Wall clock time and date at job start Thu Mar 4 2021 17:12:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42901 * 114.00005 * 2 1 4 4 H 1.08999 * 112.85002 * 18.80725 * 3 2 1 5 5 C 1.53778 * 113.61039 * 149.99780 * 3 2 1 6 6 C 1.53787 * 87.08035 * 139.98318 * 5 3 2 7 7 H 1.09004 * 113.61202 * 89.11582 * 6 5 3 8 8 C 1.52992 * 113.61596 * 220.01776 * 6 5 3 9 9 C 1.53002 * 109.47262 * 184.99824 * 8 6 5 10 10 N 1.46496 * 109.47217 * 180.02562 * 9 8 6 11 11 C 1.34780 * 119.99805 * 179.97438 * 10 9 8 12 12 O 1.21568 * 120.00179 * 359.97438 * 11 10 9 13 13 C 1.47713 * 119.99979 * 180.02562 * 11 10 9 14 14 N 1.31815 * 126.51585 * 359.68807 * 13 11 10 15 15 N 1.28468 * 110.07025 * 179.85831 * 14 13 11 16 16 C 1.46503 * 124.88474 * 180.13486 * 15 14 13 17 17 C 1.35034 * 110.23315 * 0.41635 * 15 14 13 18 18 C 1.50698 * 126.38768 * 179.72967 * 17 15 14 19 19 O 1.42900 * 109.46911 * 30.00131 * 18 17 15 20 20 Si 1.86302 * 109.47227 * 150.00117 * 18 17 15 21 21 C 1.35369 * 107.22787 * 359.74958 * 17 15 14 22 22 C 1.53778 * 113.61528 * 247.49756 * 3 2 1 23 23 H 1.09000 * 109.46918 * 59.99438 * 1 2 3 24 24 H 1.09002 * 109.46990 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47030 * 299.99892 * 1 2 3 26 26 H 1.08998 * 113.61879 * 25.43801 * 5 3 2 27 27 H 1.08999 * 113.61887 * 254.52908 * 5 3 2 28 28 H 1.08996 * 109.47544 * 305.00011 * 8 6 5 29 29 H 1.09007 * 109.47088 * 65.00447 * 8 6 5 30 30 H 1.09005 * 109.46792 * 300.00450 * 9 8 6 31 31 H 1.09003 * 109.47149 * 59.99864 * 9 8 6 32 32 H 0.96998 * 120.00016 * 0.02562 * 10 9 8 33 33 H 1.09005 * 109.46764 * 270.32847 * 16 15 14 34 34 H 1.09003 * 109.46997 * 30.32166 * 16 15 14 35 35 H 1.08997 * 109.47158 * 150.32653 * 16 15 14 36 36 H 1.09005 * 109.46927 * 269.99850 * 18 17 15 37 37 H 0.96696 * 113.99964 * 60.00712 * 19 18 17 38 38 H 1.48500 * 110.00079 * 58.68009 * 20 18 17 39 39 H 1.48494 * 110.00018 * 179.97438 * 20 18 17 40 40 H 1.07997 * 127.24951 * 179.97438 * 21 17 15 41 41 H 1.08993 * 113.61229 * 105.47437 * 22 3 2 42 42 H 1.09000 * 113.61263 * 334.57086 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3138 2.0789 0.3238 5 6 3.3756 1.3718 0.7046 6 6 3.8228 2.3181 -0.4221 7 1 3.6223 3.3693 -0.2148 8 6 5.2543 2.0680 -0.9005 9 6 5.6426 3.1340 -1.9271 10 7 7.0131 2.8941 -2.3856 11 6 7.5715 3.7136 -3.2985 12 8 6.9376 4.6515 -3.7416 13 6 8.9532 3.4714 -3.7612 14 7 9.7542 2.5021 -3.3659 15 7 10.8826 2.5870 -3.9742 16 6 12.0094 1.6708 -3.7813 17 6 10.8828 3.6457 -4.8123 18 6 12.0205 4.0848 -5.6977 19 8 12.7948 2.9457 -6.0783 20 14 11.3382 4.9096 -7.2225 21 6 9.6707 4.2394 -4.7087 22 6 2.7535 1.6489 -1.3017 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 3.9089 0.4212 0.7138 27 1 3.3385 1.8470 1.6848 28 1 5.9352 2.1168 -0.0508 29 1 5.3167 1.0814 -1.3599 30 1 4.9617 3.0851 -2.7769 31 1 5.5802 4.1205 -1.4678 32 1 7.5185 2.1450 -2.0329 33 1 12.6458 2.0417 -2.9778 34 1 11.6330 0.6819 -3.5196 35 1 12.5878 1.6072 -4.7030 36 1 12.6519 4.7888 -5.1556 37 1 12.2959 2.2761 -6.5660 38 1 10.5047 6.0771 -6.8386 39 1 12.4502 5.3478 -8.1036 40 1 9.3243 5.1151 -5.2374 41 1 2.2141 2.3477 -1.9410 42 1 3.1166 0.7740 -1.8410 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_16488024_13259642.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 17:12:29 Heat of formation + Delta-G solvation = -6.945229 kcal Electronic energy + Delta-G solvation = -23297.219672 eV Core-core repulsion = 19667.880582 eV Total energy + Delta-G solvation = -3629.339091 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 296.157 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.87388 -40.78661 -40.29574 -38.11544 -37.55908 -35.99672 -34.42665 -32.79138 -31.65775 -28.65158 -27.70035 -26.87374 -26.65817 -25.62310 -23.80686 -22.57185 -22.24285 -21.05019 -20.41433 -19.15485 -17.76396 -17.58623 -17.42172 -17.19656 -16.93148 -16.67236 -16.42220 -16.03114 -15.90075 -15.73876 -15.51825 -15.15164 -14.96173 -14.75401 -14.01090 -13.66497 -13.64428 -13.45193 -13.39895 -13.37003 -13.00055 -12.59483 -12.41691 -12.34363 -12.27671 -11.86930 -11.74357 -11.64765 -11.28939 -11.16788 -10.87207 -10.40472 -10.37331 -10.04456 -9.98806 -4.97129 0.40649 0.78004 1.17742 1.54590 1.70717 1.97012 2.10167 2.25695 2.90026 3.12295 3.31277 3.33263 3.48996 3.63483 3.82359 3.89699 3.98150 4.09770 4.27383 4.28936 4.31585 4.33361 4.38199 4.47263 4.50507 4.53456 4.58447 4.62407 4.65524 4.79055 4.82870 4.84652 4.87118 4.97061 5.02037 5.12064 5.18092 5.26609 5.34569 5.46029 5.66074 6.31391 6.33990 6.52601 6.79261 7.07245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.404 6.404 3 C 0.050 3.950 4 H 0.097 0.903 5 C -0.130 4.130 6 C -0.099 4.099 7 H 0.104 0.896 8 C -0.108 4.108 9 C 0.120 3.880 10 N -0.707 5.707 11 C 0.601 3.399 12 O -0.572 6.572 13 C -0.039 4.039 14 N -0.261 5.261 15 N -0.258 5.258 16 C 0.062 3.938 17 C -0.006 4.006 18 C -0.034 4.034 19 O -0.541 6.541 20 Si 0.791 3.209 21 C -0.198 4.198 22 C -0.153 4.153 23 H 0.047 0.953 24 H 0.091 0.909 25 H 0.050 0.950 26 H 0.086 0.914 27 H 0.081 0.919 28 H 0.083 0.917 29 H 0.076 0.924 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.415 0.585 33 H 0.088 0.912 34 H 0.106 0.894 35 H 0.139 0.861 36 H 0.128 0.872 37 H 0.400 0.600 38 H -0.292 1.292 39 H -0.280 1.280 40 H 0.160 0.840 41 H 0.072 0.928 42 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.144 -4.304 -0.224 4.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.323 6.323 3 C -0.007 4.007 4 H 0.115 0.885 5 C -0.167 4.167 6 C -0.118 4.118 7 H 0.122 0.878 8 C -0.146 4.146 9 C -0.003 4.003 10 N -0.359 5.359 11 C 0.386 3.614 12 O -0.449 6.449 13 C -0.196 4.196 14 N -0.099 5.099 15 N -0.047 5.047 16 C -0.076 4.076 17 C -0.132 4.132 18 C -0.146 4.146 19 O -0.349 6.349 20 Si 0.694 3.306 21 C -0.226 4.226 22 C -0.191 4.191 23 H 0.065 0.935 24 H 0.109 0.891 25 H 0.068 0.932 26 H 0.105 0.895 27 H 0.099 0.901 28 H 0.101 0.899 29 H 0.095 0.905 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.252 0.748 33 H 0.107 0.893 34 H 0.124 0.876 35 H 0.157 0.843 36 H 0.145 0.855 37 H 0.251 0.749 38 H -0.219 1.219 39 H -0.206 1.206 40 H 0.178 0.822 41 H 0.091 0.909 42 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 2.366 -3.795 0.042 4.473 hybrid contribution -0.044 0.763 0.397 0.862 sum 2.322 -3.032 0.439 3.844 Atomic orbital electron populations 1.22926 0.80115 1.03532 1.00634 1.87911 1.20999 1.28604 1.94767 1.23917 0.94428 0.84982 0.97417 0.88501 1.23264 0.94873 1.00176 0.98417 1.22196 0.93350 0.99833 0.96389 0.87787 1.21657 0.96406 0.98297 0.98201 1.21464 0.81249 0.99672 0.97867 1.45817 1.16378 1.31340 1.42325 1.17082 0.83793 0.81719 0.78816 1.90784 1.63420 1.31999 1.58737 1.21744 0.95892 0.98230 1.03773 1.73473 0.94318 1.22841 1.19313 1.45748 1.10857 1.21454 1.26626 1.22974 0.84571 0.92571 1.07472 1.22099 0.98462 0.93052 0.99575 1.24828 0.92059 0.93834 1.03831 1.86447 1.39623 1.31719 1.77115 0.93147 0.79070 0.81722 0.76634 1.21625 0.93346 1.03816 1.03816 1.23600 0.97708 1.00751 0.97017 0.93473 0.89095 0.93154 0.89532 0.90076 0.89874 0.90498 0.91884 0.91723 0.74786 0.89315 0.87581 0.84334 0.85491 0.74851 1.21908 1.20634 0.82215 0.90929 0.89850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.00 10.85 113.37 1.23 1.23 16 2 O -0.40 -2.00 10.71 -148.98 -1.60 -3.60 16 3 C 0.05 0.03 4.31 31.12 0.13 0.17 16 4 H 0.10 -0.18 7.87 -2.39 -0.02 -0.20 16 5 C -0.13 0.17 7.47 31.12 0.23 0.41 16 6 C -0.10 0.26 3.65 -10.27 -0.04 0.23 16 7 H 0.10 -0.40 8.13 -2.39 -0.02 -0.42 16 8 C -0.11 0.32 5.16 30.59 0.16 0.48 16 9 C 0.12 0.20 5.67 86.38 0.49 0.69 16 10 N -0.71 -2.78 5.55 -466.09 -2.59 -5.37 16 11 C 0.60 6.27 7.83 86.75 0.68 6.95 16 12 O -0.57 -9.94 16.93 -3.93 -0.07 -10.01 16 13 C -0.04 -0.31 7.13 42.46 0.30 -0.01 16 14 N -0.26 -1.25 11.67 -48.17 -0.56 -1.81 16 15 N -0.26 -0.07 3.70 -355.91 -1.32 -1.39 16 16 C 0.06 -0.46 11.00 127.77 1.41 0.95 16 17 C -0.01 0.00 6.18 41.40 0.26 0.25 16 18 C -0.03 0.15 2.99 71.24 0.21 0.36 16 19 O -0.54 4.15 10.02 -148.98 -1.49 2.65 16 20 Si 0.79 -2.90 31.37 68.60 2.15 -0.75 16 21 C -0.20 -1.17 9.35 22.41 0.21 -0.96 16 22 C -0.15 0.06 7.46 31.12 0.23 0.29 16 23 H 0.05 -0.07 8.14 -2.39 -0.02 -0.09 16 24 H 0.09 -0.16 8.14 -2.39 -0.02 -0.18 16 25 H 0.05 -0.10 8.14 -2.39 -0.02 -0.12 16 26 H 0.09 0.00 8.10 -2.39 -0.02 -0.02 16 27 H 0.08 -0.23 8.14 -2.39 -0.02 -0.25 16 28 H 0.08 -0.36 8.14 -2.39 -0.02 -0.38 16 29 H 0.08 -0.24 7.84 -2.38 -0.02 -0.25 16 30 H 0.06 0.23 8.14 -2.38 -0.02 0.21 16 31 H 0.06 0.20 8.14 -2.39 -0.02 0.18 16 32 H 0.42 0.10 8.20 -92.71 -0.76 -0.66 16 33 H 0.09 -0.69 8.14 -2.38 -0.02 -0.71 16 34 H 0.11 -1.00 8.14 -2.39 -0.02 -1.02 16 35 H 0.14 -1.54 5.00 -2.39 -0.01 -1.55 16 36 H 0.13 -0.54 7.96 -2.38 -0.02 -0.56 16 37 H 0.40 -6.05 8.39 -74.06 -0.62 -6.67 16 38 H -0.29 -1.04 6.83 99.48 0.68 -0.36 16 39 H -0.28 -0.47 7.11 99.48 0.71 0.23 16 40 H 0.16 1.01 6.84 -2.91 -0.02 0.99 16 41 H 0.07 -0.06 8.14 -2.39 -0.02 -0.08 16 42 H 0.08 0.12 7.90 -2.39 -0.02 0.10 16 Total: 0.00 -20.75 350.59 -0.30 -21.05 By element: Atomic # 1 Polarization: -11.45 SS G_CDS: -0.34 Total: -11.79 kcal Atomic # 6 Polarization: 5.51 SS G_CDS: 5.50 Total: 11.02 kcal Atomic # 7 Polarization: -4.11 SS G_CDS: -4.47 Total: -8.57 kcal Atomic # 8 Polarization: -7.80 SS G_CDS: -3.16 Total: -10.95 kcal Atomic # 14 Polarization: -2.90 SS G_CDS: 2.15 Total: -0.75 kcal Total: -20.75 -0.30 -21.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_16488024_13259642.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.103 kcal (2) G-P(sol) polarization free energy of solvation -20.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds