178
20 C -0.118 4.118
21 C -0.372 4.372
22 H 0.085 0.915
23 H 0.098 0.902
24 H 0.097 0.903
25 H 0.076 0.924
26 H 0.099 0.901
27 H 0.077 0.923
28 H 0.110 0.890
29 H 0.111 0.889
30 H 0.117 0.883
31 H 0.085 0.915
32 H 0.115 0.885
33 H 0.109 0.891
34 H 0.190 0.810
35 H 0.130 0.870
36 H 0.254 0.746
37 H 0.196 0.804
38 H 0.102 0.898
39 H 0.094 0.906
Dipole moment (debyes) X Y Z Total
from point charges 2.792 -1.600 -6.489 7.243
hybrid contribution -1.502 0.507 -0.027 1.586
sum 1.290 -1.093 -6.516 6.732
Atomic orbital electron populations
1.26113 1.19924 1.05229 1.04856 0.78855 0.66153 0.65113 0.64564
1.26319 1.05837 1.20397 1.04419 1.26158 0.99569 1.09042 1.13887
1.21551 0.97542 1.00565 0.97212 1.22017 1.04234 0.95090 0.83036
1.47825 1.06219 1.54806 1.22553 1.18054 0.85236 0.78164 0.83110
1.90755 1.85021 1.46374 1.24868 1.20263 0.93978 1.11033 0.94121
1.25705 0.97758 1.04266 1.05010 1.83139 1.08084 1.66393 0.96506
1.23928 0.98233 1.11258 0.98286 1.23909 1.05835 0.96018 0.88816
1.86448 1.61201 1.56299 1.32406 0.86180 0.75697 0.81794 0.84187
1.16728 1.13670 1.17785 1.21589 0.94861 0.99860 0.95452 1.27411
0.84521 1.08128 1.17173 0.91513 0.90183 0.90308 0.92410 0.90080
0.92261 0.88967 0.88942 0.88268 0.91457 0.88480 0.89143 0.81016
0.86956 0.74567 0.80408 0.89819 0.90629
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.45 2.02 8.65 113.37 0.98 3.00 16
2 Si 1.06 -4.91 11.99 68.60 0.82 -4.08 16
3 C -0.46 0.09 8.65 113.37 0.98 1.07 16
4 C -0.40 2.82 5.03 72.20 0.36 3.19 16
5 C -0.13 0.73 4.55 30.49 0.14 0.86 16
6 C 0.08 -0.13 4.97 86.08 0.43 0.30 16
7 N -0.58 -2.74 2.64 -630.58 -1.66 -4.40 16
8 C 0.57 6.48 7.52 86.59 0.65 7.13 16
9 O -0.59 -11.63 16.39 -4.14 -0.07 -11.70 16
10 C -0.18 -1.31 5.33 -19.87 -0.11 -1.42 16
11 C -0.19 -1.22 10.66 67.30 0.72 -0.51 16
12 S 0.19 0.48 20.18 -56.49 -1.14 -0.66 16
13 C -0.20 -0.21 5.72 24.51 0.14 -0.07 16
14 C -0.03 0.15 2.94 71.24 0.21 0.36 16
15 O -0.55 2.95 12.83 -148.98 -1.91 1.03 16
16 Si 0.90 -3.06 26.19 68.60 1.80 -1.26 16
17 H -0.24 0.33 7.11 99.48 0.71 1.04 16
18 H -0.21 1.15 7.11 99.48 0.71 1.86 16
19 H -0.25 -0.16 7.11 99.48 0.71 0.55 16
20 C -0.09 -0.20 7.71 22.67 0.17 -0.02 16
21 C -0.21 -0.54 5.42 127.52 0.69 0.15 16
22 H 0.07 -0.20 7.96 -2.39 -0.02 -0.22 16
23 H 0.08 -0.42 7.96 -2.39 -0.02 -0.44 16
24 H 0.08 -0.42 7.96 -2.39 -0.02 -0.44 16
25 H 0.06 0.12 7.96 -2.39 -0.02 0.10 16
26 H 0.08 -0.19 7.96 -2.39 -0.02 -0.21 16
27 H 0.06 0.12 7.96 -2.39 -0.02 0.10 16
28 H 0.09 -0.80 7.99 -2.39 -0.02 -0.81 16
29 H 0.09 -0.78 7.99 -2.39 -0.02 -0.80 16
30 H 0.10 -0.80 8.14 -2.39 -0.02 -0.82 16
31 H 0.07 -0.32 6.85 -2.38 -0.02 -0.34 16
32 H 0.10 -0.07 4.56 -2.38 -0.01 -0.08 16
33 H 0.09 -0.38 8.10 -2.39 -0.02 -0.39 16
34 H 0.17 1.07 8.06 -2.91 -0.02 1.05 16
35 H 0.11 -1.05 7.96 -2.39 -0.02 -1.07 16
36 H 0.40 -5.77 8.74 -74.06 -0.65 -6.42 16
37 H 0.18 -0.31 4.32 -2.91 -0.01 -0.33 16
38 H 0.08 0.02 8.00 -2.39 -0.02 0.00 16
39 H 0.07 0.59 6.94 -2.38 -0.02 0.57 16
Total: 0.00 -18.54 324.12 4.37 -14.16
By element:
Atomic # 1 Polarization: -8.29 SS G_CDS: 1.16 Total: -7.13 kcal
Atomic # 6 Polarization: 8.67 SS G_CDS: 5.37 Total: 14.03 kcal
Atomic # 7 Polarization: -2.74 SS G_CDS: -1.66 Total: -4.40 kcal
Atomic # 8 Polarization: -8.69 SS G_CDS: -1.98 Total: -10.67 kcal
Atomic # 14 Polarization: -7.97 SS G_CDS: 2.62 Total: -5.35 kcal
Atomic # 16 Polarization: 0.48 SS G_CDS: -1.14 Total: -0.66 kcal
Total: -18.54 4.37 -14.16 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
m_22_15766672_6894386.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -46.498 kcal
(2) G-P(sol) polarization free energy of solvation -18.537 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.035 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.373 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.164 kcal
(6) G-S(sol) free energy of system = (1) + (5) -60.663 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.57 seconds